Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37290

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS37285 and QEN71_RS37290 are separated by 25 nucleotidesQEN71_RS37290 and QEN71_RS37295 are separated by 86 nucleotides QEN71_RS37285: QEN71_RS37285 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 1,733,132 to 1,733,968 _RS37285 QEN71_RS37290: QEN71_RS37290 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 1,733,994 to 1,734,755 _RS37290 QEN71_RS37295: QEN71_RS37295 - DNA-binding transcriptional regulator KdgR, at 1,734,842 to 1,735,726 _RS37295 Position (kb) 1733 1734 1735Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1733.008 kb on - strandat 1733.008 kb on - strandat 1733.071 kb on - strandat 1733.246 kb on + strand, within QEN71_RS37285at 1733.246 kb on + strand, within QEN71_RS37285at 1733.246 kb on + strand, within QEN71_RS37285at 1733.246 kb on + strand, within QEN71_RS37285at 1733.247 kb on - strand, within QEN71_RS37285at 1733.247 kb on - strand, within QEN71_RS37285at 1733.247 kb on - strand, within QEN71_RS37285at 1733.247 kb on - strand, within QEN71_RS37285at 1733.248 kb on + strand, within QEN71_RS37285at 1733.248 kb on + strand, within QEN71_RS37285at 1733.249 kb on - strand, within QEN71_RS37285at 1733.343 kb on - strand, within QEN71_RS37285at 1733.343 kb on - strand, within QEN71_RS37285at 1733.343 kb on - strand, within QEN71_RS37285at 1733.378 kb on - strand, within QEN71_RS37285at 1733.440 kb on + strand, within QEN71_RS37285at 1733.440 kb on + strand, within QEN71_RS37285at 1733.440 kb on + strand, within QEN71_RS37285at 1733.440 kb on + strand, within QEN71_RS37285at 1733.441 kb on - strand, within QEN71_RS37285at 1733.441 kb on - strand, within QEN71_RS37285at 1733.441 kb on - strand, within QEN71_RS37285at 1733.441 kb on - strand, within QEN71_RS37285at 1733.441 kb on - strand, within QEN71_RS37285at 1733.444 kb on + strand, within QEN71_RS37285at 1733.444 kb on + strand, within QEN71_RS37285at 1733.444 kb on + strand, within QEN71_RS37285at 1733.444 kb on + strand, within QEN71_RS37285at 1733.444 kb on + strand, within QEN71_RS37285at 1733.444 kb on + strand, within QEN71_RS37285at 1733.444 kb on + strand, within QEN71_RS37285at 1733.445 kb on - strand, within QEN71_RS37285at 1733.445 kb on - strand, within QEN71_RS37285at 1733.445 kb on - strand, within QEN71_RS37285at 1733.445 kb on - strand, within QEN71_RS37285at 1733.510 kb on + strand, within QEN71_RS37285at 1733.510 kb on + strand, within QEN71_RS37285at 1733.510 kb on + strand, within QEN71_RS37285at 1733.622 kb on - strand, within QEN71_RS37285at 1733.622 kb on - strand, within QEN71_RS37285at 1733.705 kb on - strand, within QEN71_RS37285at 1733.705 kb on - strand, within QEN71_RS37285at 1733.744 kb on + strand, within QEN71_RS37285at 1733.744 kb on + strand, within QEN71_RS37285at 1733.744 kb on + strand, within QEN71_RS37285at 1733.744 kb on + strand, within QEN71_RS37285at 1733.745 kb on - strand, within QEN71_RS37285at 1733.745 kb on - strand, within QEN71_RS37285at 1733.745 kb on - strand, within QEN71_RS37285at 1733.745 kb on - strand, within QEN71_RS37285at 1733.745 kb on - strand, within QEN71_RS37285at 1733.745 kb on - strand, within QEN71_RS37285at 1733.750 kb on + strand, within QEN71_RS37285at 1733.750 kb on + strand, within QEN71_RS37285at 1733.751 kb on - strand, within QEN71_RS37285at 1733.888 kb on + strandat 1733.888 kb on + strandat 1733.888 kb on + strandat 1733.889 kb on - strandat 1733.889 kb on - strandat 1733.889 kb on - strandat 1733.935 kb on + strandat 1734.051 kb on - strandat 1734.168 kb on + strand, within QEN71_RS37290at 1734.168 kb on + strand, within QEN71_RS37290at 1734.465 kb on + strand, within QEN71_RS37290at 1734.465 kb on + strand, within QEN71_RS37290at 1734.466 kb on - strand, within QEN71_RS37290at 1734.466 kb on - strand, within QEN71_RS37290at 1734.466 kb on - strand, within QEN71_RS37290at 1734.562 kb on - strand, within QEN71_RS37290at 1734.562 kb on - strand, within QEN71_RS37290at 1734.705 kb on + strandat 1734.705 kb on + strandat 1734.719 kb on + strandat 1734.779 kb on + strandat 1734.781 kb on + strandat 1734.782 kb on - strandat 1734.839 kb on + strandat 1734.840 kb on - strandat 1734.841 kb on + strandat 1735.086 kb on - strand, within QEN71_RS37295at 1735.086 kb on - strand, within QEN71_RS37295at 1735.265 kb on + strand, within QEN71_RS37295at 1735.265 kb on + strand, within QEN71_RS37295at 1735.265 kb on + strand, within QEN71_RS37295at 1735.266 kb on - strand, within QEN71_RS37295at 1735.266 kb on - strand, within QEN71_RS37295at 1735.266 kb on - strand, within QEN71_RS37295at 1735.266 kb on - strand, within QEN71_RS37295at 1735.266 kb on - strand, within QEN71_RS37295at 1735.266 kb on - strand, within QEN71_RS37295at 1735.266 kb on - strand, within QEN71_RS37295at 1735.267 kb on + strand, within QEN71_RS37295at 1735.337 kb on - strand, within QEN71_RS37295at 1735.337 kb on - strand, within QEN71_RS37295at 1735.337 kb on - strand, within QEN71_RS37295at 1735.405 kb on + strand, within QEN71_RS37295at 1735.405 kb on + strand, within QEN71_RS37295at 1735.405 kb on + strand, within QEN71_RS37295at 1735.405 kb on + strand, within QEN71_RS37295at 1735.406 kb on - strand, within QEN71_RS37295at 1735.490 kb on + strand, within QEN71_RS37295at 1735.628 kb on + strand, within QEN71_RS37295at 1735.628 kb on + strand, within QEN71_RS37295at 1735.628 kb on + strand, within QEN71_RS37295at 1735.628 kb on + strand, within QEN71_RS37295at 1735.628 kb on + strand, within QEN71_RS37295at 1735.629 kb on - strand, within QEN71_RS37295at 1735.629 kb on - strand, within QEN71_RS37295at 1735.629 kb on - strand, within QEN71_RS37295at 1735.735 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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1,733,008 - +0.6
1,733,008 - -0.8
1,733,071 - -3.0
1,733,246 + QEN71_RS37285 0.14 +0.0
1,733,246 + QEN71_RS37285 0.14 +0.6
1,733,246 + QEN71_RS37285 0.14 -1.2
1,733,246 + QEN71_RS37285 0.14 -0.6
1,733,247 - QEN71_RS37285 0.14 +0.2
1,733,247 - QEN71_RS37285 0.14 -0.0
1,733,247 - QEN71_RS37285 0.14 +0.3
1,733,247 - QEN71_RS37285 0.14 +0.4
1,733,248 + QEN71_RS37285 0.14 -0.3
1,733,248 + QEN71_RS37285 0.14 -0.7
1,733,249 - QEN71_RS37285 0.14 +0.1
1,733,343 - QEN71_RS37285 0.25 -0.3
1,733,343 - QEN71_RS37285 0.25 +0.8
1,733,343 - QEN71_RS37285 0.25 -1.4
1,733,378 - QEN71_RS37285 0.29 +0.3
