Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS25425

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS25420 and QEN71_RS25425 overlap by 4 nucleotidesQEN71_RS25425 and QEN71_RS25430 are separated by 30 nucleotides QEN71_RS25420: QEN71_RS25420 - oligosaccharide flippase family protein, at 5,654,479 to 5,655,741 _RS25420 QEN71_RS25425: QEN71_RS25425 - glycosyltransferase, at 5,655,738 to 5,656,586 _RS25425 QEN71_RS25430: QEN71_RS25430 - glycosyltransferase family 4 protein, at 5,656,617 to 5,657,789 _RS25430 Position (kb) 5655 5656 5657Strain fitness (log2 ratio) -3 -2 -1 0 1at 5654.930 kb on - strand, within QEN71_RS25420at 5654.930 kb on - strand, within QEN71_RS25420at 5654.982 kb on - strand, within QEN71_RS25420at 5655.080 kb on - strand, within QEN71_RS25420at 5655.080 kb on - strand, within QEN71_RS25420at 5655.080 kb on - strand, within QEN71_RS25420at 5655.080 kb on - strand, within QEN71_RS25420at 5655.187 kb on + strand, within QEN71_RS25420at 5655.187 kb on + strand, within QEN71_RS25420at 5655.187 kb on + strand, within QEN71_RS25420at 5655.187 kb on + strand, within QEN71_RS25420at 5655.188 kb on - strand, within QEN71_RS25420at 5655.188 kb on - strand, within QEN71_RS25420at 5655.188 kb on - strand, within QEN71_RS25420at 5655.188 kb on - strand, within QEN71_RS25420at 5655.188 kb on - strand, within QEN71_RS25420at 5655.188 kb on - strand, within QEN71_RS25420at 5655.490 kb on - strand, within QEN71_RS25420at 5655.490 kb on - strand, within QEN71_RS25420at 5655.715 kb on + strandat 5655.715 kb on + strandat 5655.716 kb on - strandat 5655.716 kb on - strandat 5655.716 kb on - strandat 5655.724 kb on + strandat 5655.819 kb on + strandat 5655.820 kb on - strandat 5656.287 kb on + strand, within QEN71_RS25425at 5656.287 kb on + strand, within QEN71_RS25425at 5656.299 kb on + strand, within QEN71_RS25425at 5656.299 kb on + strand, within QEN71_RS25425at 5656.300 kb on - strand, within QEN71_RS25425at 5656.347 kb on + strand, within QEN71_RS25425at 5656.381 kb on - strand, within QEN71_RS25425at 5656.381 kb on - strand, within QEN71_RS25425at 5656.381 kb on - strand, within QEN71_RS25425at 5656.381 kb on - strand, within QEN71_RS25425at 5656.384 kb on - strand, within QEN71_RS25425at 5656.461 kb on + strand, within QEN71_RS25425at 5656.475 kb on + strand, within QEN71_RS25425at 5656.531 kb on - strandat 5656.564 kb on - strandat 5656.564 kb on - strandat 5656.686 kb on + strandat 5656.686 kb on + strandat 5656.686 kb on + strandat 5656.686 kb on + strandat 5656.686 kb on + strandat 5656.687 kb on - strandat 5656.687 kb on - strandat 5656.908 kb on + strand, within QEN71_RS25430at 5656.909 kb on - strand, within QEN71_RS25430at 5656.925 kb on + strand, within QEN71_RS25430at 5656.925 kb on + strand, within QEN71_RS25430at 5656.926 kb on - strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.993 kb on - strand, within QEN71_RS25430at 5657.000 kb on + strand, within QEN71_RS25430at 5657.071 kb on + strand, within QEN71_RS25430at 5657.072 kb on - strand, within QEN71_RS25430at 5657.072 kb on - strand, within QEN71_RS25430at 5657.246 kb on - strand, within QEN71_RS25430at 5657.248 kb on + strand, within QEN71_RS25430at 5657.248 kb on + strand, within QEN71_RS25430at 5657.248 kb on + strand, within QEN71_RS25430at 5657.248 kb on + strand, within QEN71_RS25430at 5657.249 kb on - strand, within QEN71_RS25430at 5657.249 kb on - strand, within QEN71_RS25430at 5657.270 kb on + strand, within QEN71_RS25430at 5657.286 kb on + strand, within QEN71_RS25430at 5657.287 kb on - strand, within QEN71_RS25430at 5657.287 kb on - strand, within QEN71_RS25430at 5657.287 kb on - strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.320 kb on - strand, within QEN71_RS25430at 5657.320 kb on - strand, within QEN71_RS25430at 5657.424 kb on + strand, within QEN71_RS25430at 5657.424 kb on + strand, within QEN71_RS25430at 5657.425 kb on - strand, within QEN71_RS25430at 5657.425 kb on - strand, within QEN71_RS25430at 5657.491 kb on - strand, within QEN71_RS25430

