Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS08285 and QEN71_RS08290 are separated by 94 nucleotides QEN71_RS08290 and QEN71_RS08295 are separated by 4 nucleotides
QEN71_RS08285: QEN71_RS08285 - toll/interleukin-1 receptor domain-containing protein, at 1,837,488 to 1,838,699
_RS08285
QEN71_RS08290: QEN71_RS08290 - toll/interleukin-1 receptor domain-containing protein, at 1,838,794 to 1,840,239
_RS08290
QEN71_RS08295: QEN71_RS08295 - hypothetical protein, at 1,840,244 to 1,844,290
_RS08295
Position (kb)
1838
1839
1840
1841 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1837.815 kb on + strand, within QEN71_RS08285 at 1837.869 kb on + strand, within QEN71_RS08285 at 1837.870 kb on - strand, within QEN71_RS08285 at 1837.931 kb on - strand, within QEN71_RS08285 at 1837.948 kb on + strand, within QEN71_RS08285 at 1837.948 kb on + strand, within QEN71_RS08285 at 1837.948 kb on + strand, within QEN71_RS08285 at 1837.948 kb on + strand, within QEN71_RS08285 at 1837.948 kb on + strand, within QEN71_RS08285 at 1838.010 kb on - strand, within QEN71_RS08285 at 1838.319 kb on + strand, within QEN71_RS08285 at 1838.320 kb on - strand, within QEN71_RS08285 at 1838.320 kb on - strand, within QEN71_RS08285 at 1838.446 kb on + strand, within QEN71_RS08285 at 1838.446 kb on + strand, within QEN71_RS08285 at 1838.453 kb on - strand, within QEN71_RS08285 at 1838.554 kb on + strand, within QEN71_RS08285 at 1838.555 kb on - strand, within QEN71_RS08285 at 1838.703 kb on + strand at 1838.711 kb on + strand at 1838.712 kb on - strand at 1838.712 kb on - strand at 1838.800 kb on + strand at 1838.800 kb on + strand at 1839.282 kb on + strand, within QEN71_RS08290 at 1839.282 kb on + strand, within QEN71_RS08290 at 1839.282 kb on + strand, within QEN71_RS08290 at 1839.283 kb on - strand, within QEN71_RS08290 at 1839.283 kb on - strand, within QEN71_RS08290 at 1839.283 kb on - strand, within QEN71_RS08290 at 1839.388 kb on + strand, within QEN71_RS08290 at 1839.509 kb on - strand, within QEN71_RS08290 at 1839.550 kb on + strand, within QEN71_RS08290 at 1839.550 kb on + strand, within QEN71_RS08290 at 1839.550 kb on + strand, within QEN71_RS08290 at 1839.550 kb on + strand, within QEN71_RS08290 at 1839.550 kb on + strand, within QEN71_RS08290 at 1839.551 kb on - strand, within QEN71_RS08290 at 1839.994 kb on - strand, within QEN71_RS08290 at 1840.010 kb on + strand, within QEN71_RS08290 at 1840.011 kb on - strand, within QEN71_RS08290 at 1840.054 kb on + strand, within QEN71_RS08290 at 1840.637 kb on + strand at 1840.638 kb on - strand at 1840.653 kb on + strand, within QEN71_RS08295 at 1840.720 kb on - strand, within QEN71_RS08295 at 1840.720 kb on - strand, within QEN71_RS08295 at 1840.812 kb on - strand, within QEN71_RS08295 at 1840.812 kb on - strand, within QEN71_RS08295 at 1840.812 kb on - strand, within QEN71_RS08295 at 1840.896 kb on - strand, within QEN71_RS08295 at 1841.151 kb on - strand, within QEN71_RS08295
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 1,837,815 + QEN71_RS08285 0.27 -0.7 1,837,869 + QEN71_RS08285 0.31 -0.4 1,837,870 - QEN71_RS08285 0.32 -0.2 1,837,931 - QEN71_RS08285 0.37 +1.1 1,837,948 + QEN71_RS08285 0.38 -0.1 1,837,948 + QEN71_RS08285 0.38 -0.8 1,837,948 + QEN71_RS08285 0.38 -1.1 1,837,948 + QEN71_RS08285 0.38 -0.3 1,837,948 + QEN71_RS08285 0.38 -0.9 1,838,010 - QEN71_RS08285 0.43 +0.8 1,838,319 + QEN71_RS08285 0.69 -0.1 1,838,320 - QEN71_RS08285 0.69 +0.1 1,838,320 - QEN71_RS08285 0.69 -0.1 1,838,446 + QEN71_RS08285 0.79 -0.9 1,838,446 + QEN71_RS08285 0.79 -1.1 1,838,453 - QEN71_RS08285 0.80 +0.3 1,838,554 + QEN71_RS08285 0.88 +1.4 1,838,555 - QEN71_RS08285 0.88 +0.5 1,838,703 + -0.1 1,838,711 + -1.2 1,838,712 - -0.4 1,838,712 - -1.3 1,838,800 + +0.2 1,838,800 + +0.3 1,839,282 + QEN71_RS08290 0.34 -1.9 1,839,282 + QEN71_RS08290 0.34 -0.7 1,839,282 + QEN71_RS08290 0.34 -0.7 1,839,283 - QEN71_RS08290 0.34 -0.7 1,839,283 - QEN71_RS08290 0.34 +0.2 1,839,283 - QEN71_RS08290 0.34 +1.7 1,839,388 + QEN71_RS08290 0.41 -1.7 1,839,509 - QEN71_RS08290 0.49 -0.5 1,839,550 + QEN71_RS08290 0.52 +0.7 1,839,550 + QEN71_RS08290 0.52 +0.3 1,839,550 + QEN71_RS08290 0.52 +0.4 1,839,550 + QEN71_RS08290 0.52 -0.4 1,839,550 + QEN71_RS08290 0.52 -0.2 1,839,551 - QEN71_RS08290 0.52 +1.5 1,839,994 - QEN71_RS08290 0.83 +0.9 1,840,010 + QEN71_RS08290 0.84 -0.6 1,840,011 - QEN71_RS08290 0.84 -1.3 1,840,054 + QEN71_RS08290 0.87 +2.2 1,840,637 + +0.5 1,840,638 - +0.1 1,840,653 + QEN71_RS08295 0.10 -0.3 1,840,720 - QEN71_RS08295 0.12 +0.4 1,840,720 - QEN71_RS08295 0.12 -1.2 1,840,812 - QEN71_RS08295 0.14 -0.8 1,840,812 - QEN71_RS08295 0.14 +0.1 1,840,812 - QEN71_RS08295 0.14 -0.8 1,840,896 - QEN71_RS08295 0.16 +1.5 1,841,151 - QEN71_RS08295 0.22 -0.1
Or see this region's nucleotide sequence