Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS07760

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS07750 and QEN71_RS07755 are separated by 6 nucleotidesQEN71_RS07755 and QEN71_RS07760 are separated by 122 nucleotidesQEN71_RS07760 and QEN71_RS07765 are separated by 38 nucleotidesQEN71_RS07765 and QEN71_RS07770 are separated by 10 nucleotides QEN71_RS07750: QEN71_RS07750 - histidine utilization repressor, at 1,718,304 to 1,719,059 _RS07750 QEN71_RS07755: QEN71_RS07755 - histidine utilization repressor, at 1,719,066 to 1,719,815 _RS07755 QEN71_RS07760: QEN71_RS07760 - amino acid ABC transporter ATP-binding protein, at 1,719,938 to 1,720,804 _RS07760 QEN71_RS07765: QEN71_RS07765 - amino acid ABC transporter permease, at 1,720,843 to 1,721,505 _RS07765 QEN71_RS07770: QEN71_RS07770 - amino acid ABC transporter permease, at 1,721,516 to 1,722,166 _RS07770 Position (kb) 1719 1720 1721Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1719.063 kb on + strandat 1719.068 kb on - strandat 1719.086 kb on + strandat 1719.312 kb on + strand, within QEN71_RS07755at 1719.312 kb on + strand, within QEN71_RS07755at 1719.502 kb on + strand, within QEN71_RS07755at 1719.508 kb on + strand, within QEN71_RS07755at 1719.508 kb on + strand, within QEN71_RS07755at 1719.754 kb on + strandat 1719.755 kb on - strandat 1719.755 kb on - strandat 1719.773 kb on - strandat 1719.879 kb on + strandat 1719.879 kb on + strandat 1719.880 kb on - strandat 1720.069 kb on + strand, within QEN71_RS07760at 1720.069 kb on + strand, within QEN71_RS07760at 1720.069 kb on + strand, within QEN71_RS07760at 1720.436 kb on - strand, within QEN71_RS07760at 1720.538 kb on - strand, within QEN71_RS07760at 1720.582 kb on - strand, within QEN71_RS07760at 1720.727 kb on + strandat 1721.277 kb on - strand, within QEN71_RS07765at 1721.329 kb on - strand, within QEN71_RS07765at 1721.330 kb on + strand, within QEN71_RS07765at 1721.330 kb on + strand, within QEN71_RS07765at 1721.330 kb on + strand, within QEN71_RS07765at 1721.331 kb on - strand, within QEN71_RS07765at 1721.331 kb on - strand, within QEN71_RS07765at 1721.479 kb on - strandat 1721.583 kb on + strand, within QEN71_RS07770at 1721.583 kb on + strand, within QEN71_RS07770at 1721.605 kb on - strand, within QEN71_RS07770at 1721.622 kb on + strand, within QEN71_RS07770at 1721.656 kb on + strand, within QEN71_RS07770at 1721.705 kb on + strand, within QEN71_RS07770at 1721.705 kb on + strand, within QEN71_RS07770at 1721.706 kb on - strand, within QEN71_RS07770

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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1,719,063 + +0.0
1,719,068 - +2.8
1,719,086 + -0.6
1,719,312 + QEN71_RS07755 0.33 -0.1
1,719,312 + QEN71_RS07755 0.33 -0.4
1,719,502 + QEN71_RS07755 0.58 +0.1
1,719,508 + QEN71_RS07755 0.59 -1.1
1,719,508 + QEN71_RS07755 0.59 -0.7
1,719,754 + +0.4
1,719,755 - -0.9
1,719,755 - -0.6
1,719,773 - +0.2
1,719,879 + +1.1
1,719,879 + -0.4
1,719,880 - -0.5
1,720,069 + QEN71_RS07760 0.15 +0.7
1,720,069 + QEN71_RS07760 0.15 +1.4
1,720,069 + QEN71_RS07760 0.15 -1.2
1,720,436 - QEN71_RS07760 0.57 -1.2
1,720,538 - QEN71_RS07760 0.69 -0.7
1,720,582 - QEN71_RS07760 0.74 -0.3
1,720,727 + +0.9
1,721,277 - QEN71_RS07765 0.65 -1.4
1,721,329 - QEN71_RS07765 0.73 -0.1
1,721,330 + QEN71_RS07765 0.73 +0.1
1,721,330 + QEN71_RS07765 0.73 -0.3
1,721,330 + QEN71_RS07765 0.73 -0.3
1,721,331 - QEN71_RS07765 0.74 -0.6
1,721,331 - QEN71_RS07765 0.74 +0.5
1,721,479 - -0.1
1,721,583 + QEN71_RS07770 0.10 -0.8
1,721,583 + QEN71_RS07770 0.10 -1.8
1,721,605 - QEN71_RS07770 0.14 +1.2
1,721,622 + QEN71_RS07770 0.16 -0.6
1,721,656 + QEN71_RS07770 0.22 -0.6
1,721,705 + QEN71_RS07770 0.29 -0.1
1,721,705 + QEN71_RS07770 0.29 -0.9
1,721,706 - QEN71_RS07770 0.29 +0.4

Or see this region's nucleotide sequence