Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03980 and QEN71_RS03985 are separated by 109 nucleotides QEN71_RS03985 and QEN71_RS03990 are separated by 87 nucleotides QEN71_RS03990 and QEN71_RS03995 are separated by 9 nucleotides
QEN71_RS03980: QEN71_RS03980 - cation diffusion facilitator family transporter, at 881,029 to 882,126
_RS03980
QEN71_RS03985: QEN71_RS03985 - FAD-dependent monooxygenase, at 882,236 to 883,972
_RS03985
QEN71_RS03990: QEN71_RS03990 - formate dehydrogenase subunit delta, at 884,060 to 884,314
_RS03990
QEN71_RS03995: QEN71_RS03995 - formate dehydrogenase subunit alpha, at 884,324 to 887,263
_RS03995
Position (kb) 882
883
884 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 881.318 kb on - strand, within QEN71_RS03980 at 881.318 kb on - strand, within QEN71_RS03980 at 881.318 kb on - strand, within QEN71_RS03980 at 881.440 kb on + strand, within QEN71_RS03980 at 881.440 kb on + strand, within QEN71_RS03980 at 881.441 kb on - strand, within QEN71_RS03980 at 881.466 kb on + strand, within QEN71_RS03980 at 881.467 kb on - strand, within QEN71_RS03980 at 881.679 kb on + strand, within QEN71_RS03980 at 881.679 kb on + strand, within QEN71_RS03980 at 881.679 kb on + strand, within QEN71_RS03980 at 881.679 kb on + strand, within QEN71_RS03980 at 881.680 kb on - strand, within QEN71_RS03980 at 881.680 kb on - strand, within QEN71_RS03980 at 881.797 kb on + strand, within QEN71_RS03980 at 881.884 kb on + strand, within QEN71_RS03980 at 882.124 kb on + strand at 882.124 kb on + strand at 882.124 kb on + strand at 882.124 kb on + strand at 882.124 kb on + strand at 882.125 kb on - strand at 882.125 kb on - strand at 882.125 kb on - strand at 882.125 kb on - strand at 882.201 kb on + strand at 882.201 kb on + strand at 882.201 kb on + strand at 882.202 kb on - strand at 882.202 kb on - strand at 882.202 kb on - strand at 882.202 kb on - strand at 882.202 kb on - strand at 882.202 kb on - strand at 882.202 kb on - strand at 882.206 kb on + strand at 882.206 kb on + strand at 882.206 kb on + strand at 882.206 kb on + strand at 882.207 kb on - strand at 882.207 kb on - strand at 882.207 kb on - strand at 882.258 kb on + strand at 882.258 kb on + strand at 882.259 kb on - strand at 882.479 kb on + strand, within QEN71_RS03985 at 882.480 kb on - strand, within QEN71_RS03985 at 882.480 kb on - strand, within QEN71_RS03985 at 882.539 kb on + strand, within QEN71_RS03985 at 882.539 kb on + strand, within QEN71_RS03985 at 882.539 kb on + strand, within QEN71_RS03985 at 882.540 kb on - strand, within QEN71_RS03985 at 882.540 kb on - strand, within QEN71_RS03985 at 882.540 kb on - strand, within QEN71_RS03985 at 882.713 kb on + strand, within QEN71_RS03985 at 882.713 kb on + strand, within QEN71_RS03985 at 882.713 kb on + strand, within QEN71_RS03985 at 882.713 kb on + strand, within QEN71_RS03985 at 882.714 kb on - strand, within QEN71_RS03985 at 882.714 kb on - strand, within QEN71_RS03985 at 882.714 kb on - strand, within QEN71_RS03985 at 882.714 kb on - strand, within QEN71_RS03985 at 882.714 kb on - strand, within QEN71_RS03985 at 882.714 kb on - strand, within QEN71_RS03985 at 882.714 kb on - strand, within QEN71_RS03985 at 882.714 kb on - strand, within QEN71_RS03985 at 882.850 kb on + strand, within QEN71_RS03985 at 882.850 kb on + strand, within