Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS00135 and QEN71_RS00140 are separated by 99 nucleotides QEN71_RS00140 and QEN71_RS00145 are separated by 294 nucleotides QEN71_RS00145 and QEN71_RS00150 are separated by 54 nucleotides
QEN71_RS00135: QEN71_RS00135 - LysR family transcriptional regulator, at 27,363 to 28,451
_RS00135
QEN71_RS00140: QEN71_RS00140 - DNA topoisomerase III, at 28,551 to 31,211
_RS00140
QEN71_RS00145: QEN71_RS00145 - thioredoxin family protein, at 31,506 to 31,883
_RS00145
QEN71_RS00150: QEN71_RS00150 - DNA-processing protein DprA, at 31,938 to 33,113
_RS00150
Position (kb) 28
29
30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 27.556 kb on - strand, within QEN71_RS00135 at 27.556 kb on - strand, within QEN71_RS00135 at 27.556 kb on - strand, within QEN71_RS00135 at 27.643 kb on + strand, within QEN71_RS00135 at 27.643 kb on + strand, within QEN71_RS00135 at 27.643 kb on + strand, within QEN71_RS00135 at 27.644 kb on - strand, within QEN71_RS00135 at 27.644 kb on - strand, within QEN71_RS00135 at 27.644 kb on - strand, within QEN71_RS00135 at 27.644 kb on - strand, within QEN71_RS00135 at 27.644 kb on - strand, within QEN71_RS00135 at 27.644 kb on - strand, within QEN71_RS00135 at 27.644 kb on - strand, within QEN71_RS00135 at 27.644 kb on - strand, within QEN71_RS00135 at 27.647 kb on + strand, within QEN71_RS00135 at 27.647 kb on + strand, within QEN71_RS00135 at 27.647 kb on + strand, within QEN71_RS00135 at 27.647 kb on + strand, within QEN71_RS00135 at 27.647 kb on + strand, within QEN71_RS00135 at 27.647 kb on + strand, within QEN71_RS00135 at 27.648 kb on - strand, within QEN71_RS00135 at 27.648 kb on - strand, within QEN71_RS00135 at 27.648 kb on - strand, within QEN71_RS00135 at 27.648 kb on - strand, within QEN71_RS00135 at 27.648 kb on - strand, within QEN71_RS00135 at 27.648 kb on - strand, within QEN71_RS00135 at 27.702 kb on + strand, within QEN71_RS00135 at 27.702 kb on + strand, within QEN71_RS00135 at 27.702 kb on + strand, within QEN71_RS00135 at 27.702 kb on + strand, within QEN71_RS00135 at 27.702 kb on + strand, within QEN71_RS00135 at 27.702 kb on + strand, within QEN71_RS00135 at 27.702 kb on + strand, within QEN71_RS00135 at 27.702 kb on + strand, within QEN71_RS00135 at 27.703 kb on - strand, within QEN71_RS00135 at 27.703 kb on - strand, within QEN71_RS00135 at 27.703 kb on - strand, within QEN71_RS00135 at 27.703 kb on - strand, within QEN71_RS00135 at 27.703 kb on - strand, within QEN71_RS00135 at 27.703 kb on - strand, within QEN71_RS00135 at 27.703 kb on - strand, within QEN71_RS00135 at 27.703 kb on - strand, within QEN71_RS00135 at 27.806 kb on + strand, within QEN71_RS00135 at 27.806 kb on + strand, within QEN71_RS00135 at 27.806 kb on + strand, within QEN71_RS00135 at 27.806 kb on + strand, within QEN71_RS00135 at 27.806 kb on + strand, within QEN71_RS00135 at 27.806 kb on + strand, within QEN71_RS00135 at 27.806 kb on + strand, within QEN71_RS00135 at 27.807 kb on - strand, within QEN71_RS00135 at 27.807 kb on - strand, within QEN71_RS00135 at 27.807 kb on - strand, within QEN71_RS00135 at 27.876 kb on + strand, within QEN71_RS00135 at 27.876 kb on + strand, within QEN71_RS00135 at 27.876 kb on + strand, within QEN71_RS00135 at 27.877 kb on - strand, within QEN71_RS00135 at 27.877 kb on - strand, within QEN71_RS00135 at 27.951 kb on + strand, within QEN71_RS00135 at 27.952 kb on - strand, within QEN71_RS00135 at 28.089 kb on + strand, within QEN71_RS00135 at 28.089 kb on + strand, within QEN71_RS00135 at 28.089 kb on + strand, within QEN71_RS00135 at 28.090 kb on - strand, within QEN71_RS00135 at 28.090 kb on - strand, within QEN71_RS00135 at 28.144 kb on - strand, within QEN71_RS00135 at 28.291 kb on + strand, within QEN71_RS00135 at 28.291 kb on + strand, within QEN71_RS00135 at 28.291 kb on + strand, within QEN71_RS00135 at 28.291 kb on + strand, within QEN71_RS00135 at 28.291 kb on + strand, within QEN71_RS00135 at 28.291 kb on + strand, within QEN71_RS00135 at 28.291 kb on + strand, within QEN71_RS00135 at 28.292 kb on - strand, within QEN71_RS00135 at 28.292 kb on - strand, within QEN71_RS00135 at 28.292 kb on - strand, within QEN71_RS00135 at 28.292 kb on - strand, within QEN71_RS00135 at 28.325 kb on + strand, within QEN71_RS00135 at 28.325 kb on + strand, within QEN71_RS00135 at 28.325 kb on + strand, within QEN71_RS00135 at 28.325 kb on + strand, within QEN71_RS00135 at 28.325 kb on + strand, within QEN71_RS00135 at 28.325 kb on + strand, within QEN71_RS00135 at 28.326 kb on - strand, within QEN71_RS00135 at 28.326 kb on - strand, within QEN71_RS00135 at 28.326 kb on - strand, within QEN71_RS00135 at 28.366 kb on + strand at 28.366 kb on + strand at 28.367 kb on - strand at 28.370 kb on + strand at 28.370 kb on + strand at 28.370 kb on + strand at 28.370 kb on + strand at 28.370 kb on + strand at 28.370 kb on + strand at 28.370 kb on + strand at 28.370 kb on + strand at 28.370 kb on + strand at 28.370 kb on + strand at 28.370 kb on + strand at 28.370 kb on + strand at 28.371 kb on - strand at 28.371 kb on - strand at 28.371 kb on - strand at 28.371 kb on - strand at 28.371 kb on - strand at 28.371 kb on - strand at 28.504 kb on + strand at 28.552 kb on + strand at 28.552 kb on + strand at 28.552 kb on + strand at 28.552 kb on + strand at 28.589 kb on + strand at 28.589 kb on + strand at 28.590 kb on - strand at 28.590 kb on - strand at 31.222 kb on - strand at 31.244 kb on - strand at 31.291 kb on - strand at 31.291 kb on - strand at 31.291 kb on - strand at 31.293 kb on - strand at 31.293 kb on - strand at 31.293 kb on - strand at 31.344 kb on + strand at 31.344 kb on + strand at 31.344 kb on + strand at 31.344 kb on + strand at 31.344 kb on + strand at 31.344 kb on + strand at 31.344 kb on + strand