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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5,654,930 - QEN71_RS25420 0.36 -0.3
5,654,930 - QEN71_RS25420 0.36 -1.0
5,654,982 - QEN71_RS25420 0.40 -0.0
5,655,080 - QEN71_RS25420 0.48 -1.2
5,655,080 - QEN71_RS25420 0.48 -0.9
5,655,080 - QEN71_RS25420 0.48 -1.5
5,655,080 - QEN71_RS25420 0.48 -2.9
5,655,187 + QEN71_RS25420 0.56 -1.2
5,655,187 + QEN71_RS25420 0.56 -0.3
5,655,187 + QEN71_RS25420 0.56 -1.8
5,655,187 + QEN71_RS25420 0.56 -1.5
5,655,188 - QEN71_RS25420 0.56 -2.3
5,655,188 - QEN71_RS25420 0.56 -0.6
5,655,188 - QEN71_RS25420 0.56 -2.3
5,655,188 - QEN71_RS25420 0.56 -0.3
5,655,188 - QEN71_RS25420 0.56 -0.6
5,655,188 - QEN71_RS25420 0.56 -2.6
5,655,490 - QEN71_RS25420 0.80 -0.3
5,655,490 - QEN71_RS25420 0.80 -0.9
5,655,715 + +0.4
5,655,715 + -0.0
5,655,716 - -0.7
5,655,716 - -0.1
5,655,716 - -0.8
5,655,724 + +0.5
5,655,819 + -0.3
5,655,820 - -2.6
5,656,287 + QEN71_RS25425 0.65 -1.0
5,656,287 + QEN71_RS25425 0.65 -2.3
5,656,299 + QEN71_RS25425 0.66 -0.0
5,656,299 + QEN71_RS25425 0.66 -1.3
5,656,300 - QEN71_RS25425 0.66 -1.0
5,656,347 + QEN71_RS25425 0.72 -0.6
5,656,381 - QEN71_RS25425 0.76 -0.1
5,656,381 - QEN71_RS25425 0.76 -0.4
5,656,381 - QEN71_RS25425 0.76 -0.4
5,656,381 - QEN71_RS25425 0.76 -0.6
5,656,384 - QEN71_RS25425 0.76 -0.1
5,656,461 + QEN71_RS25425 0.85 -0.0
5,656,475 + QEN71_RS25425 0.87 -1.5
5,656,531 - -1.0
5,656,564 - -0.6
5,656,564 - -0.9
5,656,686 + -0.3
5,656,686 + -0.3
5,656,686 + -1.7
5,656,686 + +0.6
5,656,686 + -2.2
5,656,687 - -0.8
5,656,687 - -0.6
5,656,908 + QEN71_RS25430 0.25 -1.8
5,656,909 - QEN71_RS25430 0.25 -1.5
5,656,925 + QEN71_RS25430 0.26 -0.6
5,656,925 + QEN71_RS25430 0.26 -1.2
5,656,926 - QEN71_RS25430 0.26 -0.5
5,656,929 + QEN71_RS25430 0.27 -1.2
5,656,929 + QEN71_RS25430 0.27 -0.9
5,656,929 + QEN71_RS25430 0.27 -1.0
5,656,929 + QEN71_RS25430 0.27 +0.0
5,656,929 + QEN71_RS25430 0.27 -0.5
5,656,929 + QEN71_RS25430 0.27 -1.0
5,656,929 + QEN71_RS25430 0.27 -1.6
5,656,930 - QEN71_RS25430 0.27 +0.8
5,656,930 - QEN71_RS25430 0.27 -0.3
5,656,930 - QEN71_RS25430 0.27 -1.9
5,656,930 - QEN71_RS25430 0.27 -2.1
5,656,930 - QEN71_RS25430 0.27 -0.5
5,656,930 - QEN71_RS25430 0.27 -1.2
5,656,993 - QEN71_RS25430 0.32 -1.3
5,657,000 + QEN71_RS25430 0.33 +1.0
5,657,071 + QEN71_RS25430 0.39 -1.3
5,657,072 - QEN71_RS25430 0.39 -1.3
5,657,072 - QEN71_RS25430 0.39 -0.7
5,657,246 - QEN71_RS25430 0.54 -1.0
5,657,248 + QEN71_RS25430 0.54 -1.8
5,657,248 + QEN71_RS25430 0.54 -0.8
5,657,248 + QEN71_RS25430 0.54 -1.2
5,657,248 + QEN71_RS25430 0.54 -0.9
5,657,249 - QEN71_RS25430 0.54 -1.7
5,657,249 - QEN71_RS25430 0.54 -0.2
5,657,270 + QEN71_RS25430 0.56 -0.9
5,657,286 + QEN71_RS25430 0.57 -1.6
5,657,287 - QEN71_RS25430 0.57 -0.7
5,657,287 - QEN71_RS25430 0.57 -0.3
5,657,287 - QEN71_RS25430 0.57 -0.1
5,657,319 + QEN71_RS25430 0.60 -0.3
5,657,319 + QEN71_RS25430 0.60 -0.3
5,657,319 + QEN71_RS25430 0.60 -1.9
5,657,319 + QEN71_RS25430 0.60 -1.0
5,657,319 + QEN71_RS25430 0.60 +0.9
5,657,319 + QEN71_RS25430 0.60 -2.0
5,657,319 + QEN71_RS25430 0.60 -1.4
5,657,319 + QEN71_RS25430 0.60 -1.8
5,657,319 + QEN71_RS25430 0.60 +0.6
5,657,319 + QEN71_RS25430 0.60 -1.0
5,657,319 + QEN71_RS25430 0.60 -2.1
5,657,319 + QEN71_RS25430 0.60 -0.7
5,657,319 + QEN71_RS25430 0.60 -1.0
5,657,320 - QEN71_RS25430 0.60 -1.5
5,657,320 - QEN71_RS25430 0.60 +0.1
5,657,424 + QEN71_RS25430 0.69 -2.2
5,657,424 + QEN71_RS25430 0.69 -0.7
5,657,425 - QEN71_RS25430 0.69 +0.0
5,657,425 - QEN71_RS25430 0.69 -0.3
5,657,491 - QEN71_RS25430 0.75 +1.1

Or see this region's nucleotide sequence