Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08415

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08405 and QEN71_RS08410 are separated by 87 nucleotidesQEN71_RS08410 and QEN71_RS08415 are separated by 23 nucleotidesQEN71_RS08415 and QEN71_RS08420 are separated by 47 nucleotidesQEN71_RS08420 and QEN71_RS08425 are separated by 377 nucleotides QEN71_RS08405: QEN71_RS08405 - L-carnitine dehydrogenase, at 1,873,632 to 1,874,597 _RS08405 QEN71_RS08410: QEN71_RS08410 - thioesterase family protein, at 1,874,685 to 1,875,176 _RS08410 QEN71_RS08415: QEN71_RS08415 - alpha/beta hydrolase, at 1,875,200 to 1,876,135 _RS08415 QEN71_RS08420: QEN71_RS08420 - DUF3331 domain-containing protein, at 1,876,183 to 1,876,470 _RS08420 QEN71_RS08425: QEN71_RS08425 - AI-2E family transporter, at 1,876,848 to 1,877,933 _RS08425 Position (kb) 1875 1876 1877Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1874.341 kb on - strand, within QEN71_RS08405at 1874.341 kb on - strand, within QEN71_RS08405at 1874.341 kb on - strand, within QEN71_RS08405at 1874.341 kb on - strand, within QEN71_RS08405at 1874.595 kb on + strandat 1874.595 kb on + strandat 1874.596 kb on - strandat 1874.596 kb on - strandat 1874.596 kb on - strandat 1874.712 kb on + strandat 1874.746 kb on - strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.773 kb on - strand, within QEN71_RS08410at 1874.773 kb on - strand, within QEN71_RS08410at 1874.773 kb on - strand, within QEN71_RS08410at 1874.862 kb on + strand, within QEN71_RS08410at 1874.862 kb on + strand, within QEN71_RS08410at 1874.862 kb on + strand, within QEN71_RS08410at 1874.862 kb on + strand, within QEN71_RS08410at 1874.862 kb on + strand, within QEN71_RS08410at 1874.862 kb on + strand, within QEN71_RS08410at 1874.863 kb on - strand, within QEN71_RS08410at 1874.863 kb on - strand, within QEN71_RS08410at 1874.886 kb on + strand, within QEN71_RS08410at 1874.886 kb on + strand, within QEN71_RS08410at 1874.886 kb on + strand, within QEN71_RS08410at 1874.886 kb on + strand, within QEN71_RS08410at 1874.886 kb on + strand, within QEN71_RS08410at 1874.886 kb on + strand, within QEN71_RS08410at 1874.887 kb on - strand, within QEN71_RS08410at 1874.887 kb on - strand, within QEN71_RS08410at 1874.887 kb on - strand, within QEN71_RS08410at 1874.967 kb on + strand, within QEN71_RS08410at 1875.132 kb on + strandat 1875.132 kb on + strandat 1875.175 kb on - strandat 1875.175 kb on - strandat 1875.297 kb on - strand, within QEN71_RS08415at 1875.297 kb on - strand, within QEN71_RS08415at 1875.297 kb on - strand, within QEN71_RS08415at 1875.330 kb on + strand, within QEN71_RS08415at 1875.404 kb on + strand, within QEN71_RS08415at 1875.404 kb on + strand, within QEN71_RS08415at 1875.404 kb on + strand, within QEN71_RS08415at 1875.446 kb on + strand, within QEN71_RS08415at 1875.447 kb on - strand, within QEN71_RS08415at 1875.447 kb on - strand, within QEN71_RS08415at 1875.520 kb on + strand, within QEN71_RS08415at 1875.708 kb on + strand, within QEN71_RS08415at 