Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS01965

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS01960 and QEN71_RS01965 are separated by 55 nucleotidesQEN71_RS01965 and QEN71_RS01970 are separated by 524 nucleotides QEN71_RS01960: QEN71_RS01960 - D-aminoacylase, at 432,464 to 433,951 _RS01960 QEN71_RS01965: QEN71_RS01965 - RidA family protein, at 434,007 to 434,393 _RS01965 QEN71_RS01970: QEN71_RS01970 - IS481 family transposase, at 434,918 to 436,057 _RS01970 Position (kb) 434 435Strain fitness (log2 ratio) -2 -1 0 1 2at 433.040 kb on + strand, within QEN71_RS01960at 433.040 kb on + strand, within QEN71_RS01960at 433.040 kb on + strand, within QEN71_RS01960at 433.041 kb on - strand, within QEN71_RS01960at 433.041 kb on - strand, within QEN71_RS01960at 433.115 kb on + strand, within QEN71_RS01960at 433.115 kb on + strand, within QEN71_RS01960at 433.115 kb on + strand, within QEN71_RS01960at 433.116 kb on - strand, within QEN71_RS01960at 433.116 kb on - strand, within QEN71_RS01960at 433.116 kb on - strand, within QEN71_RS01960at 433.173 kb on - strand, within QEN71_RS01960at 433.173 kb on - strand, within QEN71_RS01960at 433.319 kb on + strand, within QEN71_RS01960at 433.319 kb on + strand, within QEN71_RS01960at 433.319 kb on + strand, within QEN71_RS01960at 433.319 kb on + strand, within QEN71_RS01960at 433.320 kb on - strand, within QEN71_RS01960at 433.320 kb on - strand, within QEN71_RS01960at 433.320 kb on - strand, within QEN71_RS01960at 433.496 kb on + strand, within QEN71_RS01960at 433.496 kb on + strand, within QEN71_RS01960at 433.496 kb on + strand, within QEN71_RS01960at 433.496 kb on + strand, within QEN71_RS01960at 433.497 kb on - strand, within QEN71_RS01960at 433.497 kb on - strand, within QEN71_RS01960at 433.631 kb on + strand, within QEN71_RS01960at 433.631 kb on + strand, within QEN71_RS01960at 433.631 kb on + strand, within QEN71_RS01960at 433.631 kb on + strand, within QEN71_RS01960at 433.631 kb on + strand, within QEN71_RS01960at 433.632 kb on - strand, within QEN71_RS01960at 433.632 kb on - strand, within QEN71_RS01960at 433.632 kb on - strand, within QEN71_RS01960at 433.632 kb on - strand, within QEN71_RS01960at 433.732 kb on + strand, within QEN71_RS01960at 433.732 kb on + strand, within QEN71_RS01960at 433.733 kb on - strand, within QEN71_RS01960at 433.823 kb on - strandat 433.823 kb on - strandat 433.986 kb on + strandat 433.986 kb on + strandat 434.270 kb on + strand, within QEN71_RS01965at 434.270 kb on + strand, within QEN71_RS01965at 434.270 kb on + strand, within QEN71_RS01965at 434.270 kb on + strand, within QEN71_RS01965at 434.271 kb on - strand, within QEN71_RS01965at 434.271 kb on - strand, within QEN71_RS01965at 434.271 kb on - strand, within QEN71_RS01965at 434.273 kb on + strand, within QEN71_RS01965at 434.274 kb on - strand, within QEN71_RS01965at 434.274 kb on - strand, within QEN71_RS01965at 434.289 kb on + strand, within QEN71_RS01965at 434.289 kb on + strand, within QEN71_RS01965at 434.289 kb on + strand, within QEN71_RS01965at 434.289 kb on + strand, within QEN71_RS01965at 434.289 kb on + strand, within QEN71_RS01965at 434.290 kb on - strand, within QEN71_RS01965at 434.290 kb on - strand, within QEN71_RS01965at 434.290 kb on - strand, within QEN71_RS01965at 434.290 kb on - strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.339 kb on + strand, within QEN71_RS01965at 434.340 kb on - strand, within QEN71_RS01965at 434.348 kb on + strand, within QEN71_RS01965at 434.349 kb on - strand, within QEN71_RS01965at 434.373 kb on + strandat 434.373 kb on + strandat 434.374 kb on - strandat 434.375 kb on + strandat 434.375 kb on + strandat 434.375 kb on + strandat 434.375 kb on + strandat 434.375 kb on + strandat 434.375 kb on + strandat 434.375 kb on + strandat 434.375 kb on + strandat 434.376 kb on - strandat 434.376 kb on - strandat 434.376 kb on - strandat 434.376 kb on - strandat 434.376 kb on - strandat 434.519 kb on + strandat 434.519 kb on + strandat 434.519 kb on + strandat 434.519 kb on + strandat 434.564 kb on - strandat 434.590 kb on - strandat 434.590 kb on - strandat 434.648 kb on - strandat 434.648 kb on - strandat 434.648 kb on - strandat 434.748 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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433,040 + QEN71_RS01960 0.39 -0.3
