Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS07750 and QEN71_RS07755 are separated by 6 nucleotides QEN71_RS07755 and QEN71_RS07760 are separated by 122 nucleotides QEN71_RS07760 and QEN71_RS07765 are separated by 38 nucleotides QEN71_RS07765 and QEN71_RS07770 are separated by 10 nucleotides
QEN71_RS07750: QEN71_RS07750 - histidine utilization repressor, at 1,718,304 to 1,719,059
_RS07750
QEN71_RS07755: QEN71_RS07755 - histidine utilization repressor, at 1,719,066 to 1,719,815
_RS07755
QEN71_RS07760: QEN71_RS07760 - amino acid ABC transporter ATP-binding protein, at 1,719,938 to 1,720,804
_RS07760
QEN71_RS07765: QEN71_RS07765 - amino acid ABC transporter permease, at 1,720,843 to 1,721,505
_RS07765
QEN71_RS07770: QEN71_RS07770 - amino acid ABC transporter permease, at 1,721,516 to 1,722,166
_RS07770
Position (kb)
1719
1720
1721 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1719.063 kb on + strand at 1719.068 kb on - strand at 1719.086 kb on + strand at 1719.312 kb on + strand, within QEN71_RS07755 at 1719.312 kb on + strand, within QEN71_RS07755 at 1719.502 kb on + strand, within QEN71_RS07755 at 1719.508 kb on + strand, within QEN71_RS07755 at 1719.508 kb on + strand, within QEN71_RS07755 at 1719.754 kb on + strand at 1719.755 kb on - strand at 1719.755 kb on - strand at 1719.773 kb on - strand at 1719.879 kb on + strand at 1719.879 kb on + strand at 1719.880 kb on - strand at 1720.069 kb on + strand, within QEN71_RS07760 at 1720.069 kb on + strand, within QEN71_RS07760 at 1720.069 kb on + strand, within QEN71_RS07760 at 1720.436 kb on - strand, within QEN71_RS07760 at 1720.538 kb on - strand, within QEN71_RS07760 at 1720.582 kb on - strand, within QEN71_RS07760 at 1720.727 kb on + strand at 1721.277 kb on - strand, within QEN71_RS07765 at 1721.329 kb on - strand, within QEN71_RS07765 at 1721.330 kb on + strand, within QEN71_RS07765 at 1721.330 kb on + strand, within QEN71_RS07765 at 1721.330 kb on + strand, within QEN71_RS07765 at 1721.331 kb on - strand, within QEN71_RS07765 at 1721.331 kb on - strand, within QEN71_RS07765 at 1721.479 kb on - strand at 1721.583 kb on + strand, within QEN71_RS07770 at 1721.583 kb on + strand, within QEN71_RS07770 at 1721.605 kb on - strand, within QEN71_RS07770 at 1721.622 kb on + strand, within QEN71_RS07770 at 1721.656 kb on + strand, within QEN71_RS07770 at 1721.705 kb on + strand, within QEN71_RS07770 at 1721.705 kb on + strand, within QEN71_RS07770 at 1721.706 kb on - strand, within QEN71_RS07770
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 1,719,063 + +0.0 1,719,068 - +2.8 1,719,086 + -0.6 1,719,312 + QEN71_RS07755 0.33 -0.1 1,719,312 + QEN71_RS07755 0.33 -0.4 1,719,502 + QEN71_RS07755 0.58 +0.1 1,719,508 + QEN71_RS07755 0.59 -1.1 1,719,508 + QEN71_RS07755 0.59 -0.7 1,719,754 + +0.4 1,719,755 - -0.9 1,719,755 - -0.6 1,719,773 - +0.2 1,719,879 + +1.1 1,719,879 + -0.4 1,719,880 - -0.5 1,720,069 + QEN71_RS07760 0.15 +0.7 1,720,069 + QEN71_RS07760 0.15 +1.4 1,720,069 + QEN71_RS07760 0.15 -1.2 1,720,436 - QEN71_RS07760 0.57 -1.2 1,720,538 - QEN71_RS07760 0.69 -0.7 1,720,582 - QEN71_RS07760 0.74 -0.3 1,720,727 + +0.9 1,721,277 - QEN71_RS07765 0.65 -1.4 1,721,329 - QEN71_RS07765 0.73 -0.1 1,721,330 + QEN71_RS07765 0.73 +0.1 1,721,330 + QEN71_RS07765 0.73 -0.3 1,721,330 + QEN71_RS07765 0.73 -0.3 1,721,331 - QEN71_RS07765 0.74 -0.6 1,721,331 - QEN71_RS07765 0.74 +0.5 1,721,479 - -0.1 1,721,583 + QEN71_RS07770 0.10 -0.8 1,721,583 + QEN71_RS07770 0.10 -1.8 1,721,605 - QEN71_RS07770 0.14 +1.2 1,721,622 + QEN71_RS07770 0.16 -0.6 1,721,656 + QEN71_RS07770 0.22 -0.6 1,721,705 + QEN71_RS07770 0.29 -0.1 1,721,705 + QEN71_RS07770 0.29 -0.9 1,721,706 - QEN71_RS07770 0.29 +0.4
Or see this region's nucleotide sequence