Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34560

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34550 and QEN71_RS34555 are separated by 61 nucleotidesQEN71_RS34555 and QEN71_RS34560 are separated by 37 nucleotidesQEN71_RS34560 and QEN71_RS34565 are separated by 526 nucleotides QEN71_RS34550: QEN71_RS34550 - type VI secretion system contractile sheath large subunit, at 1,066,023 to 1,067,516 _RS34550 QEN71_RS34555: QEN71_RS34555 - type VI secretion system contractile sheath small subunit, at 1,067,578 to 1,068,105 _RS34555 QEN71_RS34560: QEN71_RS34560 - type VI secretion system ATPase TssH, at 1,068,143 to 1,070,869 _RS34560 QEN71_RS34565: QEN71_RS34565 - TagK domain-containing protein, at 1,071,396 to 1,072,043 _RS34565 Position (kb) 1068 1069 1070 1071Strain fitness (log2 ratio) -2 -1 0 1at 1067.527 kb on + strandat 1067.527 kb on + strandat 1067.579 kb on + strandat 1067.580 kb on - strandat 1067.702 kb on + strand, within QEN71_RS34555at 1067.702 kb on + strand, within QEN71_RS34555at 1067.702 kb on + strand, within QEN71_RS34555at 1067.702 kb on + strand, within QEN71_RS34555at 1067.703 kb on - strand, within QEN71_RS34555at 1067.771 kb on - strand, within QEN71_RS34555at 1068.660 kb on - strand, within QEN71_RS34560at 1068.715 kb on - strand, within QEN71_RS34560at 1068.715 kb on - strand, within QEN71_RS34560at 1068.715 kb on - strand, within QEN71_RS34560at 1068.738 kb on + strand, within QEN71_RS34560at 1068.738 kb on + strand, within QEN71_RS34560at 1068.848 kb on + strand, within QEN71_RS34560at 1069.539 kb on - strand, within QEN71_RS34560at 1069.539 kb on - strand, within QEN71_RS34560at 1069.564 kb on + strand, within QEN71_RS34560at 1069.564 kb on + strand, within QEN71_RS34560at 1069.778 kb on + strand, within QEN71_RS34560at 1069.778 kb on + strand, within QEN71_RS34560at 1069.779 kb on - strand, within QEN71_RS34560at 1069.939 kb on + strand, within QEN71_RS34560at 1069.966 kb on + strand, within QEN71_RS34560at 1069.967 kb on - strand, within QEN71_RS34560at 1069.967 kb on - strand, within QEN71_RS34560at 1069.971 kb on - strand, within QEN71_RS34560at 1070.282 kb on - strand, within QEN71_RS34560at 1070.380 kb on - strand, within QEN71_RS34560at 1070.380 kb on - strand, within QEN71_RS34560at 1070.484 kb on - strand, within QEN71_RS34560at 1070.484 kb on - strand, within QEN71_RS34560at 1070.735 kb on + strandat 1070.735 kb on + strandat 1071.267 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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1,067,527 + -0.9
1,067,527 + +0.5
1,067,579 + +0.2
1,067,580 - -1.6
1,067,702 + QEN71_RS34555 0.23 -0.0
1,067,702 + QEN71_RS34555 0.23 +0.5
1,067,702 + QEN71_RS34555 0.23 -1.7
1,067,702 + QEN71_RS34555 0.23 +0.9
1,067,703 - QEN71_RS34555 0.24 -0.8
1,067,771 - QEN71_RS34555 0.37 -0.4
1,068,660 - QEN71_RS34560 0.19 -0.1
1,068,715 - QEN71_RS34560 0.21 +0.0
1,068,715 - QEN71_RS34560 0.21 +0.4
1,068,715 - QEN71_RS34560 0.21 -2.0
1,068,738 + QEN71_RS34560 0.22 +0.6
1,068,738 + QEN71_RS34560 0.22 +0.5
1,068,848 + QEN71_RS34560 0.26 +0.1
1,069,539 - QEN71_RS34560 0.51 +1.1
1,069,539 - QEN71_RS34560 0.51 -0.4
1,069,564 + QEN71_RS34560 0.52 -2.0
1,069,564 + QEN71_RS34560 0.52 -0.1
1,069,778 + QEN71_RS34560 0.60 +0.2
1,069,778 + QEN71_RS34560 0.60 +0.9
1,069,779 - QEN71_RS34560 0.60 -0.6
1,069,939 + QEN71_RS34560 0.66 +0.3
1,069,966 + QEN71_RS34560 0.67 +0.6
1,069,967 - QEN71_RS34560 0.67 +1.4
1,069,967 - QEN71_RS34560 0.67 +1.5
1,069,971 - QEN71_RS34560 0.67 +0.7
1,070,282 - QEN71_RS34560 0.78 -0.2
1,070,380 - QEN71_RS34560 0.82 -1.0
1,070,380 - QEN71_RS34560 0.82 -0.3
1,070,484 - QEN71_RS34560 0.86 -0.3
1,070,484 - QEN71_RS34560 0.86 -0.3
1,070,735 + +0.4
1,070,735 + -2.3
1,071,267 + -1.6

Or see this region's nucleotide sequence