Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS17935 and QEN71_RS17940 are separated by 94 nucleotides QEN71_RS17940 and QEN71_RS17945 are separated by 10 nucleotides QEN71_RS17945 and QEN71_RS17950 are separated by 39 nucleotides
QEN71_RS17935: QEN71_RS17935 - SDR family oxidoreductase, at 3,993,598 to 3,994,587
_RS17935
QEN71_RS17940: QEN71_RS17940 - hypothetical protein, at 3,994,682 to 3,994,939
_RS17940
QEN71_RS17945: QEN71_RS17945 - MBL fold metallo-hydrolase, at 3,994,950 to 3,995,825
_RS17945
QEN71_RS17950: QEN71_RS17950 - MFS transporter, at 3,995,865 to 3,997,226
_RS17950
Position (kb)
3994
3995 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3993.780 kb on + strand, within QEN71_RS17935 at 3993.780 kb on + strand, within QEN71_RS17935 at 3993.781 kb on - strand, within QEN71_RS17935 at 3993.985 kb on + strand, within QEN71_RS17935 at 3993.985 kb on + strand, within QEN71_RS17935 at 3993.985 kb on + strand, within QEN71_RS17935 at 3993.986 kb on - strand, within QEN71_RS17935 at 3993.986 kb on - strand, within QEN71_RS17935 at 3994.045 kb on + strand, within QEN71_RS17935 at 3994.645 kb on + strand at 3994.645 kb on + strand at 3994.645 kb on + strand at 3994.645 kb on + strand at 3994.647 kb on + strand at 3994.647 kb on + strand at 3994.737 kb on + strand, within QEN71_RS17940 at 3994.738 kb on - strand, within QEN71_RS17940 at 3994.799 kb on + strand, within QEN71_RS17940 at 3994.799 kb on + strand, within QEN71_RS17940 at 3994.799 kb on + strand, within QEN71_RS17940 at 3994.799 kb on + strand, within QEN71_RS17940 at 3994.800 kb on - strand, within QEN71_RS17940 at 3994.901 kb on + strand, within QEN71_RS17940 at 3994.901 kb on + strand, within QEN71_RS17940 at 3994.901 kb on + strand, within QEN71_RS17940 at 3994.902 kb on - strand, within QEN71_RS17940 at 3994.902 kb on - strand, within QEN71_RS17940 at 3994.902 kb on - strand, within QEN71_RS17940 at 3994.995 kb on - strand at 3995.216 kb on + strand, within QEN71_RS17945 at 3995.216 kb on + strand, within QEN71_RS17945 at 3995.216 kb on + strand, within QEN71_RS17945 at 3995.216 kb on + strand, within QEN71_RS17945 at 3995.216 kb on + strand, within QEN71_RS17945 at 3995.217 kb on - strand, within QEN71_RS17945 at 3995.217 kb on - strand, within QEN71_RS17945 at 3995.217 kb on - strand, within QEN71_RS17945 at 3995.217 kb on - strand, within QEN71_RS17945 at 3995.217 kb on - strand, within QEN71_RS17945 at 3995.385 kb on + strand, within QEN71_RS17945 at 3995.385 kb on + strand, within QEN71_RS17945 at 3995.385 kb on + strand, within QEN71_RS17945 at 3995.389 kb on + strand, within QEN71_RS17945 at 3995.389 kb on + strand, within QEN71_RS17945 at 3995.389 kb on + strand, within QEN71_RS17945 at 3995.389 kb on + strand, within QEN71_RS17945 at 3995.482 kb on + strand, within QEN71_RS17945 at 3995.482 kb on + strand, within QEN71_RS17945 at 3995.553 kb on + strand, within QEN71_RS17945 at 3995.619 kb on + strand, within QEN71_RS17945 at 3995.619 kb on + strand, within QEN71_RS17945 at 3995.619 kb on + strand, within QEN71_RS17945 at 3995.780 kb on + strand at 3995.781 kb on - strand at 3995.908 kb on + strand at 3995.909 kb on - strand at 3995.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 3,993,780 + QEN71_RS17935 0.18 +0.2 3,993,780 + QEN71_RS17935 0.18 -0.8 3,993,781 - QEN71_RS17935 0.18 +0.3 3,993,985 + QEN71_RS17935 0.39 -2.2 3,993,985 + QEN71_RS17935 0.39 -0.9 3,993,985 + QEN71_RS17935 0.39 +0.8 3,993,986 - QEN71_RS17935 0.39 +0.9 3,993,986 - QEN71_RS17935 0.39 +0.4 3,994,045 + QEN71_RS17935 0.45 +0.1 3,994,645 + +2.3 3,994,645 + -0.1 3,994,645 + -0.8 3,994,645 + -0.7 3,994,647 + -0.2 3,994,647 + +1.4 3,994,737 + QEN71_RS17940 0.21 -0.2 3,994,738 - QEN71_RS17940 0.22 -0.4 3,994,799 + QEN71_RS17940 0.45 +0.8 3,994,799 + QEN71_RS17940 0.45 +0.1 3,994,799 + QEN71_RS17940 0.45 -1.2 3,994,799 + QEN71_RS17940 0.45 -0.2 3,994,800 - QEN71_RS17940 0.46 -0.1 3,994,901 + QEN71_RS17940 0.85 -0.2 3,994,901 + QEN71_RS17940 0.85 -0.2 3,994,901 + QEN71_RS17940 0.85 -0.4 3,994,902 - QEN71_RS17940 0.85 -0.2 3,994,902 - QEN71_RS17940 0.85 -0.5 3,994,902 - QEN71_RS17940 0.85 +0.7 3,994,995 - +0.5 3,995,216 + QEN71_RS17945 0.30 -0.5 3,995,216 + QEN71_RS17945 0.30 +1.3 3,995,216 + QEN71_RS17945 0.30 -1.2 3,995,216 + QEN71_RS17945 0.30 +0.1 3,995,216 + QEN71_RS17945 0.30 -1.6 3,995,217 - QEN71_RS17945 0.30 -0.4 3,995,217 - QEN71_RS17945 0.30 -0.3 3,995,217 - QEN71_RS17945 0.30 +0.7 3,995,217 - QEN71_RS17945 0.30 -0.1 3,995,217 - QEN71_RS17945 0.30 -0.1 3,995,385 + QEN71_RS17945 0.50 +1.7 3,995,385 + QEN71_RS17945 0.50 -1.2 3,995,385 + QEN71_RS17945 0.50 +0.8 3,995,389 + QEN71_RS17945 0.50 -0.1 3,995,389 + QEN71_RS17945 0.50 +0.6 3,995,389 + QEN71_RS17945 0.50 -2.1 3,995,389 + QEN71_RS17945 0.50 -1.6 3,995,482 + QEN71_RS17945 0.61 -0.3 3,995,482 + QEN71_RS17945 0.61 -1.1 3,995,553 + QEN71_RS17945 0.69 -0.6 3,995,619 + QEN71_RS17945 0.76 +0.4 3,995,619 + QEN71_RS17945 0.76 +0.3 3,995,619 + QEN71_RS17945 0.76 -1.1 3,995,780 + +0.4 3,995,781 - +0.4 3,995,908 + -0.1 3,995,909 - +1.3 3,995,909 - +1.3
Or see this region's nucleotide sequence