Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04730

Experiment: Motility_inner_sample

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS04725 and QEN71_RS04730 are separated by 234 nucleotidesQEN71_RS04730 and QEN71_RS04735 are separated by 79 nucleotidesQEN71_RS04735 and QEN71_RS04740 are separated by 160 nucleotidesQEN71_RS04740 and QEN71_RS04745 are separated by 48 nucleotides QEN71_RS04725: QEN71_RS04725 - glycosyltransferase family 4 protein, at 1,032,300 to 1,033,364 _RS04725 QEN71_RS04730: QEN71_RS04730 - hypothetical protein, at 1,033,599 to 1,034,447 _RS04730 QEN71_RS04735: QEN71_RS04735 - DUF2214 family protein, at 1,034,527 to 1,034,985 _RS04735 QEN71_RS04740: QEN71_RS04740 - tRNA-Val, at 1,035,146 to 1,035,220 _RS04740 QEN71_RS04745: QEN71_RS04745 - DNA polymerase III subunit epsilon, at 1,035,269 to 1,036,018 _RS04745 Position (kb) 1033 1034 1035Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1032.706 kb on + strand, within QEN71_RS04725at 1032.707 kb on - strand, within QEN71_RS04725at 1032.765 kb on + strand, within QEN71_RS04725at 1032.765 kb on + strand, within QEN71_RS04725at 1032.766 kb on - strand, within QEN71_RS04725at 1032.766 kb on - strand, within QEN71_RS04725at 1032.766 kb on - strand, within QEN71_RS04725at 1032.819 kb on + strand, within QEN71_RS04725at 1032.819 kb on + strand, within QEN71_RS04725at 1032.819 kb on + strand, within QEN71_RS04725at 1032.939 kb on + strand, within QEN71_RS04725at 1032.939 kb on + strand, within QEN71_RS04725at 1032.939 kb on + strand, within QEN71_RS04725at 1032.940 kb on - strand, within QEN71_RS04725at 1032.942 kb on + strand, within QEN71_RS04725at 1032.942 kb on + strand, within QEN71_RS04725at 1032.942 kb on + strand, within QEN71_RS04725at 1032.942 kb on + strand, within QEN71_RS04725at 1032.942 kb on + strand, within QEN71_RS04725at 1032.942 kb on + strand, within QEN71_RS04725at 1032.942 kb on + strand, within QEN71_RS04725at 1032.942 kb on + strand, within QEN71_RS04725at 1032.942 kb on + strand, within QEN71_RS04725at 1032.942 kb on + strand, within QEN71_RS04725at 1032.943 kb on - strand, within QEN71_RS04725at 1032.943 kb on - strand, within QEN71_RS04725at 1032.943 kb on - strand, within QEN71_RS04725at 1032.943 kb on - strand, within QEN71_RS04725at 1032.943 kb on - strand, within QEN71_RS04725at 1032.987 kb on + strand, within QEN71_RS04725at 1032.987 kb on + strand, within QEN71_RS04725at 1032.987 kb on + strand, within QEN71_RS04725at 1032.987 kb on + strand, within QEN71_RS04725at 1032.987 kb on + strand, within QEN71_RS04725at 1032.987 kb on + strand, within QEN71_RS04725at 1032.987 kb on + strand, within QEN71_RS04725at 1032.987 kb on + strand, within QEN71_RS04725at 1032.987 kb on + strand, within QEN71_RS04725at 1032.988 kb on - strand, within QEN71_RS04725at 1032.988 kb on - strand, within QEN71_RS04725at 1032.988 kb on - strand, within QEN71_RS04725at 1032.988 kb on - strand, within QEN71_RS04725at 1032.988 kb on - strand, within QEN71_RS04725at 1032.988 kb on - strand, within QEN71_RS04725at 