Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06400

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06395 and QEN71_RS06400 overlap by 4 nucleotidesQEN71_RS06400 and QEN71_RS06405 are separated by 64 nucleotides QEN71_RS06395: QEN71_RS06395 - NAD-dependent DNA ligase LigA, at 1,418,605 to 1,420,656 _RS06395 QEN71_RS06400: QEN71_RS06400 - peptide deformylase, at 1,420,653 to 1,421,186 _RS06400 QEN71_RS06405: QEN71_RS06405 - pseudouridine synthase, at 1,421,251 to 1,423,449 _RS06405 Position (kb) 1420 1421 1422Strain fitness (log2 ratio) -1 0 1at 1420.629 kb on + strandat 1420.629 kb on + strandat 1420.630 kb on - strandat 1420.848 kb on - strand, within QEN71_RS06400at 1421.001 kb on + strand, within QEN71_RS06400at 1421.103 kb on + strand, within QEN71_RS06400at 1421.104 kb on - strand, within QEN71_RS06400at 1421.114 kb on + strand, within QEN71_RS06400at 1421.115 kb on - strand, within QEN71_RS06400at 1421.115 kb on - strand, within QEN71_RS06400at 1421.115 kb on - strand, within QEN71_RS06400at 1421.141 kb on + strandat 1421.142 kb on - strandat 1421.252 kb on + strandat 1421.252 kb on + strandat 1421.252 kb on + strandat 1421.253 kb on - strandat 1421.276 kb on + strandat 1421.277 kb on - strandat 1421.277 kb on - strandat 1421.543 kb on + strand, within QEN71_RS06405at 1421.544 kb on - strand, within QEN71_RS06405at 1421.561 kb on + strand, within QEN71_RS06405at 1421.561 kb on + strand, within QEN71_RS06405at 1421.561 kb on + strand, within QEN71_RS06405at 1421.562 kb on - strand, within QEN71_RS06405at 1421.562 kb on - strand, within QEN71_RS06405at 1421.562 kb on - strand, within QEN71_RS06405at 1421.562 kb on - strand, within QEN71_RS06405at 1421.686 kb on + strand, within QEN71_RS06405at 1421.687 kb on - strand, within QEN71_RS06405at 1421.687 kb on - strand, within QEN71_RS06405at 1421.687 kb on - strand, within QEN71_RS06405at 1421.763 kb on - strand, within QEN71_RS06405at 1421.789 kb on + strand, within QEN71_RS06405at 1421.789 kb on + strand, within QEN71_RS06405at 1421.789 kb on + strand, within QEN71_RS06405at 1421.790 kb on - strand, within QEN71_RS06405at 1421.790 kb on - strand, within QEN71_RS06405at 1421.802 kb on + strand, within QEN71_RS06405at 1421.803 kb on - strand, within QEN71_RS06405at 1421.803 kb on - strand, within QEN71_RS06405at 1421.803 kb on - strand, within QEN71_RS06405at 1421.803 kb on - strand, within QEN71_RS06405at 1421.803 kb on - strand, within QEN71_RS06405at 1421.895 kb on + strand, within QEN71_RS06405at 1421.896 kb on - strand, within QEN71_RS06405

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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1,420,629 + -0.9
1,420,629 + +0.3
1,420,630 - -0.2
1,420,848 - QEN71_RS06400 0.37 +0.5
1,421,001 + QEN71_RS06400 0.65 +0.3
1,421,103 + QEN71_RS06400 0.84 +0.6
1,421,104 - QEN71_RS06400 0.84 -0.3
1,421,114 + QEN71_RS06400 0.86 +0.1
1,421,115 - QEN71_RS06400 0.87 -0.1
1,421,115 - QEN71_RS06400 0.87 +0.4
1,421,115 - QEN71_RS06400 0.87 +0.7
1,421,141 + +0.5
1,421,142 - -1.4
1,421,252 + -0.3
1,421,252 + +0.6
1,421,252 + -1.4
1,421,253 - -0.2
1,421,276 + -0.8
1,421,277 - -0.6
1,421,277 - -0.0
1,421,543 + QEN71_RS06405 0.13 -0.4
1,421,544 - QEN71_RS06405 0.13 +0.0
1,421,561 + QEN71_RS06405 0.14 -0.0
1,421,561 + QEN71_RS06405 0.14 -0.7
1,421,561 + QEN71_RS06405 0.14 -0.2
1,421,562 - QEN71_RS06405 0.14 -0.1
1,421,562 - QEN71_RS06405 0.14 -0.6
1,421,562 - QEN71_RS06405 0.14 +0.5
1,421,562 - QEN71_RS06405 0.14 -0.3
1,421,686 + QEN71_RS06405 0.20 -0.0
1,421,687 - QEN71_RS06405 0.20 +0.8
1,421,687 - QEN71_RS06405 0.20 -0.3
1,421,687 - QEN71_RS06405 0.20 -1.5
1,421,763 - QEN71_RS06405 0.23 -0.6
1,421,789 + QEN71_RS06405 0.24 -1.1
1,421,789 + QEN71_RS06405 0.24 +0.3
1,421,789 + QEN71_RS06405 0.24 +0.2
1,421,790 - QEN71_RS06405 0.25 -0.2
1,421,790 - QEN71_RS06405 0.25 -0.1
1,421,802 + QEN71_RS06405 0.25 -0.7
1,421,803 - QEN71_RS06405 0.25 +0.7
1,421,803 - QEN71_RS06405 0.25 -0.9
1,421,803 - QEN71_RS06405 0.25 +0.2
1,421,803 - QEN71_RS06405 0.25 -0.1
1,421,803 - QEN71_RS06405 0.25 -0.3
1,421,895 + QEN71_RS06405 0.29 +0.2
1,421,896 - QEN71_RS06405 0.29 -1.3

Or see this region's nucleotide sequence