Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS17940

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS17935 and QEN71_RS17940 are separated by 94 nucleotidesQEN71_RS17940 and QEN71_RS17945 are separated by 10 nucleotidesQEN71_RS17945 and QEN71_RS17950 are separated by 39 nucleotides QEN71_RS17935: QEN71_RS17935 - SDR family oxidoreductase, at 3,993,598 to 3,994,587 _RS17935 QEN71_RS17940: QEN71_RS17940 - hypothetical protein, at 3,994,682 to 3,994,939 _RS17940 QEN71_RS17945: QEN71_RS17945 - MBL fold metallo-hydrolase, at 3,994,950 to 3,995,825 _RS17945 QEN71_RS17950: QEN71_RS17950 - MFS transporter, at 3,995,865 to 3,997,226 _RS17950 Position (kb) 3994 3995Strain fitness (log2 ratio) -2 -1 0 1 2at 3993.780 kb on + strand, within QEN71_RS17935at 3993.780 kb on + strand, within QEN71_RS17935at 3993.781 kb on - strand, within QEN71_RS17935at 3993.985 kb on + strand, within QEN71_RS17935at 3993.985 kb on + strand, within QEN71_RS17935at 3993.985 kb on + strand, within QEN71_RS17935at 3993.986 kb on - strand, within QEN71_RS17935at 3993.986 kb on - strand, within QEN71_RS17935at 3994.045 kb on + strand, within QEN71_RS17935at 3994.645 kb on + strandat 3994.645 kb on + strandat 3994.645 kb on + strandat 3994.645 kb on + strandat 3994.647 kb on + strandat 3994.647 kb on + strandat 3994.737 kb on + strand, within QEN71_RS17940at 3994.738 kb on - strand, within QEN71_RS17940at 3994.799 kb on + strand, within QEN71_RS17940at 3994.799 kb on + strand, within QEN71_RS17940at 3994.799 kb on + strand, within QEN71_RS17940at 3994.799 kb on + strand, within QEN71_RS17940at 3994.800 kb on - strand, within QEN71_RS17940at 3994.901 kb on + strand, within QEN71_RS17940at 3994.901 kb on + strand, within QEN71_RS17940at 3994.901 kb on + strand, within QEN71_RS17940at 3994.902 kb on - strand, within QEN71_RS17940at 3994.902 kb on - strand, within QEN71_RS17940at 3994.902 kb on - strand, within QEN71_RS17940at 3994.995 kb on - strandat 3995.216 kb on + strand, within QEN71_RS17945at 3995.216 kb on + strand, within QEN71_RS17945at 3995.216 kb on + strand, within QEN71_RS17945at 3995.216 kb on + strand, within QEN71_RS17945at 3995.216 kb on + strand, within QEN71_RS17945at 3995.217 kb on - strand, within QEN71_RS17945at 3995.217 kb on - strand, within QEN71_RS17945at 3995.217 kb on - strand, within QEN71_RS17945at 3995.217 kb on - strand, within QEN71_RS17945at 3995.217 kb on - strand, within QEN71_RS17945at 3995.385 kb on + strand, within QEN71_RS17945at 3995.385 kb on + strand, within QEN71_RS17945at 3995.385 kb on + strand, within QEN71_RS17945at 3995.389 kb on + strand, within QEN71_RS17945at 3995.389 kb on + strand, within QEN71_RS17945at 3995.389 kb on + strand, within QEN71_RS17945at 3995.389 kb on + strand, within QEN71_RS17945at 3995.482 kb on + strand, within QEN71_RS17945at 3995.482 kb on + strand, within QEN71_RS17945at 3995.553 kb on + strand, within QEN71_RS17945at 3995.619 kb on + strand, within QEN71_RS17945at 3995.619 kb on + strand, within QEN71_RS17945at 3995.619 kb on + strand, within QEN71_RS17945at 3995.780 kb on + strandat 3995.781 kb on - strandat 3995.908 kb on + strandat 3995.909 kb on - strandat 3995.909 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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3,993,780 + QEN71_RS17935 0.18 +0.2
3,993,780 + QEN71_RS17935 0.18 -0.8
3,993,781 - QEN71_RS17935 0.18 +0.3
3,993,985 + QEN71_RS17935 0.39 -2.2
3,993,985 + QEN71_RS17935 0.39 -0.9
3,993,985 + QEN71_RS17935 0.39 +0.8
3,993,986 - QEN71_RS17935 0.39 +0.9
3,993,986 - QEN71_RS17935 0.39 +0.4
3,994,045 + QEN71_RS17935 0.45 +0.1
3,994,645 + +2.3
3,994,645 + -0.1
3,994,645 + -0.8
3,994,645 + -0.7
3,994,647 + -0.2
3,994,647 + +1.4
3,994,737 + QEN71_RS17940 0.21 -0.2
3,994,738 - QEN71_RS17940 0.22 -0.4
3,994,799 + QEN71_RS17940 0.45 +0.8
3,994,799 + QEN71_RS17940 0.45 +0.1
3,994,799 + QEN71_RS17940 0.45 -1.2
3,994,799 + QEN71_RS17940 0.45 -0.2
3,994,800 - QEN71_RS17940 0.46 -0.1
3,994,901 + QEN71_RS17940 0.85 -0.2
3,994,901 + QEN71_RS17940 0.85 -0.2
3,994,901 + QEN71_RS17940 0.85 -0.4
3,994,902 - QEN71_RS17940 0.85 -0.2
3,994,902 - QEN71_RS17940 0.85 -0.5
3,994,902 - QEN71_RS17940 0.85 +0.7
3,994,995 - +0.5
3,995,216 + QEN71_RS17945 0.30 -0.5
3,995,216 + QEN71_RS17945 0.30 +1.3
3,995,216 + QEN71_RS17945 0.30 -1.2
3,995,216 + QEN71_RS17945 0.30 +0.1
3,995,216 + QEN71_RS17945 0.30 -1.6
3,995,217 - QEN71_RS17945 0.30 -0.4
3,995,217 - QEN71_RS17945 0.30 -0.3
3,995,217 - QEN71_RS17945 0.30 +0.7
3,995,217 - QEN71_RS17945 0.30 -0.1
3,995,217 - QEN71_RS17945 0.30 -0.1
3,995,385 + QEN71_RS17945 0.50 +1.7
3,995,385 + QEN71_RS17945 0.50 -1.2
3,995,385 + QEN71_RS17945 0.50 +0.8
3,995,389 + QEN71_RS17945 0.50 -0.1
3,995,389 + QEN71_RS17945 0.50 +0.6
3,995,389 + QEN71_RS17945 0.50 -2.1
3,995,389 + QEN71_RS17945 0.50 -1.6
3,995,482 + QEN71_RS17945 0.61 -0.3
3,995,482 + QEN71_RS17945 0.61 -1.1
3,995,553 + QEN71_RS17945 0.69 -0.6
3,995,619 + QEN71_RS17945 0.76 +0.4
3,995,619 + QEN71_RS17945 0.76 +0.3
3,995,619 + QEN71_RS17945 0.76 -1.1
3,995,780 + +0.4
3,995,781 - +0.4
3,995,908 + -0.1
3,995,909 - +1.3
3,995,909 - +1.3

Or see this region's nucleotide sequence