Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32735 and QEN71_RS32740 are separated by 39 nucleotides QEN71_RS32740 and QEN71_RS32745 are separated by 24 nucleotides QEN71_RS32745 and QEN71_RS32750 are separated by 426 nucleotides QEN71_RS32750 and QEN71_RS32755 overlap by 26 nucleotides
QEN71_RS32735: QEN71_RS32735 - aspartate kinase, at 678,770 to 679,360
_RS32735
QEN71_RS32740: QEN71_RS32740 - (5-formylfuran-3-yl)methyl phosphate synthase, at 679,400 to 680,098
_RS32740
QEN71_RS32745: QEN71_RS32745 - DUF447 family protein, at 680,123 to 680,734
_RS32745
QEN71_RS32750: QEN71_RS32750 - hypothetical protein, at 681,161 to 681,463
_RS32750
QEN71_RS32755: QEN71_RS32755 - pyrroloquinoline quinone precursor peptide PqqA, at 681,438 to 681,512
_RS32755
Position (kb) 680
681 Strain fitness (log2 ratio) -2
-1
0
1 at 679.269 kb on - strand, within QEN71_RS32735 at 679.269 kb on - strand, within QEN71_RS32735 at 679.286 kb on + strand, within QEN71_RS32735 at 679.286 kb on + strand, within QEN71_RS32735 at 679.573 kb on + strand, within QEN71_RS32740 at 679.611 kb on + strand, within QEN71_RS32740 at 679.611 kb on + strand, within QEN71_RS32740 at 679.612 kb on - strand, within QEN71_RS32740 at 680.131 kb on + strand at 680.131 kb on + strand at 680.132 kb on - strand at 680.132 kb on - strand at 680.271 kb on + strand, within QEN71_RS32745 at 680.271 kb on + strand, within QEN71_RS32745 at 680.271 kb on + strand, within QEN71_RS32745 at 680.272 kb on - strand, within QEN71_RS32745 at 680.462 kb on - strand, within QEN71_RS32745 at 680.480 kb on + strand, within QEN71_RS32745 at 680.491 kb on + strand, within QEN71_RS32745 at 680.556 kb on - strand, within QEN71_RS32745 at 680.751 kb on + strand at 680.771 kb on + strand at 680.833 kb on - strand at 680.833 kb on - strand at 681.089 kb on + strand at 681.090 kb on - strand at 681.090 kb on - strand at 681.191 kb on + strand at 681.454 kb on + strand at 681.454 kb on + strand at 681.454 kb on + strand at 681.454 kb on + strand at 681.455 kb on - strand at 681.455 kb on - strand at 681.455 kb on - strand at 681.455 kb on - strand at 681.455 kb on - strand at 681.490 kb on + strand, within QEN71_RS32755 at 681.500 kb on + strand, within QEN71_RS32755 at 681.500 kb on + strand, within QEN71_RS32755 at 681.501 kb on - strand, within QEN71_RS32755 at 681.512 kb on + strand at 681.647 kb on + strand at 681.647 kb on + strand at 681.674 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 679,269 - QEN71_RS32735 0.84 +0.3 679,269 - QEN71_RS32735 0.84 +0.7 679,286 + QEN71_RS32735 0.87 +0.8 679,286 + QEN71_RS32735 0.87 +0.0 679,573 + QEN71_RS32740 0.25 -0.1 679,611 + QEN71_RS32740 0.30 -0.0 679,611 + QEN71_RS32740 0.30 +0.1 679,612 - QEN71_RS32740 0.30 +0.7 680,131 + -0.0 680,131 + -0.2 680,132 - -0.2 680,132 - -0.5 680,271 + QEN71_RS32745 0.24 +0.7 680,271 + QEN71_RS32745 0.24 -1.5 680,271 + QEN71_RS32745 0.24 +0.2 680,272 - QEN71_RS32745 0.24 +0.2 680,462 - QEN71_RS32745 0.55 -0.4 680,480 + QEN71_RS32745 0.58 -0.6 680,491 + QEN71_RS32745 0.60 -0.2 680,556 - QEN71_RS32745 0.71 +0.5 680,751 + -0.4 680,771 + +0.4 680,833 - -0.6 680,833 - -1.8 681,089 + +0.1 681,090 - +0.1 681,090 - -0.8 681,191 + +1.6 681,454 + -0.1 681,454 + -1.2 681,454 + -0.1 681,454 + -0.2 681,455 - -1.5 681,455 - +0.1 681,455 - -0.5 681,455 - -0.2 681,455 - -0.6 681,490 + QEN71_RS32755 0.69 -0.0 681,500 + QEN71_RS32755 0.83 -1.0 681,500 + QEN71_RS32755 0.83 -0.5 681,501 - QEN71_RS32755 0.84 -1.2 681,512 + -0.6 681,647 + -0.1 681,647 + +0.0 681,674 - +0.1
Or see this region's nucleotide sequence