1032.988 kb on - strand, within QEN71_RS04725at 1032.988 kb on - strand, within QEN71_RS04725at 1032.988 kb on - strand, within QEN71_RS04725at 1032.988 kb on - strand, within QEN71_RS04725at 1033.293 kb on + strandat 1033.293 kb on + strandat 1033.293 kb on + strandat 1033.293 kb on + strandat 1033.293 kb on + strandat 1033.294 kb on - strandat 1033.294 kb on - strandat 1033.294 kb on - strandat 1033.294 kb on - strandat 1033.305 kb on + strandat 1033.305 kb on + strandat 1033.305 kb on + strandat 1033.306 kb on - strandat 1033.306 kb on - strandat 1033.306 kb on - strandat 1033.401 kb on + strandat 1033.402 kb on - strandat 1033.402 kb on - strandat 1033.402 kb on - strandat 1033.537 kb on + strandat 1033.538 kb on - strandat 1033.538 kb on - strandat 1033.540 kb on + strandat 1033.540 kb on + strandat 1033.541 kb on - strandat 1033.541 kb on - strandat 1033.541 kb on - strandat 1033.541 kb on - strandat 1033.541 kb on - strandat 1033.541 kb on - strandat 1033.541 kb on - strandat 1033.541 kb on - strandat 1033.546 kb on + strandat 1033.546 kb on + strandat 1033.546 kb on + strandat 1033.546 kb on + strandat 1033.546 kb on + strandat 1033.546 kb on + strandat 1033.546 kb on + strandat 1033.546 kb on + strandat 1033.546 kb on + strandat 1033.546 kb on + strandat 1033.546 kb on + strandat 1033.546 kb on + strandat 1033.547 kb on - strandat 1033.547 kb on - strandat 1033.547 kb on - strandat 1033.547 kb on - strandat 1033.547 kb on - strandat 1033.547 kb on - strandat 1033.547 kb on - strandat 1033.548 kb on + strandat 1033.548 kb on + strandat 1033.548 kb on + strandat 1033.548 kb on + strandat 1033.549 kb on - strandat 1033.549 kb on - strandat 1033.549 kb on - strandat 1033.549 kb on - strandat 1033.549 kb on - strandat 1033.549 kb on - strandat 1033.549 kb on - strandat 1033.584 kb on + strandat 1033.584 kb on + strandat 1033.584 kb on + strandat 1033.584 kb on + strandat 1033.585 kb on - strandat 1033.696 kb on + strand, within QEN71_RS04730at 1033.697 kb on - strand, within QEN71_RS04730at 1033.697 kb on - strand, within QEN71_RS04730at 1033.725 kb on - strand, within QEN71_RS04730at 1033.725 kb on - strand, within QEN71_RS04730at 1033.765 kb on + strand, within QEN71_RS04730at 1033.765 kb on + strand, within QEN71_RS04730at 1033.765 kb on + strand, within QEN71_RS04730at 1033.765 kb on + strand, within QEN71_RS04730at 1033.765 kb on + strand, within QEN71_RS04730at 1033.765 kb on + strand, within QEN71_RS04730at 1033.765 kb on + strand, within QEN71_RS04730at 1033.765 kb on + strand, within QEN71_RS04730at 1033.765 kb on + strand, within QEN71_RS04730at 1033.765 kb on + strand, within QEN71_RS04730at 1033.766 kb on - strand, within QEN71_RS04730at 1033.766 kb on - strand, within QEN71_RS04730at 1033.766 kb on - strand, within QEN71_RS04730at 1033.766 kb on - strand, within QEN71_RS04730at 1033.766 kb on - strand, within QEN71_RS04730at 1033.766 kb on - strand, within QEN71_RS04730at 1033.766 kb on - strand, within QEN71_RS04730at 1033.766 kb on - strand, within QEN71_RS04730at 