QEN71_RS03985 at 882.850 kb on + strand, within QEN71_RS03985 at 882.850 kb on + strand, within QEN71_RS03985 at 883.085 kb on + strand, within QEN71_RS03985 at 883.085 kb on + strand, within QEN71_RS03985 at 883.086 kb on - strand, within QEN71_RS03985 at 883.086 kb on - strand, within QEN71_RS03985 at 883.100 kb on - strand, within QEN71_RS03985 at 883.192 kb on + strand, within QEN71_RS03985 at 883.192 kb on + strand, within QEN71_RS03985 at 883.193 kb on - strand, within QEN71_RS03985 at 883.193 kb on - strand, within QEN71_RS03985 at 883.193 kb on - strand, within QEN71_RS03985 at 883.193 kb on - strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.277 kb on + strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.278 kb on - strand, within QEN71_RS03985 at 883.841 kb on + strand at 883.841 kb on + strand at 883.841 kb on + strand at 883.842 kb on - strand at 883.862 kb on + strand at 883.862 kb on + strand at 883.862 kb on + strand at 883.862 kb on + strand at 883.862 kb on + strand at 883.862 kb on + strand at 883.862 kb on + strand at 883.862 kb on + strand at 883.862 kb on + strand at 883.862 kb on + strand at 883.862 kb on + strand at 883.862 kb on + strand at 883.863 kb on - strand at 883.863 kb on - strand at 883.863 kb on - strand at 883.863 kb on - strand at 883.863 kb on - strand at 883.863 kb on - strand at 883.991 kb on - strand at 884.051 kb on + strand at 884.051 kb on + strand at 884.051 kb on + strand at 884.052 kb on - strand at 884.052 kb on - strand at 884.052 kb on - strand at 884.061 kb on + strand at 884.061 kb on + strand at 884.062 kb on - strand at 884.062 kb on - strand at 884.062 kb on - strand at 884.108 kb on - strand, within QEN71_RS03990 at 884.108 kb on - strand, within QEN71_RS03990 at 884.302 kb on + strand at 884.302 kb on + strand at 884.302 kb on + strand at 884.302 kb on + strand at 884.302 kb on + strand at 884.302 kb on + strand at 884.302 kb on + strand at 884.302 kb on + strand at 884.302 kb on + strand at 884.302 kb on + strand at 884.302 kb on + strand at 884.302 kb on + strand at 884.302 kb on + strand at 884.302 kb on + strand at 884.303 kb on - strand at 884.303 kb on - strand at 884.303 kb on - strand at 884.303 kb on - strand at 884.303 kb on - strand at 884.303 kb on - strand at 884.303 kb on - strand at 884.303 kb on - strand at 884.303 kb on - strand at 884.303 kb on - strand at 884.325 kb on + strand at 884.325 kb on + strand at 884.325 kb on + strand at 884.325 kb on + strand at 884.326 kb on - strand at 884.326 kb on - strand at 884.330 kb on - strand at 884.394 kb on + strand at 884.395 kb on - strand at 884.395 kb on - strand at 884.395 kb on - strand at 884.455 kb on - strand at 884.455 kb on - strand at 884.533 kb on + strand at 884.533 kb on + strand at 884.534 kb on - strand at 884.534 kb on - strand at 884.534 kb on - strand at 884.534 kb on - strand at 884.534 kb on - strand at 884.535 kb on + strand at 884.536 kb on - strand at 884.536 kb on - strand at 884.536 kb on - strand at 884.536 kb on - strand at 884.536 kb on - strand at 884.536 kb on - strand at 884.536 kb on - strand at 884.536 kb on - strand at 884.724 kb on + strand, within QEN71_RS03995 at 884.724 kb on + strand, within QEN71_RS03995 at 884.724 kb on + strand, within QEN71_RS03995 at 884.724 kb on + strand, within QEN71_RS03995 at 