1875.758 kb on + strand, within QEN71_RS08415at 1875.758 kb on + strand, within QEN71_RS08415at 1875.759 kb on - strand, within QEN71_RS08415at 1875.759 kb on - strand, within QEN71_RS08415at 1875.800 kb on - strand, within QEN71_RS08415at 1875.857 kb on + strand, within QEN71_RS08415at 1875.857 kb on + strand, within QEN71_RS08415at 1875.857 kb on + strand, within QEN71_RS08415at 1875.858 kb on - strand, within QEN71_RS08415at 1875.858 kb on - strand, within QEN71_RS08415at 1875.879 kb on - strand, within QEN71_RS08415at 1875.911 kb on + strand, within QEN71_RS08415at 1875.912 kb on - strand, within QEN71_RS08415at 1875.912 kb on - strand, within QEN71_RS08415at 1876.186 kb on + strandat 1876.186 kb on + strandat 1876.187 kb on - strandat 1876.187 kb on - strandat 1876.187 kb on - strandat 1876.320 kb on + strand, within QEN71_RS08420at 1876.320 kb on + strand, within QEN71_RS08420at 1876.320 kb on + strand, within QEN71_RS08420at 1876.320 kb on + strand, within QEN71_RS08420at 1876.321 kb on - strand, within QEN71_RS08420at 1876.321 kb on - strand, within QEN71_RS08420at 1876.321 kb on - strand, within QEN71_RS08420at 1876.321 kb on - strand, within QEN71_RS08420at 1876.450 kb on + strandat 1876.451 kb on - strandat 1876.482 kb on + strandat 1876.482 kb on + strandat 1876.482 kb on + strandat 1876.482 kb on + strandat 1876.483 kb on - strandat 1876.483 kb on - strandat 1876.483 kb on - strandat 1876.483 kb on - strandat 1876.483 kb on - strandat 1876.483 kb on - strandat 1876.483 kb on - strandat 1876.483 kb on - strandat 1876.502 kb on + strandat 1876.502 kb on + strandat 1876.583 kb on + strandat 1876.583 kb on + strandat 1876.583 kb on + strandat 1876.584 kb on - strandat 1876.584 kb on - strandat 1876.626 kb on + strandat 1876.654 kb on - strandat 1876.654 kb on - strandat 1876.654 kb on - strandat 1876.654 kb on - strandat 1876.714 kb on + strandat 1876.714 kb on + strandat 1876.715 kb on - strandat 1876.715 kb on - strandat 1876.799 kb on + strandat 1876.799 kb on + strandat 1876.799 kb on + strandat 1876.800 kb on - strandat 1876.800 kb on - strandat 1876.800 kb on - strandat 1876.932 kb on + strandat 1876.932 kb on + strandat 1876.932 kb on + strandat 1876.932 kb on + strandat 1876.932 kb on + strandat 1876.932 kb on + strandat 1876.933 kb on - strandat 1876.933 kb on - strandat 1876.933 kb on - strandat 1876.933 kb on - strandat 1876.933 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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1,874,341 - QEN71_RS08405 0.73 -0.4
1,874,341 - QEN71_RS08405 0.73 -1.4
1,874,341 - QEN71_RS08405 0.73 +0.2
1,874,341 - QEN71_RS08405 0.73 -1.9
1,874,595 + -0.0
1,874,595 + +0.7
1,874,596 - +0.4
1,874,596 - +1.9
1,874,596 - +0.2
1,874,712 + +0.9
1,874,746 - QEN71_RS08410 0.12 -0.7
1,874,772 + QEN71_RS08410 0.18 +0.2
1,874,772 + QEN71_RS08410 0.18 -0.3
1,874,772 + QEN71_RS08410 0.18 -0.3
1,874,772 + QEN71_RS08410 0.18 -1.0
1,874,772 + QEN71_RS08410 0.18 -0.2
1,874,772 + QEN71_RS08410 0.18 -0.3
1,874,772 + QEN71_RS08410 0.18 -0.9