1,733,440 + QEN71_RS37285 0.37 -1.1
1,733,440 + QEN71_RS37285 0.37 +0.3
1,733,440 + QEN71_RS37285 0.37 +2.2
1,733,440 + QEN71_RS37285 0.37 +0.9
1,733,441 - QEN71_RS37285 0.37 -0.2
1,733,441 - QEN71_RS37285 0.37 -2.0
1,733,441 - QEN71_RS37285 0.37 -0.3
1,733,441 - QEN71_RS37285 0.37 +0.6
1,733,441 - QEN71_RS37285 0.37 -2.4
1,733,444 + QEN71_RS37285 0.37 -0.6
1,733,444 + QEN71_RS37285 0.37 -0.4
1,733,444 + QEN71_RS37285 0.37 +0.1
1,733,444 + QEN71_RS37285 0.37 -1.0
1,733,444 + QEN71_RS37285 0.37 +1.2
1,733,444 + QEN71_RS37285 0.37 -0.2
1,733,444 + QEN71_RS37285 0.37 -0.1
1,733,445 - QEN71_RS37285 0.37 -0.3
1,733,445 - QEN71_RS37285 0.37 -0.1
1,733,445 - QEN71_RS37285 0.37 -1.1
1,733,445 - QEN71_RS37285 0.37 -0.5
1,733,510 + QEN71_RS37285 0.45 +0.6
1,733,510 + QEN71_RS37285 0.45 -0.1
1,733,510 + QEN71_RS37285 0.45 +1.2
1,733,622 - QEN71_RS37285 0.59 +1.6
1,733,622 - QEN71_RS37285 0.59 -1.7
1,733,705 - QEN71_RS37285 0.68 -0.1
1,733,705 - QEN71_RS37285 0.68 -0.2
1,733,744 + QEN71_RS37285 0.73 +0.0
1,733,744 + QEN71_RS37285 0.73 +0.0
1,733,744 + QEN71_RS37285 0.73 -0.7
1,733,744 + QEN71_RS37285 0.73 +0.1
1,733,745 - QEN71_RS37285 0.73 -0.3
1,733,745 - QEN71_RS37285 0.73 -0.1
1,733,745 - QEN71_RS37285 0.73 -0.9
1,733,745 - QEN71_RS37285 0.73 +0.3
1,733,745 - QEN71_RS37285 0.73 -0.3
1,733,745 - QEN71_RS37285 0.73 -0.7
1,733,750 + QEN71_RS37285 0.74 +0.7
1,733,750 + QEN71_RS37285 0.74 -1.5
1,733,751 - QEN71_RS37285 0.74 -0.3
1,733,888 + -0.4
1,733,888 + -1.1
1,733,888 + -1.0
1,733,889 - +0.7
1,733,889 - -0.5
1,733,889 - -1.9
1,733,935 + +0.3
1,734,051 - -0.3
1,734,168 + QEN71_RS37290 0.23 +0.7
1,734,168 + QEN71_RS37290 0.23 +1.1
1,734,465 + QEN71_RS37290 0.62 -0.6
1,734,465 + QEN71_RS37290 0.62 +1.1
1,734,466 - QEN71_RS37290 0.62 -0.8
1,734,466 - QEN71_RS37290 0.62 +0.6
1,734,466 - QEN71_RS37290 0.62 -1.3
1,734,562 - QEN71_RS37290 0.75 +0.1
1,734,562 - QEN71_RS37290 0.75 -0.2
1,734,705 + +0.6
1,734,705 + -0.5
1,734,719 + +1.8
1,734,779 + -0.7
1,734,781 + -0.7
1,734,782 - -1.6
1,734,839 + +1.0
1,734,840 - -0.0
1,734,841 + +0.3
1,735,086 - QEN71_RS37295 0.28 +0.6
1,735,086 - QEN71_RS37295 0.28 +0.0
1,735,265 + QEN71_RS37295 0.48 +0.6
1,735,265 + QEN71_RS37295 0.48 +0.3
1,735,265 + QEN71_RS37295 0.48 -0.5
1,735,266 - QEN71_RS37295 0.48 -0.4
1,735,266 - QEN71_RS37295 0.48 -0.2
1,735,266 - QEN71_RS37295 0.48 +0.9
1,735,266 - QEN71_RS37295 0.48 -0.5
1,735,266 - QEN71_RS37295 0.48 +0.6
1,735,266 - QEN71_RS37295 0.48 -2.4
1,735,266 - QEN71_RS37295 0.48 -0.1
1,735,267 + QEN71_RS37295 0.48 +0.3
1,735,337 - QEN71_RS37295 0.56 -1.2
1,735,337 - QEN71_RS37295 0.56 +0.5
1,735,337 - QEN71_RS37295 0.56 +0.0
1,735,405 + QEN71_RS37295 0.64 +0.7
1,735,405 + QEN71_RS37295 0.64 -0.3
1,735,405 + QEN71_RS37295 0.64 +1.0
1,735,405 + QEN71_RS37295 0.64 -0.1
1,735,406 - QEN71_RS37295 0.64 +0.1
1,735,490 + QEN71_RS37295 0.73 -0.6
1,735,628 + QEN71_RS37295 0.89 -0.2
1,735,628 + QEN71_RS37295 0.89 -1.3
1,735,628 + QEN71_RS37295 0.89 -0.0
1,735,628 + QEN71_RS37295 0.89 -0.4
1,735,628 + QEN71_RS37295 0.89 +1.5
1,735,629 - QEN71_RS37295 0.89 -2.4
1,735,629 - QEN71_RS37295 0.89 +1.6
1,735,629 - QEN71_RS37295 0.89 +0.9
1,735,735 + +1.6

Or see this region's nucleotide sequence