Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS23950

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS23940 and QEN71_RS23945 are separated by 469 nucleotidesQEN71_RS23945 and QEN71_RS23950 are separated by 206 nucleotidesQEN71_RS23950 and QEN71_RS23955 are separated by 305 nucleotidesQEN71_RS23955 and QEN71_RS23960 are separated by 59 nucleotidesQEN71_RS23960 and QEN71_RS23965 are separated by 64 nucleotides QEN71_RS23940: QEN71_RS23940 - translesion DNA synthesis-associated protein ImuA, at 5,330,313 to 5,331,020 _RS23940 QEN71_RS23945: QEN71_RS23945 - 5S ribosomal RNA, at 5,331,490 to 5,331,603 _RS23945 QEN71_RS23950: QEN71_RS23950 - 23S ribosomal RNA, at 5,331,810 to 5,334,690 _RS23950 QEN71_RS23955: QEN71_RS23955 - tRNA-Ala, at 5,334,996 to 5,335,071 _RS23955 QEN71_RS23960: QEN71_RS23960 - tRNA-Ile, at 5,335,131 to 5,335,207 _RS23960 QEN71_RS23965: QEN71_RS23965 - 16S ribosomal RNA, at 5,335,272 to 5,336,802 _RS23965 Position (kb) 5331 5332 5333 5334 5335Strain fitness (log2 ratio) -2 -1 0 1 2at 5330.841 kb on + strand, within QEN71_RS23940at 5330.977 kb on - strandat 5331.027 kb on - strandat 5331.035 kb on - strandat 5331.043 kb on - strandat 5331.048 kb on + strandat 5331.136 kb on + strandat 5331.137 kb on - strandat 5331.190 kb on - strandat 5331.206 kb on + strandat 5331.207 kb on - strandat 5331.230 kb on + strandat 5331.230 kb on + strandat 5331.230 kb on + strandat 5331.230 kb on + strandat 5331.230 kb on + strandat 5331.230 kb on + strandat 5331.230 kb on + strandat 5331.230 kb on + strandat 5331.230 kb on + strandat 5331.231 kb on - strandat 5331.231 kb on - strandat 5331.231 kb on - strandat 5331.231 kb on - strandat 5331.231 kb on - strandat 5331.231 kb on - strandat 5331.231 kb on - strandat 5331.236 kb on + strandat 5331.236 kb on + strandat 5331.236 kb on + strandat 5331.236 kb on + strandat 5331.237 kb on - strandat 5331.237 kb on - strandat 5331.237 kb on - strandat 5331.237 kb on - strandat 5331.237 kb on - strandat 5331.237 kb on - strandat 5331.320 kb on + strandat 5331.321 kb on - strandat 5331.321 kb on - strandat 5331.338 kb on - strandat 5331.429 kb on - strandat 5331.501 kb on - strandat 5331.501 kb on - strandat 5331.505 kb on - strand, within QEN71_RS23945at 5331.505 kb on - strand, within QEN71_RS23945at 5331.505 kb on - strand, within QEN71_RS23945at 5331.505 kb on - strand, within QEN71_RS23945

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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5,330,841 + QEN71_RS23940 0.75 -1.9
5,330,977 - -2.4
5,331,027 - +0.4
5,331,035 - +0.4
5,331,043 - +1.0
5,331,048 + -1.2
5,331,136 + -0.0
5,331,137 - -0.5
5,331,190 - +0.0
5,331,206 + -0.4
5,331,207 - +0.2
5,331,230 + +1.4
5,331,230 + -1.2
5,331,230 + +0.0
5,331,230 + -1.2
5,331,230 + -0.9
5,331,230 + -0.6
5,331,230 + -0.1
5,331,230 + -2.0
5,331,230 + +0.4
5,331,231 - +2.1
5,331,231 - -1.8
5,331,231 - -0.0
5,331,231 - -0.0
5,331,231 - +0.4
5,331,231 - +1.6
5,331,231 - -1.6
5,331,236 + -2.0
5,331,236 + +0.1
5,331,236 + -0.5
5,331,236 + -0.4
5,331,237 - +0.1
5,331,237 - +1.0
5,331,237 - +0.5
5,331,237 - -0.4
5,331,237 - -0.6
5,331,237 - +0.5
5,331,320 + -0.5
5,331,321 - -0.8
5,331,321 - +0.0
5,331,338 - +0.3
5,331,429 - +0.2
5,331,501 - -0.4
5,331,501 - -2.3
5,331,505 - QEN71_RS23945 0.13 -1.4
5,331,505 - QEN71_RS23945 0.13 -1.4
5,331,505 - QEN71_RS23945 0.13 -0.6
5,331,505 - QEN71_RS23945 0.13 -0.9

Or see this region's nucleotide sequence