1,874,772 + QEN71_RS08410 0.18 -0.7
1,874,773 - QEN71_RS08410 0.18 -2.1
1,874,773 - QEN71_RS08410 0.18 +0.1
1,874,773 - QEN71_RS08410 0.18 -0.3
1,874,862 + QEN71_RS08410 0.36 -0.4
1,874,862 + QEN71_RS08410 0.36 -0.9
1,874,862 + QEN71_RS08410 0.36 -1.7
1,874,862 + QEN71_RS08410 0.36 +0.1
1,874,862 + QEN71_RS08410 0.36 +0.1
1,874,862 + QEN71_RS08410 0.36 -0.3
1,874,863 - QEN71_RS08410 0.36 +0.2
1,874,863 - QEN71_RS08410 0.36 +0.5
1,874,886 + QEN71_RS08410 0.41 +0.1
1,874,886 + QEN71_RS08410 0.41 +0.2
1,874,886 + QEN71_RS08410 0.41 +0.2
1,874,886 + QEN71_RS08410 0.41 -0.8
1,874,886 + QEN71_RS08410 0.41 -0.3
1,874,886 + QEN71_RS08410 0.41 -0.3
1,874,887 - QEN71_RS08410 0.41 -1.8
1,874,887 - QEN71_RS08410 0.41 -1.1
1,874,887 - QEN71_RS08410 0.41 -0.2
1,874,967 + QEN71_RS08410 0.57 +0.2
1,875,132 + -0.4
1,875,132 + +0.0
1,875,175 - +0.4
1,875,175 - +0.9
1,875,297 - QEN71_RS08415 0.10 -0.1
1,875,297 - QEN71_RS08415 0.10 +0.6
1,875,297 - QEN71_RS08415 0.10 -0.1
1,875,330 + QEN71_RS08415 0.14 +0.8
1,875,404 + QEN71_RS08415 0.22 -0.1
1,875,404 + QEN71_RS08415 0.22 +0.4
1,875,404 + QEN71_RS08415 0.22 +1.7
1,875,446 + QEN71_RS08415 0.26 -0.3
1,875,447 - QEN71_RS08415 0.26 -0.6
1,875,447 - QEN71_RS08415 0.26 -0.5
1,875,520 + QEN71_RS08415 0.34 +0.8
1,875,708 + QEN71_RS08415 0.54 -2.5
1,875,758 + QEN71_RS08415 0.60 -0.4
1,875,758 + QEN71_RS08415 0.60 -1.1
1,875,759 - QEN71_RS08415 0.60 +0.6
1,875,759 - QEN71_RS08415 0.60 -0.4
1,875,800 - QEN71_RS08415 0.64 -0.8
1,875,857 + QEN71_RS08415 0.70 -0.5
1,875,857 + QEN71_RS08415 0.70 +0.4
1,875,857 + QEN71_RS08415 0.70 +1.5
1,875,858 - QEN71_RS08415 0.70 -0.1
1,875,858 - QEN71_RS08415 0.70 +0.0
1,875,879 - QEN71_RS08415 0.73 -0.2
1,875,911 + QEN71_RS08415 0.76 -1.5
1,875,912 - QEN71_RS08415 0.76 -1.3
1,875,912 - QEN71_RS08415 0.76 +0.0
1,876,186 + -0.4
1,876,186 + -0.4
1,876,187 - -0.4
1,876,187 - -2.2
1,876,187 - +0.1
1,876,320 + QEN71_RS08420 0.48 +0.9
1,876,320 + QEN71_RS08420 0.48 +0.1
1,876,320 + QEN71_RS08420 0.48 +0.7
1,876,320 + QEN71_RS08420 0.48 +1.1
1,876,321 - QEN71_RS08420 0.48 -0.9
1,876,321 - QEN71_RS08420 0.48 +0.4
1,876,321 - QEN71_RS08420 0.48 +0.9
1,876,321 - QEN71_RS08420 0.48 -0.7
1,876,450 + +0.5
1,876,451 - -1.0
1,876,482 + -1.4
1,876,482 + -1.3
1,876,482 + -1.3
1,876,482 + -1.6
1,876,483 - -3.2
1,876,483 - -0.2
1,876,483 - +0.0
1,876,483 - -1.1
1,876,483 - -0.2
1,876,483 - -0.1
1,876,483 - +0.5
1,876,483 - -0.2
1,876,502 + -0.3
1,876,502 + -1.2
1,876,583 + -0.9
1,876,583 + -1.1
1,876,583 + -0.7
1,876,584 - -0.1
1,876,584 - -1.8
1,876,626 + +0.1
1,876,654 - -0.3
1,876,654 - +0.5
1,876,654 - -0.5
1,876,654 - +0.9
1,876,714 + +0.9
1,876,714 + -1.7
1,876,715 - -0.5
1,876,715 - -0.7
1,876,799 + -0.1
1,876,799 + -0.1
1,876,799 + -0.3
1,876,800 - -0.1
1,876,800 - -0.9
1,876,800 - -2.4
1,876,932 + -1.0
1,876,932 + -0.4
1,876,932 + +0.5
1,876,932 + -1.8
1,876,932 + -0.0
1,876,932 + +0.3
1,876,933 - -0.1
1,876,933 - -1.0
1,876,933 - -0.4
1,876,933 - -0.2
1,876,933 - -0.5

Or see this region's nucleotide sequence