Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09045

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09035 and QEN71_RS09040 are separated by 124 nucleotidesQEN71_RS09040 and QEN71_RS09045 are separated by 307 nucleotidesQEN71_RS09045 and QEN71_RS09050 are separated by 29 nucleotides QEN71_RS09035: QEN71_RS09035 - superinfection immunity protein, at 2,023,852 to 2,024,160 _RS09035 QEN71_RS09040: QEN71_RS09040 - NUDIX domain-containing protein, at 2,024,285 to 2,024,758 _RS09040 QEN71_RS09045: QEN71_RS09045 - S1/P1 Nuclease, at 2,025,066 to 2,027,372 _RS09045 QEN71_RS09050: QEN71_RS09050 - type II toxin-antitoxin system HipA family toxin, at 2,027,402 to 2,028,733 _RS09050 Position (kb) 2025 2026 2027 2028Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2024.150 kb on + strandat 2024.425 kb on + strand, within QEN71_RS09040at 2024.425 kb on + strand, within QEN71_RS09040at 2024.425 kb on + strand, within QEN71_RS09040at 2024.461 kb on + strand, within QEN71_RS09040at 2024.583 kb on + strand, within QEN71_RS09040at 2024.583 kb on + strand, within QEN71_RS09040at 2024.584 kb on - strand, within QEN71_RS09040at 2024.774 kb on + strandat 2024.775 kb on - strandat 2024.839 kb on + strandat 2024.839 kb on + strandat 2024.839 kb on + strandat 2024.840 kb on - strandat 2024.840 kb on - strandat 2024.847 kb on + strandat 2024.848 kb on - strandat 2024.848 kb on - strandat 2025.138 kb on + strandat 2025.138 kb on + strandat 2025.138 kb on + strandat 2025.139 kb on - strandat 2025.139 kb on - strandat 2025.139 kb on - strandat 2025.192 kb on + strandat 2025.192 kb on + strandat 2025.309 kb on + strand, within QEN71_RS09045at 2025.412 kb on - strand, within QEN71_RS09045at 2025.412 kb on - strand, within QEN71_RS09045at 2025.413 kb on + strand, within QEN71_RS09045at 2025.413 kb on + strand, within QEN71_RS09045at 2025.414 kb on - strand, within QEN71_RS09045at 2025.510 kb on + strand, within QEN71_RS09045at 2025.510 kb on + strand, within QEN71_RS09045at 2025.510 kb on + strand, within QEN71_RS09045at 2025.510 kb on + strand, within QEN71_RS09045at 2025.511 kb on - strand, within QEN71_RS09045at 2025.511 kb on - strand, within QEN71_RS09045at 2025.596 kb on + strand, within QEN71_RS09045at 2025.596 kb on + strand, within QEN71_RS09045at 2025.604 kb on - strand, within QEN71_RS09045at 2025.759 kb on + strand, within QEN71_RS09045at 2025.759 kb on + strand, within QEN71_RS09045at 2025.903 kb on - strand, within QEN71_RS09045at 2025.944 kb on + strand, within QEN71_RS09045at 2025.988 kb on - strand, within QEN71_RS09045at 2025.989 kb on + strand, within QEN71_RS09045at 2025.990 kb on - strand, within QEN71_RS09045at 2025.990 kb on - strand, within QEN71_RS09045at 2025.990 kb on - strand, within QEN71_RS09045at 2026.124 kb on + strand, within QEN71_RS09045at 2026.124 kb on + strand, within QEN71_RS09045at 2026.142 kb on + strand, within QEN71_RS09045at 2026.143 kb on - strand, within QEN71_RS09045at 2026.230 kb on + strand, within QEN71_RS09045at 2026.230 kb on + strand, within QEN71_RS09045at 2026.231 kb on - strand, within QEN71_RS09045at 2026.231 kb on - strand, within QEN71_RS09045at 2026.231 kb on - strand, within QEN71_RS09045at 2026.231 kb on - strand, within QEN71_RS09045at 2026.314 kb on + strand, within QEN71_RS09045at 2026.335 kb on + strand, within QEN71_RS09045at 2026.335 kb on + strand, within QEN71_RS09045at 2026.336 kb on - strand, within QEN71_RS09045at 2026.336 kb on - strand, within QEN71_RS09045at 2026.548 kb on + strand, within QEN71_RS09045at 2026.824 kb on + strand, within QEN71_RS09045at 2026.825 kb on - strand, within QEN71_RS09045at 2026.859 kb on + strand, within QEN71_RS09045at 2026.860 kb on + strand, within QEN71_RS09045at 2026.860 kb on + strand, within QEN71_RS09045at 2026.861 kb on - strand, within QEN71_RS09045at 2026.861 kb on - strand, within QEN71_RS09045at 2026.875 kb on + strand, within QEN71_RS09045at 2026.935 kb on + strand, within QEN71_RS09045at 2026.936 kb on - strand, within QEN71_RS09045at 2026.936 kb on - strand, within QEN71_RS09045at 2027.115 kb on + strand, within QEN71_RS09045at 2027.115 kb on + strand, within QEN71_RS09045at 2027.116 kb on - strand, within QEN71_RS09045at 2027.241 kb on + strandat 2027.310 kb on + strandat 2027.311 kb on - strandat 2027.384 kb on + strandat 2027.395 kb on + strandat 2027.403 kb on + strandat 2027.622 kb on + strand, within QEN71_RS09050at 2027.725 kb on - strand, within QEN71_RS09050at 2027.916 kb on + strand, within QEN71_RS09050at 2028.143 kb on - strand, within QEN71_RS09050

