Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS09035 and QEN71_RS09040 are separated by 124 nucleotides QEN71_RS09040 and QEN71_RS09045 are separated by 307 nucleotides QEN71_RS09045 and QEN71_RS09050 are separated by 29 nucleotides
QEN71_RS09035: QEN71_RS09035 - superinfection immunity protein, at 2,023,852 to 2,024,160
_RS09035
QEN71_RS09040: QEN71_RS09040 - NUDIX domain-containing protein, at 2,024,285 to 2,024,758
_RS09040
QEN71_RS09045: QEN71_RS09045 - S1/P1 Nuclease, at 2,025,066 to 2,027,372
_RS09045
QEN71_RS09050: QEN71_RS09050 - type II toxin-antitoxin system HipA family toxin, at 2,027,402 to 2,028,733
_RS09050
Position (kb)
2025
2026
2027
2028 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2024.150 kb on + strand at 2024.425 kb on + strand, within QEN71_RS09040 at 2024.425 kb on + strand, within QEN71_RS09040 at 2024.425 kb on + strand, within QEN71_RS09040 at 2024.461 kb on + strand, within QEN71_RS09040 at 2024.583 kb on + strand, within QEN71_RS09040 at 2024.583 kb on + strand, within QEN71_RS09040 at 2024.584 kb on - strand, within QEN71_RS09040 at 2024.774 kb on + strand at 2024.775 kb on - strand at 2024.839 kb on + strand at 2024.839 kb on + strand at 2024.839 kb on + strand at 2024.840 kb on - strand at 2024.840 kb on - strand at 2024.847 kb on + strand at 2024.848 kb on - strand at 2024.848 kb on - strand at 2025.138 kb on + strand at 2025.138 kb on + strand at 2025.138 kb on + strand at 2025.139 kb on - strand at 2025.139 kb on - strand at 2025.139 kb on - strand at 2025.192 kb on + strand at 2025.192 kb on + strand at 2025.309 kb on + strand, within QEN71_RS09045 at 2025.412 kb on - strand, within QEN71_RS09045 at 2025.412 kb on - strand, within QEN71_RS09045 at 2025.413 kb on + strand, within QEN71_RS09045 at 2025.413 kb on + strand, within QEN71_RS09045 at 2025.414 kb on - strand, within QEN71_RS09045 at 2025.510 kb on + strand, within QEN71_RS09045 at 2025.510 kb on + strand, within QEN71_RS09045 at 2025.510 kb on + strand, within QEN71_RS09045 at 2025.510 kb on + strand, within QEN71_RS09045 at 2025.511 kb on - strand, within QEN71_RS09045 at 2025.511 kb on - strand, within QEN71_RS09045 at 2025.596 kb on + strand, within QEN71_RS09045 at 2025.596 kb on + strand, within QEN71_RS09045 at 2025.604 kb on - strand, within QEN71_RS09045 at 2025.759 kb on + strand, within QEN71_RS09045 at 2025.759 kb on + strand, within QEN71_RS09045 at 2025.903 kb on - strand, within QEN71_RS09045 at 2025.944 kb on + strand, within QEN71_RS09045 at 2025.988 kb on - strand, within QEN71_RS09045 at 2025.989 kb on + strand, within QEN71_RS09045 at 2025.990 kb on - strand, within QEN71_RS09045 at 2025.990 kb on - strand, within QEN71_RS09045 at 2025.990 kb on - strand, within QEN71_RS09045 at 2026.124 kb on + strand, within QEN71_RS09045 at 2026.124 kb on + strand, within QEN71_RS09045 at 2026.142 kb on + strand, within QEN71_RS09045 at 2026.143 kb on - strand, within QEN71_RS09045 at 2026.230 kb on + strand, within QEN71_RS09045 at 2026.230 kb on + strand, within QEN71_RS09045 at 2026.231 kb on - strand, within QEN71_RS09045 at 2026.231 kb on - strand, within QEN71_RS09045 at 2026.231 kb on - strand, within QEN71_RS09045 at 2026.231 kb on - strand, within QEN71_RS09045 at 2026.314 kb on + strand, within QEN71_RS09045 at 2026.335 kb on + strand, within QEN71_RS09045 at 2026.335 kb on + strand, within QEN71_RS09045 at 2026.336 kb on - strand, within QEN71_RS09045 at 2026.336 kb on - strand, within QEN71_RS09045 at 2026.548 kb on + strand, within QEN71_RS09045 at 2026.824 kb on + strand, within QEN71_RS09045 at 2026.825 kb on - strand, within QEN71_RS09045 at 2026.859 kb on + strand, within QEN71_RS09045 at 2026.860 kb on + strand, within