1033.766 kb on - strand, within QEN71_RS04730at 1033.998 kb on + strand, within QEN71_RS04730at 1033.998 kb on + strand, within QEN71_RS04730at 1033.998 kb on + strand, within QEN71_RS04730at 1033.999 kb on - strand, within QEN71_RS04730at 1033.999 kb on - strand, within QEN71_RS04730at 1033.999 kb on - strand, within QEN71_RS04730at 1033.999 kb on - strand, within QEN71_RS04730at 1034.011 kb on + strand, within QEN71_RS04730at 1034.011 kb on + strand, within QEN71_RS04730at 1034.011 kb on + strand, within QEN71_RS04730at 1034.011 kb on + strand, within QEN71_RS04730at 1034.011 kb on + strand, within QEN71_RS04730at 1034.012 kb on - strand, within QEN71_RS04730at 1034.048 kb on + strand, within QEN71_RS04730at 1034.148 kb on + strand, within QEN71_RS04730at 1034.148 kb on + strand, within QEN71_RS04730at 1034.148 kb on + strand, within QEN71_RS04730at 1034.149 kb on - strand, within QEN71_RS04730at 1034.149 kb on - strand, within QEN71_RS04730at 1034.357 kb on + strand, within QEN71_RS04730at 1034.743 kb on + strand, within QEN71_RS04735at 1034.743 kb on + strand, within QEN71_RS04735at 1034.743 kb on + strand, within QEN71_RS04735at 1034.743 kb on + strand, within QEN71_RS04735at 1034.744 kb on - strand, within QEN71_RS04735at 1034.744 kb on - strand, within QEN71_RS04735at 1034.744 kb on - strand, within QEN71_RS04735at 1034.744 kb on - strand, within QEN71_RS04735at 1034.744 kb on - strand, within QEN71_RS04735at 1034.744 kb on - strand, within QEN71_RS04735at 1034.746 kb on + strand, within QEN71_RS04735at 1034.746 kb on + strand, within QEN71_RS04735at 1034.746 kb on + strand, within QEN71_RS04735at 1034.746 kb on + strand, within QEN71_RS04735at 1034.746 kb on + strand, within QEN71_RS04735at 1034.747 kb on - strand, within QEN71_RS04735at 1034.747 kb on - strand, within QEN71_RS04735at 1034.747 kb on - strand, within QEN71_RS04735at 1034.747 kb on - strand, within QEN71_RS04735at 1034.747 kb on - strand, within QEN71_RS04735at 1034.747 kb on - strand, within QEN71_RS04735at 1034.747 kb on - strand, within QEN71_RS04735at 1034.747 kb on - strand, within QEN71_RS04735at 1034.871 kb on + strand, within QEN71_RS04735at 1034.886 kb on + strand, within QEN71_RS04735at 1034.886 kb on + strand, within QEN71_RS04735at 1034.886 kb on + strand, within QEN71_RS04735at 1034.886 kb on + strand, within QEN71_RS04735at 1034.886 kb on + strand, within QEN71_RS04735at 1034.886 kb on + strand, within QEN71_RS04735at 1034.887 kb on - strand, within QEN71_RS04735at 1035.016 kb on + strandat 1035.016 kb on + strandat 1035.016 kb on + strandat 1035.016 kb on + strandat 1035.016 kb on + strandat 1035.017 kb on - strandat 1035.017 kb on - strandat 1035.017 kb on - strandat 1035.017 kb on - strandat 1035.017 kb on - strandat 1035.017 kb on - strandat 1035.017 kb on - strandat 1035.017 kb on - strandat 1035.017 kb on - strandat 1035.017 kb on - strandat 1035.017 kb on - strandat 1035.017 kb on - strandat 1035.074 kb on + strandat 1035.074 kb on + strandat 1035.075 kb on - strandat 1035.263 kb on + strandat 1035.271 kb on - strandat 1035.271 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
