Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS11610

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS11600 and QEN71_RS11605 are separated by 143 nucleotidesQEN71_RS11605 and QEN71_RS11610 are separated by 96 nucleotidesQEN71_RS11610 and QEN71_RS11615 are separated by 402 nucleotides QEN71_RS11600: QEN71_RS11600 - MFS transporter, at 2,586,009 to 2,587,337 _RS11600 QEN71_RS11605: QEN71_RS11605 - SDR family NAD(P)-dependent oxidoreductase, at 2,587,481 to 2,588,230 _RS11605 QEN71_RS11610: QEN71_RS11610 - LysR substrate-binding domain-containing protein, at 2,588,327 to 2,589,241 _RS11610 QEN71_RS11615: QEN71_RS11615 - H-NS family nucleoid-associated regulatory protein, at 2,589,644 to 2,590,405 _RS11615 Position (kb) 2588 2589 2590Strain fitness (log2 ratio) -2 -1 0 1 2at 2587.406 kb on - strandat 2587.408 kb on - strandat 2587.530 kb on + strandat 2587.530 kb on + strandat 2587.530 kb on + strandat 2587.530 kb on + strandat 2587.531 kb on - strandat 2587.768 kb on - strand, within QEN71_RS11605at 2587.878 kb on + strand, within QEN71_RS11605at 2587.878 kb on + strand, within QEN71_RS11605at 2587.878 kb on + strand, within QEN71_RS11605at 2587.878 kb on + strand, within QEN71_RS11605at 2587.879 kb on - strand, within QEN71_RS11605at 2587.879 kb on - strand, within QEN71_RS11605at 2587.879 kb on - strand, within QEN71_RS11605at 2587.879 kb on - strand, within QEN71_RS11605at 2587.879 kb on - strand, within QEN71_RS11605at 2588.026 kb on + strand, within QEN71_RS11605at 2588.026 kb on + strand, within QEN71_RS11605at 2588.026 kb on + strand, within QEN71_RS11605at 2588.253 kb on + strandat 2588.253 kb on + strandat 2588.253 kb on + strandat 2588.253 kb on + strandat 2588.254 kb on - strandat 2588.254 kb on - strandat 2588.254 kb on - strandat 2588.254 kb on - strandat 2588.254 kb on - strandat 2588.259 kb on + strandat 2588.260 kb on - strandat 2588.402 kb on + strandat 2588.577 kb on + strand, within QEN71_RS11610at 2588.577 kb on + strand, within QEN71_RS11610at 2588.577 kb on + strand, within QEN71_RS11610at 2588.577 kb on + strand, within QEN71_RS11610at 2588.577 kb on + strand, within QEN71_RS11610at 2588.577 kb on + strand, within QEN71_RS11610at 2588.577 kb on + strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.578 kb on - strand, within QEN71_RS11610at 2588.730 kb on + strand, within QEN71_RS11610at 2588.731 kb on - strand, within QEN71_RS11610at 2588.826 kb on + strand, within QEN71_RS11610at 2588.826 kb on + strand, within QEN71_RS11610at 2588.826 kb on + strand, within QEN71_RS11610at 2588.827 kb on - strand, within QEN71_RS11610at 2588.827 kb on - strand, within QEN71_RS11610at 2588.829 kb on + strand, within QEN71_RS11610at 2588.829 kb on + strand, within QEN71_RS11610at 2588.857 kb on - strand, within QEN71_RS11610at 2589.029 kb on + strand, within QEN71_RS11610at 2589.042 kb on + strand, within QEN71_RS11610at 2589.043 kb on - strand, within QEN71_RS11610at 2589.043 kb on - strand, within QEN71_RS11610at 2589.214 kb on + strandat 2589.235 kb on + strandat 2589.235 kb on + strandat 2589.235 kb on + strandat 2589.236 kb on - strandat 2589.395 kb on + strandat 2589.537 kb on - strandat 2589.628 kb on - strandat 2589.630 kb on + strandat 2589.630 kb on + strandat 2589.630 kb on + strandat 2589.631 kb on - strandat 2589.631 kb on - strandat 2589.631 kb on - strandat 2589.631 kb on - strandat 2589.634 kb on + strandat 2589.634 kb on + strandat 2589.634 kb on + strandat 2589.634 kb on + strandat 2589.634 kb on + strandat 2589.635 kb on - strandat 2589.635 kb on - strandat 2589.635 kb on - strandat 2590.003 kb on - strand, within QEN71_RS11615at 2590.003 kb on - strand, within QEN71_RS11615at 2590.095 kb on + strand, within QEN71_RS11615

