Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS34550 and QEN71_RS34555 are separated by 61 nucleotides QEN71_RS34555 and QEN71_RS34560 are separated by 37 nucleotides QEN71_RS34560 and QEN71_RS34565 are separated by 526 nucleotides
QEN71_RS34550: QEN71_RS34550 - type VI secretion system contractile sheath large subunit, at 1,066,023 to 1,067,516
_RS34550
QEN71_RS34555: QEN71_RS34555 - type VI secretion system contractile sheath small subunit, at 1,067,578 to 1,068,105
_RS34555
QEN71_RS34560: QEN71_RS34560 - type VI secretion system ATPase TssH, at 1,068,143 to 1,070,869
_RS34560
QEN71_RS34565: QEN71_RS34565 - TagK domain-containing protein, at 1,071,396 to 1,072,043
_RS34565
Position (kb)
1068
1069
1070
1071 Strain fitness (log2 ratio)
-2
-1
0
1 at 1067.527 kb on + strand at 1067.527 kb on + strand at 1067.579 kb on + strand at 1067.580 kb on - strand at 1067.702 kb on + strand, within QEN71_RS34555 at 1067.702 kb on + strand, within QEN71_RS34555 at 1067.702 kb on + strand, within QEN71_RS34555 at 1067.702 kb on + strand, within QEN71_RS34555 at 1067.703 kb on - strand, within QEN71_RS34555 at 1067.771 kb on - strand, within QEN71_RS34555 at 1068.660 kb on - strand, within QEN71_RS34560 at 1068.715 kb on - strand, within QEN71_RS34560 at 1068.715 kb on - strand, within QEN71_RS34560 at 1068.715 kb on - strand, within QEN71_RS34560 at 1068.738 kb on + strand, within QEN71_RS34560 at 1068.738 kb on + strand, within QEN71_RS34560 at 1068.848 kb on + strand, within QEN71_RS34560 at 1069.539 kb on - strand, within QEN71_RS34560 at 1069.539 kb on - strand, within QEN71_RS34560 at 1069.564 kb on + strand, within QEN71_RS34560 at 1069.564 kb on + strand, within QEN71_RS34560 at 1069.778 kb on + strand, within QEN71_RS34560 at 1069.778 kb on + strand, within QEN71_RS34560 at 1069.779 kb on - strand, within QEN71_RS34560 at 1069.939 kb on + strand, within QEN71_RS34560 at 1069.966 kb on + strand, within QEN71_RS34560 at 1069.967 kb on - strand, within QEN71_RS34560 at 1069.967 kb on - strand, within QEN71_RS34560 at 1069.971 kb on - strand, within QEN71_RS34560 at 1070.282 kb on - strand, within QEN71_RS34560 at 1070.380 kb on - strand, within QEN71_RS34560 at 1070.380 kb on - strand, within QEN71_RS34560 at 1070.484 kb on - strand, within QEN71_RS34560 at 1070.484 kb on - strand, within QEN71_RS34560 at 1070.735 kb on + strand at 1070.735 kb on + strand at 1071.267 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 1,067,527 + -0.9 1,067,527 + +0.5 1,067,579 + +0.2 1,067,580 - -1.6 1,067,702 + QEN71_RS34555 0.23 -0.0 1,067,702 + QEN71_RS34555 0.23 +0.5 1,067,702 + QEN71_RS34555 0.23 -1.7 1,067,702 + QEN71_RS34555 0.23 +0.9 1,067,703 - QEN71_RS34555 0.24 -0.8 1,067,771 - QEN71_RS34555 0.37 -0.4 1,068,660 - QEN71_RS34560 0.19 -0.1 1,068,715 - QEN71_RS34560 0.21 +0.0 1,068,715 - QEN71_RS34560 0.21 +0.4 1,068,715 - QEN71_RS34560 0.21 -2.0 1,068,738 + QEN71_RS34560 0.22 +0.6 1,068,738 + QEN71_RS34560 0.22 +0.5 1,068,848 + QEN71_RS34560 0.26 +0.1 1,069,539 - QEN71_RS34560 0.51 +1.1 1,069,539 - QEN71_RS34560 0.51 -0.4 1,069,564 + QEN71_RS34560 0.52 -2.0 1,069,564 + QEN71_RS34560 0.52 -0.1 1,069,778 + QEN71_RS34560 0.60 +0.2 1,069,778 + QEN71_RS34560 0.60 +0.9 1,069,779 - QEN71_RS34560 0.60 -0.6 1,069,939 + QEN71_RS34560 0.66 +0.3 1,069,966 + QEN71_RS34560 0.67 +0.6 1,069,967 - QEN71_RS34560 0.67 +1.4 1,069,967 - QEN71_RS34560 0.67 +1.5 1,069,971 - QEN71_RS34560 0.67 +0.7 1,070,282 - QEN71_RS34560 0.78 -0.2 1,070,380 - QEN71_RS34560 0.82 -1.0 1,070,380 - QEN71_RS34560 0.82 -0.3 1,070,484 - QEN71_RS34560 0.86 -0.3 1,070,484 - QEN71_RS34560 0.86 -0.3 1,070,735 + +0.4 1,070,735 + -2.3 1,071,267 + -1.6
Or see this region's nucleotide sequence