remove
1,032,706 + QEN71_RS04725 0.38 -3.1
1,032,707 - QEN71_RS04725 0.38 -1.8
1,032,765 + QEN71_RS04725 0.44 -3.8
1,032,765 + QEN71_RS04725 0.44 -2.0
1,032,766 - QEN71_RS04725 0.44 -1.7
1,032,766 - QEN71_RS04725 0.44 -1.6
1,032,766 - QEN71_RS04725 0.44 -1.9
1,032,819 + QEN71_RS04725 0.49 -0.3
1,032,819 + QEN71_RS04725 0.49 -2.5
1,032,819 + QEN71_RS04725 0.49 -2.3
1,032,939 + QEN71_RS04725 0.60 -0.8
1,032,939 + QEN71_RS04725 0.60 -2.2
1,032,939 + QEN71_RS04725 0.60 -1.3
1,032,940 - QEN71_RS04725 0.60 -3.2
1,032,942 + QEN71_RS04725 0.60 -1.0
1,032,942 + QEN71_RS04725 0.60 -0.2
1,032,942 + QEN71_RS04725 0.60 -2.1
1,032,942 + QEN71_RS04725 0.60 -2.1
1,032,942 + QEN71_RS04725 0.60 -1.6
1,032,942 + QEN71_RS04725 0.60 -2.9
1,032,942 + QEN71_RS04725 0.60 -1.6
1,032,942 + QEN71_RS04725 0.60 -2.6
1,032,942 + QEN71_RS04725 0.60 -0.7
1,032,942 + QEN71_RS04725 0.60 -2.6
1,032,943 - QEN71_RS04725 0.60 -1.6
1,032,943 - QEN71_RS04725 0.60 -2.3
1,032,943 - QEN71_RS04725 0.60 -3.6
1,032,943 - QEN71_RS04725 0.60 -1.2
1,032,943 - QEN71_RS04725 0.60 -2.9
1,032,987 + QEN71_RS04725 0.65 -1.3
1,032,987 + QEN71_RS04725 0.65 -3.0
1,032,987 + QEN71_RS04725 0.65 -1.7
1,032,987 + QEN71_RS04725 0.65 -1.7
1,032,987 + QEN71_RS04725 0.65 -1.8
1,032,987 + QEN71_RS04725 0.65 -3.5
1,032,987 + QEN71_RS04725 0.65 -2.9
1,032,987 + QEN71_RS04725 0.65 -1.6
1,032,987 + QEN71_RS04725 0.65 +1.2
1,032,988 - QEN71_RS04725 0.65 -3.2
1,032,988 - QEN71_RS04725 0.65 -1.8
1,032,988 - QEN71_RS04725 0.65 -2.4
1,032,988 - QEN71_RS04725 0.65 -1.3
1,032,988 - QEN71_RS04725 0.65 -1.9
1,032,988 - QEN71_RS04725 0.65 -1.9
1,032,988 - QEN71_RS04725 0.65 -1.7
1,032,988 - QEN71_RS04725 0.65 -2.2
1,032,988 - QEN71_RS04725 0.65 -2.4
1,032,988 - QEN71_RS04725 0.65 -2.2
1,033,293 + -1.9
1,033,293 + -0.8
1,033,293 + -2.4
1,033,293 + -1.8
1,033,293 + -2.1
1,033,294 - -3.1
1,033,294 - -1.6
1,033,294 - -2.3
1,033,294 - -2.0
1,033,305 + -2.6
1,033,305 + -2.1
1,033,305 + -0.8
1,033,306 - -2.4
1,033,306 - -3.0
1,033,306 - -2.4
1,033,401 + -0.3
1,033,402 - -1.0
1,033,402 - -0.1
1,033,402 - -1.9
1,033,537 + +0.7
1,033,538 - -0.5
1,033,538 - -0.6
1,033,540 + -0.3
1,033,540 + +0.7
1,033,541 - -0.4
1,033,541 - -0.6
1,033,541 - +0.3
1,033,541 - +0.3
1,033,541 - -0.3
1,033,541 - +0.2
1,033,541 - -0.0
1,033,541 - +0.4
1,033,546 + -0.2
1,033,546 + -2.1
1,033,546 + -2.1
1,033,546 + -1.1
1,033,546 + -0.9
1,033,546 + -1.6
1,033,546 + -4.0
1,033,546 + -1.5
1,033,546 + -3.6
1,033,546 + -2.3
1,033,546 + -0.7
1,033,546 + -1.7
1,033,547 - -0.0
1,033,547 - -0.3
1,033,547 - -1.3
1,033,547 - -0.1
1,033,547 - +0.2
1,033,547 - -0.3
1,033,547 - -0.4
1,033,548 + -0.3
1,033,548 + -0.3
1,033,548 + -1.5
1,033,548 + -0.3
1,033,549 - -1.5
1,033,549 - -1.0
1,033,549 - -0.6
1,033,549 - -0.0
1,033,549 - +0.2
1,033,549 - -0.4
1,033,549 - +1.2
1,033,584 + -0.6
1,033,584 + -1.1
1,033,584 + +1.0
1,033,584 + -0.2
1,033,585 - -0.7
1,033,696 + QEN71_RS04730 0.11 +0.2
1,033,697 - QEN71_RS04730 0.12 +1.6
