Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS17460 and QEN71_RS17465 are separated by 8 nucleotides QEN71_RS17465 and QEN71_RS17470 are separated by 32 nucleotides QEN71_RS17470 and QEN71_RS17475 overlap by 20 nucleotides QEN71_RS17475 and QEN71_RS17480 are separated by 19 nucleotides
QEN71_RS17460: QEN71_RS17460 - pilus assembly protein TadG-related protein, at 3,885,417 to 3,886,910
_RS17460
QEN71_RS17465: QEN71_RS17465 - hypothetical protein, at 3,886,919 to 3,887,719
_RS17465
QEN71_RS17470: QEN71_RS17470 - hypothetical protein, at 3,887,752 to 3,888,417
_RS17470
QEN71_RS17475: QEN71_RS17475 - hypothetical protein, at 3,888,398 to 3,888,595
_RS17475
QEN71_RS17480: QEN71_RS17480 - Flp pilus assembly protein CpaB, at 3,888,615 to 3,889,601
_RS17480
Position (kb)
3887
3888
3889 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3886.975 kb on + strand at 3886.976 kb on - strand at 3887.067 kb on - strand, within QEN71_RS17465 at 3887.133 kb on - strand, within QEN71_RS17465 at 3887.184 kb on + strand, within QEN71_RS17465 at 3887.185 kb on - strand, within QEN71_RS17465 at 3887.337 kb on - strand, within QEN71_RS17465 at 3887.337 kb on - strand, within QEN71_RS17465 at 3887.459 kb on - strand, within QEN71_RS17465 at 3887.528 kb on - strand, within QEN71_RS17465 at 3887.643 kb on - strand at 3887.643 kb on - strand at 3887.866 kb on + strand, within QEN71_RS17470 at 3887.866 kb on + strand, within QEN71_RS17470 at 3888.004 kb on + strand, within QEN71_RS17470 at 3888.004 kb on + strand, within QEN71_RS17470 at 3888.569 kb on + strand, within QEN71_RS17475 at 3888.580 kb on - strand at 3888.580 kb on - strand at 3888.588 kb on + strand at 3888.711 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 3,886,975 + -0.8 3,886,976 - +0.6 3,887,067 - QEN71_RS17465 0.18 +0.0 3,887,133 - QEN71_RS17465 0.27 -0.0 3,887,184 + QEN71_RS17465 0.33 -1.6 3,887,185 - QEN71_RS17465 0.33 -1.2 3,887,337 - QEN71_RS17465 0.52 -1.2 3,887,337 - QEN71_RS17465 0.52 +0.1 3,887,459 - QEN71_RS17465 0.67 +1.4 3,887,528 - QEN71_RS17465 0.76 -0.0 3,887,643 - -0.3 3,887,643 - +1.1 3,887,866 + QEN71_RS17470 0.17 -3.7 3,887,866 + QEN71_RS17470 0.17 -1.2 3,888,004 + QEN71_RS17470 0.38 -1.5 3,888,004 + QEN71_RS17470 0.38 +0.8 3,888,569 + QEN71_RS17475 0.86 -0.0 3,888,580 - -0.6 3,888,580 - +0.4 3,888,588 + -0.0 3,888,711 + -0.3
Or see this region's nucleotide sequence