at 31.344 kb on + strand at 31.344 kb on + strand at 31.345 kb on - strand at 31.345 kb on - strand at 31.345 kb on - strand at 31.345 kb on - strand at 31.345 kb on - strand at 31.402 kb on + strand at 31.402 kb on + strand at 31.402 kb on + strand at 31.402 kb on + strand at 31.403 kb on - strand at 31.403 kb on - strand at 31.403 kb on - strand at 31.906 kb on + strand at 31.906 kb on + strand at 31.906 kb on + strand at 31.906 kb on + strand at 31.906 kb on + strand at 31.906 kb on + strand at 31.906 kb on + strand at 31.906 kb on + strand at 31.906 kb on + strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.907 kb on - strand at 31.911 kb on + strand at 31.911 kb on + strand at 31.911 kb on + strand at 31.911 kb on + strand at 31.911 kb on + strand at 31.911 kb on + strand at 31.912 kb on - strand at 31.912 kb on - strand at 31.912 kb on - strand at 31.912 kb on - strand at 31.912 kb on - strand at 31.912 kb on - strand at 31.912 kb on - strand at 31.912 kb on - strand at 31.912 kb on - strand at 31.926 kb on + strand at 31.926 kb on + strand at 31.926 kb on + strand at 31.926 kb on + strand at 31.926 kb on + strand at 31.926 kb on + strand at 31.926 kb on + strand at 31.927 kb on - strand at 31.927 kb on - strand at 31.927 kb on - strand at 31.963 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 27,556 - QEN71_RS00135 0.18 +1.9 27,556 - QEN71_RS00135 0.18 +0.8 27,556 - QEN71_RS00135 0.18 +1.1 27,643 + QEN71_RS00135 0.26 +0.5 27,643 + QEN71_RS00135 0.26 +0.2 27,643 + QEN71_RS00135 0.26 -1.5 27,644 - QEN71_RS00135 0.26 -0.3 27,644 - QEN71_RS00135 0.26 +0.8 27,644 - QEN71_RS00135 0.26 -0.5 27,644 - QEN71_RS00135 0.26 -0.3 27,644 - QEN71_RS00135 0.26 +2.6 27,644 - QEN71_RS00135 0.26 +0.7 27,644 - QEN71_RS00135 0.26 -0.2 27,644 - QEN71_RS00135 0.26 +0.2 27,647 + QEN71_RS00135 0.26 -0.0 27,647 + QEN71_RS00135 0.26 +1.2 27,647 + QEN71_RS00135 0.26 +0.5 27,647 + QEN71_RS00135 0.26 -0.3 27,647 + QEN71_RS00135 0.26 +0.9 27,647 + QEN71_RS00135 0.26 -1.1 27,648 - QEN71_RS00135 0.26 +1.3 27,648 - QEN71_RS00135 0.26 +1.6 27,648 - QEN71_RS00135 0.26 +1.0 27,648 - QEN71_RS00135 0.26 +0.2 27,648 - QEN71_RS00135 0.26 -0.4 27,648 - QEN71_RS00135 0.26 -1.1 27,702 + QEN71_RS00135 0.31 -1.4 27,702 + QEN71_RS00135 0.31 -0.9 27,702 + QEN71_RS00135 0.31 +0.1 27,702 + QEN71_RS00135 0.31 +0.1 27,702 + QEN71_RS00135 0.31 -2.1 27,702 + QEN71_RS00135 0.31 -1.3 27,702 + QEN71_RS00135 0.31 -0.3 27,702 + QEN71_RS00135 0.31 -0.3 27,703 - QEN71_RS00135 0.31 -0.8 27,703 - QEN71_RS00135 0.31 -0.3 27,703 - QEN71_RS00135 0.31 -1.9 27,703 - QEN71_RS00135 0.31 -0.8 27,703 - QEN71_RS00135 0.31 +0.8 27,703 - QEN71_RS00135 0.31 +0.8 27,703 - QEN71_RS00135 0.31 -0.2 27,703 - QEN71_RS00135 0.31 -0.3 27,806 + QEN71_RS00135 0.41 -0.9 27,806 + QEN71_RS00135 0.41 -1.4 27,806 + QEN71_RS00135 0.41 +1.6 27,806 + QEN71_RS00135 0.41 -0.1 27,806 + QEN71_RS00135 0.41 +0.2 27,806 + QEN71_RS00135 0.41 +0.2 27,806 + QEN71_RS00135 0.41 -1.1 27,807 - QEN71_RS00135 0.41 +0.4 27,807 - QEN71_RS00135 0.41 -0.3 27,807 - QEN71_RS00135 0.41 +0.2 27,876 + QEN71_RS00135 0.47 -0.9 27,876 + QEN71_RS00135 0.47 +0.9 27,876 + QEN71_RS00135 0.47 -1.2 27,877 - QEN71_RS00135 0.47 -0.3 27,877 - QEN71_RS00135 0.47 -0.6 27,951 + QEN71_RS00135 0.54 +0.5 27,952 - QEN71_RS00135 0.54 -1.3 28,089 + QEN71_RS00135 0.67 -1.3 28,089 + QEN71_RS00135 0.67 -0.1 28,089 + QEN71_RS00135 0.67 -0.5 28,090 - QEN71_RS00135 0.67 +0.7 28,090 - QEN71_RS00135 0.67 -0.3 28,144 - QEN71_RS00135 0.72 +0.7 28,291 + QEN71_RS00135 0.85 -1.5 28,291 + QEN71_RS00135 0.85 -1.0 28,291 + QEN71_RS00135 0.85 -0.8 28,291 + QEN71_RS00135 0.85 -2.0 28,291 + QEN71_RS00135 0.85 -0.5 28,291 + QEN71_RS00135 0.85 -1.4 28,291 + QEN71_RS00135 0.85 -1.5 28,292 - QEN71_RS00135 0.85 +0.4 28,292 - QEN71_RS00135 0.85 +0.3 28,292 - QEN71_RS00135 0.85 +1.4 28,292 - QEN71_RS00135 0.85 -0.4 28,325 + QEN71_RS00135 0.88 +0.1 28,325 + QEN71_RS00135 0.88 -0.2 28,325 + QEN71_RS00135 0.88 -0.6 28,325 + QEN71_RS00135 0.88 -0.5 28,325 + QEN71_RS00135 0.88 +1.1 28,325 + QEN71_RS00135 0.88 -0.0 28,326 - QEN71_RS00135 0.88 +0.6 28,326 - QEN71_RS00135 0.88 -0.2 28,326 - QEN71_RS00135 0.88 -0.8 28,366 + -2.3 28,366 + -0.8 28,367 - -0.6 28,370 + -0.6 28,370 + -0.1 28,370 + -1.0 28,370 + +0.1 28,370 + -1.6 28,370 + -0.3 28,370 + -0.2 28,370 + -0.6 28,370 + -0.5 28,370 + -0.6 28,370 + -0.8 28,370 + -0.7 28,371 - -2.1 28,371 - -0.4 28,371 - +0.8 28,371 - +0.1 28,371 - +0.6 28,371 - -0.4 28,504 + -0.3 28,552 + +0.1 28,552 + -1.4 28,552 + -0.7 28,552 + +0.1 28,589 + +0.7 28,589 + -0.5 28,590 - -0.0 28,590 - -1.3 31,222 - -0.5 31,244 - -2.8 31,291 - +0.3 31,291 - +0.6 31,291 - +1.6 31,293 - +0.5 31,293 - -1.0 31,293 - +0.1 31,344 + +0.5 31,344 + -0.2 31,344 + -0.5 31,344 + +1.1 31,344 + -0.3 31,344 + -0.6 31,344 + +0.7 31,344 + +0.5 31,344 + -1.5 31,345 - -0.6 31,345 - -1.4 31,345 - -1.2 31,345 - -1.4 31,345 - -1.1 31,402 + -0.8 31,402 + -0.3 31,402 + +0.3 31,402 + +0.4 31,403 - -0.2 31,403 - +0.6 31,403 - +0.2 31,906 + -1.2 31,906 + -0.6 31,906 + -0.3 31,906 + +0.1 31,906 + +2.4 31,906 + +0.1 31,906 + -1.5 31,906 + +0.4 31,906 + -0.8 31,907 - +0.1 31,907 - -1.6 31,907 - -0.6 31,907 - -0.2 31,907 - +0.1 31,907 - -0.1 31,907 - +0.1 31,907 - -0.5 31,907 - -0.6 31,907 - -1.6 31,907 - -0.1 31,907 - -0.3 31,907 - -1.5 31,907 - -0.9 31,907 - +0.2 31,907 - +0.7 31,907 - +0.2 31,907 - +0.7 31,907 - -0.2 31,907 - -1.0 31,907 - -0.2 31,911 + -1.9 31,911 + +0.8 31,911 + -0.3 31,911 + +0.7 31,911 + -0.5 31,911 + +1.5 31,912 - +0.2 31,912 - +2.4 31,912 - -2.5 31,912 - -0.5 31,912 - +0.1 31,912 - -0.4 31,912 - +0.3 31,912 - +0.2 31,912 - -0.5 31,926 + +0.3 31,926 + +0.4 31,926 + -0.4 31,926 + +0.8 31,926 + -0.9 31,926 + -0.8 31,926 + -0.3 31,927 - +0.7 31,927 - +1.0 31,927 - +1.5 31,963 + -0.3
Or see this region's nucleotide sequence