1,033,697 - QEN71_RS04730 0.12 +0.2
1,033,725 - QEN71_RS04730 0.15 +0.5
1,033,725 - QEN71_RS04730 0.15 -0.7
1,033,765 + QEN71_RS04730 0.20 -0.7
1,033,765 + QEN71_RS04730 0.20 -0.8
1,033,765 + QEN71_RS04730 0.20 -0.1
1,033,765 + QEN71_RS04730 0.20 -0.6
1,033,765 + QEN71_RS04730 0.20 -1.3
1,033,765 + QEN71_RS04730 0.20 -1.7
1,033,765 + QEN71_RS04730 0.20 +1.4
1,033,765 + QEN71_RS04730 0.20 +2.6
1,033,765 + QEN71_RS04730 0.20 +0.8
1,033,765 + QEN71_RS04730 0.20 -0.2
1,033,766 - QEN71_RS04730 0.20 -0.6
1,033,766 - QEN71_RS04730 0.20 -0.3
1,033,766 - QEN71_RS04730 0.20 -0.4
1,033,766 - QEN71_RS04730 0.20 +0.1
1,033,766 - QEN71_RS04730 0.20 +0.1
1,033,766 - QEN71_RS04730 0.20 -0.4
1,033,766 - QEN71_RS04730 0.20 +0.0
1,033,766 - QEN71_RS04730 0.20 -1.0
1,033,766 - QEN71_RS04730 0.20 +0.3
1,033,998 + QEN71_RS04730 0.47 -1.4
1,033,998 + QEN71_RS04730 0.47 -1.5
1,033,998 + QEN71_RS04730 0.47 -0.3
1,033,999 - QEN71_RS04730 0.47 -0.0
1,033,999 - QEN71_RS04730 0.47 -1.0
1,033,999 - QEN71_RS04730 0.47 +0.0
1,033,999 - QEN71_RS04730 0.47 -1.3
1,034,011 + QEN71_RS04730 0.49 -0.6
1,034,011 + QEN71_RS04730 0.49 +0.8
1,034,011 + QEN71_RS04730 0.49 -0.6
1,034,011 + QEN71_RS04730 0.49 +0.0
1,034,011 + QEN71_RS04730 0.49 +1.2
1,034,012 - QEN71_RS04730 0.49 +1.6
1,034,048 + QEN71_RS04730 0.53 -0.2
1,034,148 + QEN71_RS04730 0.65 +0.8
1,034,148 + QEN71_RS04730 0.65 -1.3
1,034,148 + QEN71_RS04730 0.65 -0.1
1,034,149 - QEN71_RS04730 0.65 +0.4
1,034,149 - QEN71_RS04730 0.65 -0.3
1,034,357 + QEN71_RS04730 0.89 +0.1
1,034,743 + QEN71_RS04735 0.47 +0.5
1,034,743 + QEN71_RS04735 0.47 +0.2
1,034,743 + QEN71_RS04735 0.47 -0.6
1,034,743 + QEN71_RS04735 0.47 +1.1
1,034,744 - QEN71_RS04735 0.47 +0.1
1,034,744 - QEN71_RS04735 0.47 +0.5
1,034,744 - QEN71_RS04735 0.47 +0.5
1,034,744 - QEN71_RS04735 0.47 -2.2
1,034,744 - QEN71_RS04735 0.47 -0.6
1,034,744 - QEN71_RS04735 0.47 -0.9
1,034,746 + QEN71_RS04735 0.48 +0.3
1,034,746 + QEN71_RS04735 0.48 -0.3
1,034,746 + QEN71_RS04735 0.48 +0.4
1,034,746 + QEN71_RS04735 0.48 -0.3
1,034,746 + QEN71_RS04735 0.48 +1.3
1,034,747 - QEN71_RS04735 0.48 -0.7
1,034,747 - QEN71_RS04735 0.48 -0.8
1,034,747 - QEN71_RS04735 0.48 +0.7
1,034,747 - QEN71_RS04735 0.48 +1.3
1,034,747 - QEN71_RS04735 0.48 -1.2
1,034,747 - QEN71_RS04735 0.48 +0.9
1,034,747 - QEN71_RS04735 0.48 +0.2
1,034,747 - QEN71_RS04735 0.48 +0.1
1,034,871 + QEN71_RS04735 0.75 -0.5
1,034,886 + QEN71_RS04735 0.78 +0.8
1,034,886 + QEN71_RS04735 0.78 -2.3
1,034,886 + QEN71_RS04735 0.78 +0.1
1,034,886 + QEN71_RS04735 0.78 +0.3
1,034,886 + QEN71_RS04735 0.78 +1.3
1,034,886 + QEN71_RS04735 0.78 -0.3
1,034,887 - QEN71_RS04735 0.78 -0.1
1,035,016 + +0.5
1,035,016 + -1.2
1,035,016 + -0.4
1,035,016 + -1.1
1,035,016 + +0.5
1,035,017 - -0.7
1,035,017 - +1.2
1,035,017 - -0.3
1,035,017 - +0.4
1,035,017 - -0.0
1,035,017 - -0.2
1,035,017 - -0.2
1,035,017 - +0.7
1,035,017 - +1.1
1,035,017 - +0.5
1,035,017 - +1.1
1,035,017 - -0.2
1,035,074 + +0.7
1,035,074 + -0.7
1,035,075 - -0.4
1,035,263 + -1.5
1,035,271 - +0.0
1,035,271 - +0.3

Or see this region's nucleotide sequence