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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2,587,406 - +2.3
2,587,408 - +0.5
2,587,530 + -0.7
2,587,530 + -0.8
2,587,530 + -2.3
2,587,530 + +0.1
2,587,531 - +0.6
2,587,768 - QEN71_RS11605 0.38 -0.1
2,587,878 + QEN71_RS11605 0.53 +0.7
2,587,878 + QEN71_RS11605 0.53 -0.7
2,587,878 + QEN71_RS11605 0.53 +0.6
2,587,878 + QEN71_RS11605 0.53 +0.3
2,587,879 - QEN71_RS11605 0.53 +1.0
2,587,879 - QEN71_RS11605 0.53 -0.6
2,587,879 - QEN71_RS11605 0.53 -2.2
2,587,879 - QEN71_RS11605 0.53 +0.7
2,587,879 - QEN71_RS11605 0.53 +1.7
2,588,026 + QEN71_RS11605 0.73 -1.2
2,588,026 + QEN71_RS11605 0.73 -0.3
2,588,026 + QEN71_RS11605 0.73 +0.5
2,588,253 + -0.5
2,588,253 + +0.9
2,588,253 + +0.3
2,588,253 + +0.9
2,588,254 - -1.0
2,588,254 - +0.7
2,588,254 - -0.3
2,588,254 - +0.6
2,588,254 - +0.4
2,588,259 + +0.1
2,588,260 - +0.1
2,588,402 + +0.6
2,588,577 + QEN71_RS11610 0.27 -0.8
2,588,577 + QEN71_RS11610 0.27 -1.4
2,588,577 + QEN71_RS11610 0.27 +0.5
2,588,577 + QEN71_RS11610 0.27 -0.1
2,588,577 + QEN71_RS11610 0.27 +0.0
2,588,577 + QEN71_RS11610 0.27 -0.6
2,588,577 + QEN71_RS11610 0.27 -0.6
2,588,578 - QEN71_RS11610 0.27 -1.3
2,588,578 - QEN71_RS11610 0.27 -1.3
2,588,578 - QEN71_RS11610 0.27 -1.0
2,588,578 - QEN71_RS11610 0.27 -0.8
2,588,578 - QEN71_RS11610 0.27 +0.7
2,588,578 - QEN71_RS11610 0.27 -0.7
2,588,578 - QEN71_RS11610 0.27 -0.4
2,588,578 - QEN71_RS11610 0.27 -0.0
2,588,578 - QEN71_RS11610 0.27 +0.0
2,588,578 - QEN71_RS11610 0.27 -1.4
2,588,578 - QEN71_RS11610 0.27 -1.3
2,588,578 - QEN71_RS11610 0.27 -0.8
2,588,730 + QEN71_RS11610 0.44 +0.9
2,588,731 - QEN71_RS11610 0.44 +0.5
2,588,826 + QEN71_RS11610 0.55 +0.3
2,588,826 + QEN71_RS11610 0.55 -0.6
2,588,826 + QEN71_RS11610 0.55 -0.2
2,588,827 - QEN71_RS11610 0.55 +0.1
2,588,827 - QEN71_RS11610 0.55 +1.2
2,588,829 + QEN71_RS11610 0.55 +0.3
2,588,829 + QEN71_RS11610 0.55 +1.5
2,588,857 - QEN71_RS11610 0.58 -1.4
2,589,029 + QEN71_RS11610 0.77 -0.1
2,589,042 + QEN71_RS11610 0.78 -0.4
2,589,043 - QEN71_RS11610 0.78 +0.6
2,589,043 - QEN71_RS11610 0.78 -0.6
2,589,214 + -0.1
2,589,235 + -0.4
2,589,235 + -0.1
2,589,235 + -0.3
2,589,236 - -0.9
2,589,395 + -0.4
2,589,537 - +0.4
2,589,628 - -0.1
2,589,630 + +0.8
2,589,630 + -0.7
2,589,630 + +0.9
2,589,631 - +0.7
2,589,631 - +0.4
2,589,631 - +1.1
2,589,631 - -0.4
2,589,634 + +1.0
2,589,634 + +0.6
2,589,634 + +0.0
2,589,634 + +0.2
2,589,634 + -0.4
2,589,635 - +0.1
2,589,635 - -1.3
2,589,635 - -0.8
2,590,003 - QEN71_RS11615 0.47 -2.0
2,590,003 - QEN71_RS11615 0.47 -2.2
2,590,095 + QEN71_RS11615 0.59 +0.5

Or see this region's nucleotide sequence