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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2,024,150 + +0.8
2,024,425 + QEN71_RS09040 0.30 -0.1
2,024,425 + QEN71_RS09040 0.30 -1.4
2,024,425 + QEN71_RS09040 0.30 +0.3
2,024,461 + QEN71_RS09040 0.37 -0.4
2,024,583 + QEN71_RS09040 0.63 -0.7
2,024,583 + QEN71_RS09040 0.63 -0.1
2,024,584 - QEN71_RS09040 0.63 -0.6
2,024,774 + +0.9
2,024,775 - -0.3
2,024,839 + -0.1
2,024,839 + +0.6
2,024,839 + +0.7
2,024,840 - +0.5
2,024,840 - +1.3
2,024,847 + +0.9
2,024,848 - -0.8
2,024,848 - +0.4
2,025,138 + -0.3
2,025,138 + +1.1
2,025,138 + -0.7
2,025,139 - +0.5
2,025,139 - +0.6
2,025,139 - +0.1
2,025,192 + +0.4
2,025,192 + +0.4
2,025,309 + QEN71_RS09045 0.11 +0.7
2,025,412 - QEN71_RS09045 0.15 +0.3
2,025,412 - QEN71_RS09045 0.15 -1.0
2,025,413 + QEN71_RS09045 0.15 +0.0
2,025,413 + QEN71_RS09045 0.15 -0.3
2,025,414 - QEN71_RS09045 0.15 -0.4
2,025,510 + QEN71_RS09045 0.19 +1.2
2,025,510 + QEN71_RS09045 0.19 -0.1
2,025,510 + QEN71_RS09045 0.19 -1.0
2,025,510 + QEN71_RS09045 0.19 +0.5
2,025,511 - QEN71_RS09045 0.19 +0.3
2,025,511 - QEN71_RS09045 0.19 -1.1
2,025,596 + QEN71_RS09045 0.23 -1.1
2,025,596 + QEN71_RS09045 0.23 -1.2
2,025,604 - QEN71_RS09045 0.23 -0.2
2,025,759 + QEN71_RS09045 0.30 -1.1
2,025,759 + QEN71_RS09045 0.30 -0.8
2,025,903 - QEN71_RS09045 0.36 +0.3
2,025,944 + QEN71_RS09045 0.38 +0.7
2,025,988 - QEN71_RS09045 0.40 -0.5
2,025,989 + QEN71_RS09045 0.40 -0.1
2,025,990 - QEN71_RS09045 0.40 +0.1
2,025,990 - QEN71_RS09045 0.40 -0.4
2,025,990 - QEN71_RS09045 0.40 -1.0
2,026,124 + QEN71_RS09045 0.46 -0.1
2,026,124 + QEN71_RS09045 0.46 -1.7
2,026,142 + QEN71_RS09045 0.47 -0.2
2,026,143 - QEN71_RS09045 0.47 -1.1
2,026,230 + QEN71_RS09045 0.50 -0.4
2,026,230 + QEN71_RS09045 0.50 -0.2
2,026,231 - QEN71_RS09045 0.50 -0.0
2,026,231 - QEN71_RS09045 0.50 +2.7
2,026,231 - QEN71_RS09045 0.50 -1.3
2,026,231 - QEN71_RS09045 0.50 -0.1
2,026,314 + QEN71_RS09045 0.54 +0.1
2,026,335 + QEN71_RS09045 0.55 +0.7
2,026,335 + QEN71_RS09045 0.55 -0.3
2,026,336 - QEN71_RS09045 0.55 -0.7
2,026,336 - QEN71_RS09045 0.55 -0.2
2,026,548 + QEN71_RS09045 0.64 +0.7
2,026,824 + QEN71_RS09045 0.76 -0.7
2,026,825 - QEN71_RS09045 0.76 +0.3
2,026,859 + QEN71_RS09045 0.78 -0.2
2,026,860 + QEN71_RS09045 0.78 -0.4
2,026,860 + QEN71_RS09045 0.78 -0.6
2,026,861 - QEN71_RS09045 0.78 +0.1
2,026,861 - QEN71_RS09045 0.78 -0.6
2,026,875 + QEN71_RS09045 0.78 -0.4
2,026,935 + QEN71_RS09045 0.81 -0.1
2,026,936 - QEN71_RS09045 0.81 +0.3
2,026,936 - QEN71_RS09045 0.81 -0.7
2,027,115 + QEN71_RS09045 0.89 -1.6
2,027,115 + QEN71_RS09045 0.89 -3.6
2,027,116 - QEN71_RS09045 0.89 -0.7
2,027,241 + +0.3
2,027,310 + -0.0
2,027,311 - +0.0
2,027,384 + +1.9
2,027,395 + +0.9
2,027,403 + -0.0
2,027,622 + QEN71_RS09050 0.17 -0.4
2,027,725 - QEN71_RS09050 0.24 -0.0
2,027,916 + QEN71_RS09050 0.39 +0.3
2,028,143 - QEN71_RS09050 0.56 +0.8

Or see this region's nucleotide sequence