884.724 kb on + strand, within QEN71_RS03995 at 884.724 kb on + strand, within QEN71_RS03995 at 884.725 kb on - strand, within QEN71_RS03995 at 884.725 kb on - strand, within QEN71_RS03995 at 884.725 kb on - strand, within QEN71_RS03995 at 884.725 kb on - strand, within QEN71_RS03995 at 884.725 kb on - strand, within QEN71_RS03995 at 884.725 kb on - strand, within QEN71_RS03995 at 884.737 kb on + strand, within QEN71_RS03995 at 884.738 kb on - strand, within QEN71_RS03995 at 884.797 kb on - strand, within QEN71_RS03995 at 884.797 kb on - strand, within QEN71_RS03995 at 884.797 kb on - strand, within QEN71_RS03995 at 884.797 kb on - strand, within QEN71_RS03995 at 884.797 kb on - strand, within QEN71_RS03995 at 884.797 kb on - strand, within QEN71_RS03995 at 884.879 kb on - strand, within QEN71_RS03995 at 884.919 kb on + strand, within QEN71_RS03995 at 884.920 kb on - strand, within QEN71_RS03995
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 881,318 - QEN71_RS03980 0.26 +0.8 881,318 - QEN71_RS03980 0.26 -2.3 881,318 - QEN71_RS03980 0.26 -0.1 881,440 + QEN71_RS03980 0.37 +0.7 881,440 + QEN71_RS03980 0.37 -0.7 881,441 - QEN71_RS03980 0.38 +1.6 881,466 + QEN71_RS03980 0.40 -0.7 881,467 - QEN71_RS03980 0.40 +0.1 881,679 + QEN71_RS03980 0.59 +1.1 881,679 + QEN71_RS03980 0.59 -0.6 881,679 + QEN71_RS03980 0.59 -0.0 881,679 + QEN71_RS03980 0.59 -0.4 881,680 - QEN71_RS03980 0.59 +0.3 881,680 - QEN71_RS03980 0.59 -0.0 881,797 + QEN71_RS03980 0.70 +0.8 881,884 + QEN71_RS03980 0.78 -0.4 882,124 + +0.6 882,124 + +0.2 882,124 + -0.3 882,124 + -1.7 882,124 + +0.3 882,125 - -1.0 882,125 - -0.3 882,125 - -0.1 882,125 - +0.7 882,201 + -0.7 882,201 + -0.3 882,201 + +0.2 882,202 - -1.3 882,202 - +1.2 882,202 - -2.0 882,202 - -0.1 882,202 - +1.4 882,202 - -0.3 882,202 - -0.3 882,206 + -1.1 882,206 + +1.5 882,206 + -0.3 882,206 + +0.8 882,207 - -0.2 882,207 - +0.7 882,207 - +0.6 882,258 + -0.3 882,258 + +0.3 882,259 - +0.3 882,479 + QEN71_RS03985 0.14 -1.1 882,480 - QEN71_RS03985 0.14 -0.9 882,480 - QEN71_RS03985 0.14 +1.3 882,539 + QEN71_RS03985 0.17 +0.2 882,539 + QEN71_RS03985 0.17 -0.8 882,539 + QEN71_RS03985 0.17 -0.4 882,540 - QEN71_RS03985 0.18 -0.0 882,540 - QEN71_RS03985 0.18 +0.8 882,540 - QEN71_RS03985 0.18 +0.2 882,713 + QEN71_RS03985 0.27 -0.4 882,713 + QEN71_RS03985 0.27 -0.3 882,713 + QEN71_RS03985 0.27 +0.8 882,713 + QEN71_RS03985 0.27 -0.3 882,714 - QEN71_RS03985 0.28 -0.8 882,714 - QEN71_RS03985 0.28 +1.0 882,714 - QEN71_RS03985 0.28 -0.2 882,714 - QEN71_RS03985 0.28 +0.1 882,714 - QEN71_RS03985 0.28 +0.5 882,714 - QEN71_RS03985 0.28 +0.1 882,714 - QEN71_RS03985 0.28 +0.2 882,714 - QEN71_RS03985 0.28 -0.8 882,850 + QEN71_RS03985 0.35 -1.4 882,850 + QEN71_RS03985 0.35 -0.6 882,850 + QEN71_RS03985 0.35 -1.4 882,850 + QEN71_RS03985 0.35 +0.7 883,085 + QEN71_RS03985 0.49 -1.3 883,085 + QEN71_RS03985 0.49 +1.0 883,086 - QEN71_RS03985 0.49 -1.3 883,086 - QEN71_RS03985 0.49 +0.2 883,100 - QEN71_RS03985 0.50 -0.2 883,192 + QEN71_RS03985 0.55 +1.0 883,192 + QEN71_RS03985 0.55 -0.1 883,193 - QEN71_RS03985 0.55 +0.5 883,193 - QEN71_RS03985 0.55 -0.1 883,193 - QEN71_RS03985 0.55 +0.3 883,193 - QEN71_RS03985 0.55 -0.5 883,277 + QEN71_RS03985 0.60 +0.9 883,277 + QEN71_RS03985 0.60 -1.1 883,277 + QEN71_RS03985 0.60 +0.2 883,277 + QEN71_RS03985 0.60 -0.9 883,277 + QEN71_RS03985 