433,040 + QEN71_RS01960 0.39 +0.2
433,040 + QEN71_RS01960 0.39 -0.8
433,041 - QEN71_RS01960 0.39 -0.7
433,041 - QEN71_RS01960 0.39 +0.0
433,115 + QEN71_RS01960 0.44 +0.6
433,115 + QEN71_RS01960 0.44 -0.1
433,115 + QEN71_RS01960 0.44 +0.7
433,116 - QEN71_RS01960 0.44 +0.6
433,116 - QEN71_RS01960 0.44 -2.6
433,116 - QEN71_RS01960 0.44 -0.8
433,173 - QEN71_RS01960 0.48 +0.0
433,173 - QEN71_RS01960 0.48 -0.1
433,319 + QEN71_RS01960 0.57 +0.5
433,319 + QEN71_RS01960 0.57 +0.0
433,319 + QEN71_RS01960 0.57 -0.1
433,319 + QEN71_RS01960 0.57 +0.1
433,320 - QEN71_RS01960 0.58 +1.1
433,320 - QEN71_RS01960 0.58 +1.3
433,320 - QEN71_RS01960 0.58 +2.1
433,496 + QEN71_RS01960 0.69 -0.4
433,496 + QEN71_RS01960 0.69 +1.6
433,496 + QEN71_RS01960 0.69 -0.9
433,496 + QEN71_RS01960 0.69 +0.1
433,497 - QEN71_RS01960 0.69 +0.9
433,497 - QEN71_RS01960 0.69 -0.8
433,631 + QEN71_RS01960 0.78 -2.1
433,631 + QEN71_RS01960 0.78 -0.3
433,631 + QEN71_RS01960 0.78 -0.3
433,631 + QEN71_RS01960 0.78 +0.0
433,631 + QEN71_RS01960 0.78 -0.8
433,632 - QEN71_RS01960 0.78 +0.3
433,632 - QEN71_RS01960 0.78 +0.3
433,632 - QEN71_RS01960 0.78 +0.7
433,632 - QEN71_RS01960 0.78 +0.5
433,732 + QEN71_RS01960 0.85 -0.4
433,732 + QEN71_RS01960 0.85 +0.5
433,733 - QEN71_RS01960 0.85 -1.3
433,823 - -0.9
433,823 - +0.0
433,986 + -0.2
433,986 + +0.2
434,270 + QEN71_RS01965 0.68 -0.8
434,270 + QEN71_RS01965 0.68 +1.4
434,270 + QEN71_RS01965 0.68 +0.5
434,270 + QEN71_RS01965 0.68 -0.7
434,271 - QEN71_RS01965 0.68 -1.7
434,271 - QEN71_RS01965 0.68 +1.2
434,271 - QEN71_RS01965 0.68 +1.1
434,273 + QEN71_RS01965 0.69 +0.1
434,274 - QEN71_RS01965 0.69 +0.7
434,274 - QEN71_RS01965 0.69 -1.7
434,289 + QEN71_RS01965 0.73 -0.3
434,289 + QEN71_RS01965 0.73 +0.7
434,289 + QEN71_RS01965 0.73 +0.0
434,289 + QEN71_RS01965 0.73 +0.2
434,289 + QEN71_RS01965 0.73 -1.3
434,290 - QEN71_RS01965 0.73 +2.5
434,290 - QEN71_RS01965 0.73 -0.1
434,290 - QEN71_RS01965 0.73 +0.4
434,290 - QEN71_RS01965 0.73 -1.5
434,333 + QEN71_RS01965 0.84 +0.2
434,333 + QEN71_RS01965 0.84 -1.1
434,333 + QEN71_RS01965 0.84 -0.3
434,333 + QEN71_RS01965 0.84 +0.7
434,333 + QEN71_RS01965 0.84 -0.3
434,333 + QEN71_RS01965 0.84 +0.2
434,333 + QEN71_RS01965 0.84 +1.3
434,333 + QEN71_RS01965 0.84 -0.9
434,333 + QEN71_RS01965 0.84 -0.0
434,333 + QEN71_RS01965 0.84 +1.0
434,333 + QEN71_RS01965 0.84 +0.0
434,333 + QEN71_RS01965 0.84 +2.0
434,334 - QEN71_RS01965 0.84 -0.6
434,334 - QEN71_RS01965 0.84 -1.2
434,334 - QEN71_RS01965 0.84 +0.0
434,334 - QEN71_RS01965 0.84 -1.1
434,334 - QEN71_RS01965 0.84 +0.4
434,334 - QEN71_RS01965 0.84 -0.2
434,334 - QEN71_RS01965 0.84 -1.1
434,334 - QEN71_RS01965 0.84 -1.0
434,334 - QEN71_RS01965 0.84 -1.0
434,334 - QEN71_RS01965 0.84 -0.3
434,334 - QEN71_RS01965 0.84 -1.0
434,334 - QEN71_RS01965 0.84 -0.1
434,334 - QEN71_RS01965 0.84 -0.9
434,334 - QEN71_RS01965 0.84 -0.1
434,334 - QEN71_RS01965 0.84 +0.5
434,334 - QEN71_RS01965 0.84 -1.6
434,334 - QEN71_RS01965 0.84 +0.5
434,339 + QEN71_RS01965 0.86 -0.5
434,340 - QEN71_RS01965 0.86 +0.9
434,348 + QEN71_RS01965 0.88 -0.8
434,349 - QEN71_RS01965 0.88 +0.1
434,373 + +0.2
434,373 + -1.4
434,374 - -1.2
434,375 + -0.6
434,375 + +1.3
434,375 + +0.2
434,375 + -0.3
434,375 + -1.8
434,375 + -1.0
434,375 + +0.0
434,375 + +0.9
434,376 - -0.6
434,376 - -0.9
434,376 - -0.0
434,376 - -1.0
434,376 - -0.9
434,519 + +1.0
434,519 + -0.6
434,519 + -0.1
434,519 + +0.1
434,564 - -0.4
434,590 - -0.4
434,590 - +0.6
434,648 - -1.4
434,648 - -0.2
434,648 - +1.4
434,748 - +0.2

Or see this region's nucleotide sequence