QEN71_RS09045 at 2026.860 kb on + strand, within QEN71_RS09045 at 2026.861 kb on - strand, within QEN71_RS09045 at 2026.861 kb on - strand, within QEN71_RS09045 at 2026.875 kb on + strand, within QEN71_RS09045 at 2026.935 kb on + strand, within QEN71_RS09045 at 2026.936 kb on - strand, within QEN71_RS09045 at 2026.936 kb on - strand, within QEN71_RS09045 at 2027.115 kb on + strand, within QEN71_RS09045 at 2027.115 kb on + strand, within QEN71_RS09045 at 2027.116 kb on - strand, within QEN71_RS09045 at 2027.241 kb on + strand at 2027.310 kb on + strand at 2027.311 kb on - strand at 2027.384 kb on + strand at 2027.395 kb on + strand at 2027.403 kb on + strand at 2027.622 kb on + strand, within QEN71_RS09050 at 2027.725 kb on - strand, within QEN71_RS09050 at 2027.916 kb on + strand, within QEN71_RS09050 at 2028.143 kb on - strand, within QEN71_RS09050
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 2,024,150 + +0.8 2,024,425 + QEN71_RS09040 0.30 -0.1 2,024,425 + QEN71_RS09040 0.30 -1.4 2,024,425 + QEN71_RS09040 0.30 +0.3 2,024,461 + QEN71_RS09040 0.37 -0.4 2,024,583 + QEN71_RS09040 0.63 -0.7 2,024,583 + QEN71_RS09040 0.63 -0.1 2,024,584 - QEN71_RS09040 0.63 -0.6 2,024,774 + +0.9 2,024,775 - -0.3 2,024,839 + -0.1 2,024,839 + +0.6 2,024,839 + +0.7 2,024,840 - +0.5 2,024,840 - +1.3 2,024,847 + +0.9 2,024,848 - -0.8 2,024,848 - +0.4 2,025,138 + -0.3 2,025,138 + +1.1 2,025,138 + -0.7 2,025,139 - +0.5 2,025,139 - +0.6 2,025,139 - +0.1 2,025,192 + +0.4 2,025,192 + +0.4 2,025,309 + QEN71_RS09045 0.11 +0.7 2,025,412 - QEN71_RS09045 0.15 +0.3 2,025,412 - QEN71_RS09045 0.15 -1.0 2,025,413 + QEN71_RS09045 0.15 +0.0 2,025,413 + QEN71_RS09045 0.15 -0.3 2,025,414 - QEN71_RS09045 0.15 -0.4 2,025,510 + QEN71_RS09045 0.19 +1.2 2,025,510 + QEN71_RS09045 0.19 -0.1 2,025,510 + QEN71_RS09045 0.19 -1.0 2,025,510 + QEN71_RS09045 0.19 +0.5 2,025,511 - QEN71_RS09045 0.19 +0.3 2,025,511 - QEN71_RS09045 0.19 -1.1 2,025,596 + QEN71_RS09045 0.23 -1.1 2,025,596 + QEN71_RS09045 0.23 -1.2 2,025,604 - QEN71_RS09045 0.23 -0.2 2,025,759 + QEN71_RS09045 0.30 -1.1 2,025,759 + QEN71_RS09045 0.30 -0.8 2,025,903 - QEN71_RS09045 0.36 +0.3 2,025,944 + QEN71_RS09045 0.38 +0.7 2,025,988 - QEN71_RS09045 0.40 -0.5 2,025,989 + QEN71_RS09045 0.40 -0.1 2,025,990 - QEN71_RS09045 0.40 +0.1 2,025,990 - QEN71_RS09045 0.40 -0.4 2,025,990 - QEN71_RS09045 0.40 -1.0 2,026,124 + QEN71_RS09045 0.46 -0.1 2,026,124 + QEN71_RS09045 0.46 -1.7 2,026,142 + QEN71_RS09045 0.47 -0.2 2,026,143 - QEN71_RS09045 0.47 -1.1 2,026,230 + QEN71_RS09045 0.50 -0.4 2,026,230 + QEN71_RS09045 0.50 -0.2 2,026,231 - QEN71_RS09045 0.50 -0.0 2,026,231 - QEN71_RS09045 0.50 +2.7 2,026,231 - QEN71_RS09045 0.50 -1.3 2,026,231 - QEN71_RS09045 0.50 -0.1 2,026,314 + QEN71_RS09045 0.54 +0.1 2,026,335 + QEN71_RS09045 0.55 +0.7 2,026,335 + QEN71_RS09045 0.55 -0.3 2,026,336 - QEN71_RS09045 0.55 -0.7 2,026,336 - QEN71_RS09045 0.55 -0.2 2,026,548 + QEN71_RS09045 0.64 +0.7 2,026,824 + QEN71_RS09045 0.76 -0.7 2,026,825 - QEN71_RS09045 0.76 +0.3 2,026,859 + QEN71_RS09045 0.78 -0.2 2,026,860 + QEN71_RS09045 0.78 -0.4 2,026,860 + QEN71_RS09045 0.78 -0.6 2,026,861 - QEN71_RS09045 0.78 +0.1 2,026,861 - QEN71_RS09045 0.78 -0.6 2,026,875 + QEN71_RS09045 0.78 -0.4 2,026,935 + QEN71_RS09045 0.81 -0.1 2,026,936 - QEN71_RS09045 0.81 +0.3 2,026,936 - QEN71_RS09045 0.81 -0.7 2,027,115 + QEN71_RS09045 0.89 -1.6 2,027,115 + QEN71_RS09045 0.89 -3.6 2,027,116 - QEN71_RS09045 0.89 -0.7 2,027,241 + +0.3 2,027,310 + -0.0 2,027,311 - +0.0 2,027,384 + +1.9 2,027,395 + +0.9 2,027,403 + -0.0 2,027,622 + QEN71_RS09050 0.17 -0.4 2,027,725 - QEN71_RS09050 0.24 -0.0 2,027,916 + QEN71_RS09050 0.39 +0.3 2,028,143 - QEN71_RS09050 0.56 +0.8
Or see this region's nucleotide sequence