Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS29845

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS29840 and QEN71_RS29845 overlap by 4 nucleotidesQEN71_RS29845 and QEN71_RS29850 overlap by 4 nucleotides QEN71_RS29840: QEN71_RS29840 - efflux transporter outer membrane subunit, at 34,591 to 36,084 _RS29840 QEN71_RS29845: QEN71_RS29845 - efflux RND transporter permease subunit, at 36,081 to 39,173 _RS29845 QEN71_RS29850: QEN71_RS29850 - efflux RND transporter permease subunit, at 39,170 to 42,283 _RS29850 Position (kb) 36 37 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 35.093 kb on + strand, within QEN71_RS29840at 35.094 kb on - strand, within QEN71_RS29840at 35.126 kb on + strand, within QEN71_RS29840at 35.126 kb on + strand, within QEN71_RS29840at 35.127 kb on - strand, within QEN71_RS29840at 35.291 kb on + strand, within QEN71_RS29840at 35.372 kb on + strand, within QEN71_RS29840at 35.486 kb on + strand, within QEN71_RS29840at 35.648 kb on + strand, within QEN71_RS29840at 36.139 kb on + strandat 36.139 kb on + strandat 36.361 kb on + strandat 36.466 kb on + strand, within QEN71_RS29845at 36.737 kb on - strand, within QEN71_RS29845at 36.747 kb on + strand, within QEN71_RS29845at 36.886 kb on + strand, within QEN71_RS29845at 36.887 kb on - strand, within QEN71_RS29845at 36.919 kb on + strand, within QEN71_RS29845at 37.367 kb on + strand, within QEN71_RS29845at 37.368 kb on - strand, within QEN71_RS29845at 37.368 kb on - strand, within QEN71_RS29845at 37.368 kb on - strand, within QEN71_RS29845at 38.452 kb on + strand, within QEN71_RS29845at 38.453 kb on - strand, within QEN71_RS29845at 38.494 kb on + strand, within QEN71_RS29845at 38.495 kb on - strand, within QEN71_RS29845at 38.558 kb on + strand, within QEN71_RS29845at 38.584 kb on + strand, within QEN71_RS29845at 38.710 kb on + strand, within QEN71_RS29845at 38.710 kb on + strand, within QEN71_RS29845at 38.710 kb on + strand, within QEN71_RS29845at 38.710 kb on + strand, within QEN71_RS29845at 38.711 kb on - strand, within QEN71_RS29845at 38.711 kb on - strand, within QEN71_RS29845at 38.748 kb on + strand, within QEN71_RS29845at 38.748 kb on + strand, within QEN71_RS29845at 38.748 kb on + strand, within QEN71_RS29845at 38.788 kb on + strand, within QEN71_RS29845at 38.788 kb on + strand, within QEN71_RS29845at 39.002 kb on + strandat 39.126 kb on + strandat 39.639 kb on + strand, within QEN71_RS29850at 39.926 kb on - strand, within QEN71_RS29850at 39.926 kb on - strand, within QEN71_RS29850at 39.975 kb on + strand, within QEN71_RS29850at 39.975 kb on + strand, within QEN71_RS29850at 39.975 kb on + strand, within QEN71_RS29850at 39.975 kb on + strand, within QEN71_RS29850at 39.975 kb on + strand, within QEN71_RS29850at 39.975 kb on + strand, within QEN71_RS29850at 39.976 kb on - strand, within QEN71_RS29850at 40.044 kb on + strand, within QEN71_RS29850at 40.060 kb on + strand, within QEN71_RS29850at 40.062 kb on + strand, within QEN71_RS29850at 40.062 kb on + strand, within QEN71_RS29850at 40.062 kb on + strand, within QEN71_RS29850at 40.063 kb on - strand, within QEN71_RS29850at 40.063 kb on - strand, within QEN71_RS29850at 40.063 kb on - strand, within QEN71_RS29850at 40.063 kb on - strand, within QEN71_RS29850at 40.063 kb on - strand, within QEN71_RS29850at 40.099 kb on - strand, within QEN71_RS29850at 40.099 kb on - strand, within QEN71_RS29850