0.60 -0.8 883,277 + QEN71_RS03985 0.60 +0.4 883,277 + QEN71_RS03985 0.60 -0.8 883,277 + QEN71_RS03985 0.60 +0.2 883,277 + QEN71_RS03985 0.60 -1.0 883,277 + QEN71_RS03985 0.60 +0.4 883,277 + QEN71_RS03985 0.60 +0.7 883,277 + QEN71_RS03985 0.60 +0.1 883,277 + QEN71_RS03985 0.60 -0.4 883,277 + QEN71_RS03985 0.60 -0.5 883,277 + QEN71_RS03985 0.60 +0.4 883,277 + QEN71_RS03985 0.60 -2.1 883,277 + QEN71_RS03985 0.60 -1.0 883,277 + QEN71_RS03985 0.60 -1.3 883,277 + QEN71_RS03985 0.60 -0.3 883,277 + QEN71_RS03985 0.60 -0.6 883,278 - QEN71_RS03985 0.60 +1.9 883,278 - QEN71_RS03985 0.60 -0.7 883,278 - QEN71_RS03985 0.60 +0.4 883,278 - QEN71_RS03985 0.60 +0.4 883,278 - QEN71_RS03985 0.60 +0.2 883,278 - QEN71_RS03985 0.60 -0.0 883,278 - QEN71_RS03985 0.60 -0.6 883,278 - QEN71_RS03985 0.60 +0.1 883,278 - QEN71_RS03985 0.60 +0.7 883,278 - QEN71_RS03985 0.60 -0.5 883,278 - QEN71_RS03985 0.60 +0.4 883,278 - QEN71_RS03985 0.60 +0.2 883,278 - QEN71_RS03985 0.60 +0.1 883,278 - QEN71_RS03985 0.60 +0.2 883,278 - QEN71_RS03985 0.60 +1.0 883,278 - QEN71_RS03985 0.60 -0.3 883,278 - QEN71_RS03985 0.60 -0.0 883,278 - QEN71_RS03985 0.60 +0.1 883,841 + -0.6 883,841 + -0.0 883,841 + -0.4 883,842 - -0.6 883,862 + +0.6 883,862 + +0.4 883,862 + -0.7 883,862 + -0.6 883,862 + -0.6 883,862 + +1.5 883,862 + +0.2 883,862 + -1.2 883,862 + -0.4 883,862 + -0.0 883,862 + -0.3 883,862 + -0.8 883,863 - -0.5 883,863 - +0.6 883,863 - -0.0 883,863 - +0.1 883,863 - +1.3 883,863 - +0.2 883,991 - -0.2 884,051 + -1.4 884,051 + +0.8 884,051 + -0.0 884,052 - +1.2 884,052 - -0.4 884,052 - -0.3 884,061 + -0.4 884,061 + +0.3 884,062 - +0.5 884,062 - -0.1 884,062 - +0.5 884,108 - QEN71_RS03990 0.19 -0.0 884,108 - QEN71_RS03990 0.19 -0.5 884,302 + +0.6 884,302 + +0.3 884,302 + -1.1 884,302 + -0.1 884,302 + +0.2 884,302 + +1.5 884,302 + +0.2 884,302 + +0.9 884,302 + -1.3 884,302 + -0.3 884,302 + -1.1 884,302 + -0.5 884,302 + -0.5 884,302 + -0.4 884,303 - -0.2 884,303 - +2.0 884,303 - -0.2 884,303 - -0.7 884,303 - +0.4 884,303 - -2.0 884,303 - +0.3 884,303 - -0.7 884,303 - -0.1 884,303 - -0.4 884,325 + +1.0 884,325 + +0.3 884,325 + +0.5 884,325 + +0.2 884,326 - +0.5 884,326 - +0.8 884,330 - -0.7 884,394 + +1.1 884,395 - -0.3 884,395 - -1.0 884,395 - -0.7 884,455 - -0.3 884,455 - -1.3 884,533 + +0.1 884,533 + -0.5 884,534 - -1.0 884,534 - +0.1 884,534 - -1.3 884,534 - +0.4 884,534 - -0.2 884,535 + +0.4 884,536 - +0.3 884,536 - +0.8 884,536 - -0.8 884,536 - -0.7 884,536 - -2.8 884,536 - -0.6 884,536 - -0.5 884,536 - +1.5 884,724 + QEN71_RS03995 0.14 +0.5 884,724 + QEN71_RS03995 0.14 -0.3 884,724 + QEN71_RS03995 0.14 -0.7 884,724 + QEN71_RS03995 0.14 -0.8 884,724 + QEN71_RS03995 0.14 -0.6 884,724 + QEN71_RS03995 0.14 +0.1 884,725 - QEN71_RS03995 0.14 +1.1 884,725 - QEN71_RS03995 0.14 -2.6 884,725 - QEN71_RS03995 0.14 -0.3 884,725 - QEN71_RS03995 0.14 +1.2 884,725 - QEN71_RS03995 0.14 -0.4 884,725 - QEN71_RS03995 0.14 +0.2 884,737 + QEN71_RS03995 0.14 -0.1 884,738 - QEN71_RS03995 0.14 +1.1 884,797 - QEN71_RS03995 0.16 -2.6 884,797 - QEN71_RS03995 0.16 -0.5 884,797 - QEN71_RS03995 0.16 -0.1 884,797 - QEN71_RS03995 0.16 -1.5 884,797 - QEN71_RS03995 0.16 -0.2 884,797 - QEN71_RS03995 0.16 -0.6 884,879 - QEN71_RS03995 0.19 +1.2 884,919 + QEN71_RS03995 0.20 +0.2 884,920 - QEN71_RS03995 0.20 -5.0
Or see this region's nucleotide sequence