Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32115 and QEN71_RS32120 are separated by 86 nucleotides QEN71_RS32120 and QEN71_RS32125 are separated by 45 nucleotides QEN71_RS32125 and QEN71_RS32130 are separated by 21 nucleotides
QEN71_RS32115: QEN71_RS32115 - acetoacetyl-CoA reductase, at 548,260 to 549,003
_RS32115
QEN71_RS32120: QEN71_RS32120 - hypothetical protein, at 549,090 to 549,266
_RS32120
QEN71_RS32125: QEN71_RS32125 - hypothetical protein, at 549,312 to 549,470
_RS32125
QEN71_RS32130: QEN71_RS32130 - LysR substrate-binding domain-containing protein, at 549,492 to 550,739
_RS32130
Position (kb) 549
550 Strain fitness (log2 ratio) -2
-1
0
1 at 548.716 kb on + strand, within QEN71_RS32115 at 548.716 kb on + strand, within QEN71_RS32115 at 548.716 kb on + strand, within QEN71_RS32115 at 549.029 kb on + strand at 549.029 kb on + strand at 549.030 kb on - strand at 549.111 kb on + strand, within QEN71_RS32120 at 549.291 kb on + strand at 549.291 kb on + strand at 549.292 kb on - strand at 549.292 kb on - strand at 549.387 kb on + strand, within QEN71_RS32125 at 549.438 kb on - strand, within QEN71_RS32125 at 549.494 kb on - strand at 549.543 kb on + strand at 549.543 kb on + strand at 549.671 kb on - strand, within QEN71_RS32130 at 549.920 kb on + strand, within QEN71_RS32130 at 550.033 kb on + strand, within QEN71_RS32130 at 550.368 kb on - strand, within QEN71_RS32130 at 550.420 kb on - strand, within QEN71_RS32130 at 550.423 kb on + strand, within QEN71_RS32130 at 550.424 kb on - strand, within QEN71_RS32130 at 550.424 kb on - strand, within QEN71_RS32130 at 550.424 kb on - strand, within QEN71_RS32130
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 548,716 + QEN71_RS32115 0.61 -0.2 548,716 + QEN71_RS32115 0.61 +0.4 548,716 + QEN71_RS32115 0.61 -0.3 549,029 + -0.5 549,029 + -0.1 549,030 - -0.0 549,111 + QEN71_RS32120 0.12 -1.6 549,291 + +0.8 549,291 + -0.3 549,292 - -0.2 549,292 - -1.0 549,387 + QEN71_RS32125 0.47 -2.3 549,438 - QEN71_RS32125 0.79 -0.5 549,494 - -0.4 549,543 + +0.1 549,543 + +0.8 549,671 - QEN71_RS32130 0.14 -0.7 549,920 + QEN71_RS32130 0.34 +0.2 550,033 + QEN71_RS32130 0.43 -1.0 550,368 - QEN71_RS32130 0.70 -1.2 550,420 - QEN71_RS32130 0.74 +0.1 550,423 + QEN71_RS32130 0.75 -0.3 550,424 - QEN71_RS32130 0.75 +0.0 550,424 - QEN71_RS32130 0.75 +0.1 550,424 - QEN71_RS32130 0.75 -0.4
Or see this region's nucleotide sequence