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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35,093 + QEN71_RS29840 0.34 +1.0
35,094 - QEN71_RS29840 0.34 -0.6
35,126 + QEN71_RS29840 0.36 -0.5
35,126 + QEN71_RS29840 0.36 +0.0
35,127 - QEN71_RS29840 0.36 -1.6
35,291 + QEN71_RS29840 0.47 -0.6
35,372 + QEN71_RS29840 0.52 -0.8
35,486 + QEN71_RS29840 0.60 -0.8
35,648 + QEN71_RS29840 0.71 -0.2
36,139 + -0.8
36,139 + +0.6
36,361 + -0.2
36,466 + QEN71_RS29845 0.12 +0.0
36,737 - QEN71_RS29845 0.21 +0.1
36,747 + QEN71_RS29845 0.22 -1.8
36,886 + QEN71_RS29845 0.26 +0.0
36,887 - QEN71_RS29845 0.26 -0.4
36,919 + QEN71_RS29845 0.27 +0.4
37,367 + QEN71_RS29845 0.42 +1.0
37,368 - QEN71_RS29845 0.42 -0.9
37,368 - QEN71_RS29845 0.42 -0.3
37,368 - QEN71_RS29845 0.42 +0.1
38,452 + QEN71_RS29845 0.77 -0.8
38,453 - QEN71_RS29845 0.77 +1.3
38,494 + QEN71_RS29845 0.78 +1.5
38,495 - QEN71_RS29845 0.78 -0.4
38,558 + QEN71_RS29845 0.80 +1.0
38,584 + QEN71_RS29845 0.81 -1.2
38,710 + QEN71_RS29845 0.85 -0.1
38,710 + QEN71_RS29845 0.85 +1.8
38,710 + QEN71_RS29845 0.85 -0.6
38,710 + QEN71_RS29845 0.85 -0.0
38,711 - QEN71_RS29845 0.85 -1.4
38,711 - QEN71_RS29845 0.85 -1.9
38,748 + QEN71_RS29845 0.86 -0.3
38,748 + QEN71_RS29845 0.86 -0.6
38,748 + QEN71_RS29845 0.86 +0.2
38,788 + QEN71_RS29845 0.88 -0.1
38,788 + QEN71_RS29845 0.88 -0.3
39,002 + -0.6
39,126 + -1.4
39,639 + QEN71_RS29850 0.15 -1.0
39,926 - QEN71_RS29850 0.24 -0.2
39,926 - QEN71_RS29850 0.24 +0.4
39,975 + QEN71_RS29850 0.26 +0.1
39,975 + QEN71_RS29850 0.26 -0.6
39,975 + QEN71_RS29850 0.26 +1.2
39,975 + QEN71_RS29850 0.26 +0.8
39,975 + QEN71_RS29850 0.26 -0.3
39,975 + QEN71_RS29850 0.26 -0.6
39,976 - QEN71_RS29850 0.26 +0.3
40,044 + QEN71_RS29850 0.28 +0.2
40,060 + QEN71_RS29850 0.29 -0.7
40,062 + QEN71_RS29850 0.29 -0.1
40,062 + QEN71_RS29850 0.29 +0.2
40,062 + QEN71_RS29850 0.29 +0.0
40,063 - QEN71_RS29850 0.29 -0.0
40,063 - QEN71_RS29850 0.29 -0.5
40,063 - QEN71_RS29850 0.29 +0.3
40,063 - QEN71_RS29850 0.29 +0.9
40,063 - QEN71_RS29850 0.29 +0.8
40,099 - QEN71_RS29850 0.30 -0.1
40,099 - QEN71_RS29850 0.30 +0.1

Or see this region's nucleotide sequence