Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02900 and LRK53_RS02905 are separated by 74 nucleotides LRK53_RS02905 and LRK53_RS02910 overlap by 4 nucleotides LRK53_RS02910 and LRK53_RS02915 overlap by 4 nucleotides
LRK53_RS02900: LRK53_RS02900 - glycosyltransferase family 39 protein, at 670,320 to 672,035
_RS02900
LRK53_RS02905: LRK53_RS02905 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 672,110 to 673,411
_RS02905
LRK53_RS02910: LRK53_RS02910 - methionyl-tRNA formyltransferase, at 673,408 to 674,349
_RS02910
LRK53_RS02915: LRK53_RS02915 - peptide deformylase, at 674,346 to 674,855
_RS02915
Position (kb) 672
673
674 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 671.200 kb on + strand, within LRK53_RS02900 at 671.200 kb on + strand, within LRK53_RS02900 at 671.200 kb on + strand, within LRK53_RS02900 at 671.200 kb on + strand, within LRK53_RS02900 at 671.200 kb on + strand, within LRK53_RS02900 at 671.200 kb on + strand, within LRK53_RS02900 at 671.201 kb on - strand, within LRK53_RS02900 at 671.201 kb on - strand, within LRK53_RS02900 at 671.201 kb on - strand, within LRK53_RS02900 at 671.201 kb on - strand, within LRK53_RS02900 at 671.201 kb on - strand, within LRK53_RS02900 at 671.236 kb on + strand, within LRK53_RS02900 at 671.275 kb on + strand, within LRK53_RS02900 at 671.275 kb on + strand, within LRK53_RS02900 at 671.275 kb on + strand, within LRK53_RS02900 at 671.275 kb on + strand, within LRK53_RS02900 at 671.275 kb on + strand, within LRK53_RS02900 at 671.275 kb on + strand, within LRK53_RS02900 at 671.276 kb on - strand, within LRK53_RS02900 at 671.276 kb on - strand, within LRK53_RS02900 at 671.276 kb on - strand, within LRK53_RS02900 at 671.276 kb on - strand, within LRK53_RS02900 at 671.276 kb on - strand, within LRK53_RS02900 at 671.276 kb on - strand, within LRK53_RS02900 at 671.276 kb on - strand, within LRK53_RS02900 at 671.276 kb on - strand, within LRK53_RS02900 at 671.276 kb on - strand, within LRK53_RS02900 at 671.276 kb on - strand, within LRK53_RS02900 at 671.434 kb on + strand, within LRK53_RS02900 at 671.434 kb on + strand, within LRK53_RS02900 at 671.434 kb on + strand, within LRK53_RS02900 at 671.434 kb on + strand, within LRK53_RS02900 at 671.435 kb on - strand, within LRK53_RS02900 at 671.435 kb on - strand, within LRK53_RS02900 at 671.435 kb on - strand, within LRK53_RS02900 at 671.435 kb on - strand, within LRK53_RS02900 at 671.435 kb on - strand, within LRK53_RS02900 at 671.435 kb on - strand, within LRK53_RS02900 at 671.435 kb on - strand, within LRK53_RS02900 at 671.435 kb on - strand, within LRK53_RS02900 at 671.435 kb on - strand, within LRK53_RS02900 at 671.435 kb on - strand, within LRK53_RS02900 at 671.439 kb on + strand, within LRK53_RS02900 at 671.440 kb on - strand, within LRK53_RS02900 at 671.560 kb on + strand, within LRK53_RS02900 at 671.561 kb on - strand, within LRK53_RS02900 at 671.561 kb on - strand, within LRK53_RS02900 at 671.620 kb on + strand, within LRK53_RS02900 at 671.620 kb on + strand, within LRK53_RS02900 at 671.620 kb on + strand, within LRK53_RS02900 at 671.620 kb on + strand, within LRK53_RS02900 at 671.620 kb on + strand, within LRK53_RS02900 at 671.620 kb on + strand, within LRK53_RS02900 at 671.620 kb on + strand, within LRK53_RS02900 at 671.620 kb on + strand, within LRK53_RS02900 at 671.620 kb on + strand, within LRK53_RS02900 at 671.621 kb on - strand, within LRK53_RS02900 at 671.621 kb on - strand, within LRK53_RS02900 at 671.621 kb on - strand, within LRK53_RS02900 at 671.621 kb on - strand, within LRK53_RS02900 at 671.621 kb on - strand, within LRK53_RS02900 at 671.621 kb on - strand, within LRK53_RS02900 at 671.621 kb on - strand, within LRK53_RS02900 at 671.701 kb on + strand, within LRK53_RS02900 at 671.701 kb on + strand, within LRK53_RS02900 at 671.701 kb on + strand, within LRK53_RS02900 at 671.701 kb on + strand, within LRK53_RS02900 at 671.701 kb on + strand, within LRK53_RS02900 at 671.701 kb on + strand, within LRK53_RS02900 at 671.701 kb on + strand, within LRK53_RS02900 at 671.702 kb on - strand, within LRK53_RS02900 at 671.702 kb on - strand, within LRK53_RS02900 at 671.776 kb on + strand, within LRK53_RS02900 at 671.776 kb on + strand, within LRK53_RS02900 at 671.776 kb on + strand, within LRK53_RS02900 at 671.776 kb on + strand, within LRK53_RS02900 at 671.776 kb on + strand, within LRK53_RS02900 at 671.776 kb on + strand, within LRK53_RS02900 at 671.776 kb on + strand, within LRK53_RS02900 at 671.776 kb on + strand, within LRK53_RS02900 at 671.776 kb on + strand, within LRK53_RS02900 at 671.776 kb on + strand, within LRK53_RS02900 at 671.777 kb on - strand, within LRK53_RS02900 at 671.777 kb on - strand, within LRK53_RS02900 at 671.777 kb on - strand, within LRK53_RS02900 at 671.777 kb on - strand, within LRK53_RS02900 at 671.777 kb on - strand, within LRK53_RS02900 at 671.777 kb on - strand, within LRK53_RS02900 at 671.777 kb on - strand, within LRK53_RS02900 at 671.777 kb on - strand, within LRK53_RS02900 at 671.777 kb on - strand, within LRK53_RS02900 at 671.777 kb on - strand, within LRK53_RS02900 at 671.777 kb on - strand, within LRK53_RS02900 at 671.777 kb on - strand, within LRK53_RS02900 at 671.779 kb on + strand, within LRK53_RS02900 at 671.779 kb on + strand, within LRK53_RS02900 at 671.779 kb on + strand, within LRK53_RS02900 at 671.779 kb on + strand, within LRK53_RS02900 at 671.779 kb on + strand, within LRK53_RS02900 at 671.779 kb on + strand, within LRK53_RS02900 at 671.779 kb on + strand, within LRK53_RS02900 at 671.779 kb on + strand, within LRK53_RS02900 at 671.780 kb on - strand, within LRK53_RS02900 at 671.780 kb on - strand, within LRK53_RS02900 at 671.780 kb on - strand, within LRK53_RS02900 at 671.780 kb on - strand, within LRK53_RS02900 at 671.780 kb on - strand, within LRK53_RS02900 at 671.780 kb on - strand, within LRK53_RS02900 at 671.780 kb on - strand, within LRK53_RS02900 at 671.780 kb on - strand, within LRK53_RS02900 at 671.780 kb on - strand, within LRK53_RS02900 at 671.780 kb on - strand, within LRK53_RS02900 at 671.780 kb on - strand, within LRK53_RS02900 at 671.824 kb on + strand, within LRK53_RS02900 at 672.073 kb on + strand at 672.073 kb on + strand at 672.074 kb on - strand at 672.074 kb on - strand at 672.074 kb on - strand at 672.112 kb on - strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.135 kb on + strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.136 kb on - strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.138 kb on + strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.139 kb on - strand at 672.300 kb on + strand, within LRK53_RS02905 at 672.300 kb on + strand, within LRK53_RS02905 at 672.300 kb on + strand, within LRK53_RS02905 at 672.300 kb on + strand, within LRK53_RS02905 at 672.300 kb on + strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.301 kb on - strand, within LRK53_RS02905 at 672.921 kb on - strand, within LRK53_RS02905 at 673.093 kb on + strand, within LRK53_RS02905 at 673.093 kb on + strand, within LRK53_RS02905 at 673.093 kb on + strand, within LRK53_RS02905 at 673.094 kb on - strand, within LRK53_RS02905 at 673.094 kb on - strand, within LRK53_RS02905 at 673.094 kb on - strand, within LRK53_RS02905 at 673.128 kb on + strand, within LRK53_RS02905 at 673.128 kb on + strand, within LRK53_RS02905 at 673.128 kb on + strand, within LRK53_RS02905 at 673.129 kb on - strand, within LRK53_RS02905 at 673.129 kb on - strand, within LRK53_RS02905 at 673.129 kb on - strand, within LRK53_RS02905
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM remove 671,200 + LRK53_RS02900 0.51 +0.1 671,200 + LRK53_RS02900 0.51 -0.2 671,200 + LRK53_RS02900 0.51 -1.2 671,200 + LRK53_RS02900 0.51 -0.2 671,200 + LRK53_RS02900 0.51 -0.1 671,200 + LRK53_RS02900 0.51 -1.7 671,201 - LRK53_RS02900 0.51 -2.5 671,201 - LRK53_RS02900 0.51 -0.2 671,201 - LRK53_RS02900 0.51 -1.0 671,201 - LRK53_RS02900 0.51 -1.4 671,201 - LRK53_RS02900 0.51 +0.4 671,236 + LRK53_RS02900 0.53 -2.6 671,275 + LRK53_RS02900 0.56 +0.8 671,275 + LRK53_RS02900 0.56 -1.5 671,275 + LRK53_RS02900 0.56 +1.1 671,275 + LRK53_RS02900 0.56 +0.6 671,275 + LRK53_RS02900 0.56 -0.4 671,275 + LRK53_RS02900 0.56 -0.7 671,276 - LRK53_RS02900 0.56 -1.0 671,276 - LRK53_RS02900 0.56 -2.5 671,276 - LRK53_RS02900 0.56 -1.9 671,276 - LRK53_RS02900 0.56 +0.8 671,276 - LRK53_RS02900 0.56 +0.5 671,276 - LRK53_RS02900 0.56 -0.7 671,276 - LRK53_RS02900 0.56 +0.2 671,276 - LRK53_RS02900 0.56 -2.1 671,276 - LRK53_RS02900 0.56 -1.9 671,276 - LRK53_RS02900 0.56 -0.8 671,434 + LRK53_RS02900 0.65 +1.9 671,434 + LRK53_RS02900 0.65 -0.8 671,434 + LRK53_RS02900 0.65 -1.1 671,434 + LRK53_RS02900 0.65 +0.2 671,435 - LRK53_RS02900 0.65 -1.4 671,435 - LRK53_RS02900 0.65 -0.1 671,435 - LRK53_RS02900 0.65 -0.1 671,435 - LRK53_RS02900 0.65 -0.7 671,435 - LRK53_RS02900 0.65 -0.6 671,435 - LRK53_RS02900 0.65 -0.2 671,435 - LRK53_RS02900 0.65 +0.1 671,435 - LRK53_RS02900 0.65 -0.4 671,435 - LRK53_RS02900 0.65 -2.2 671,435 - LRK53_RS02900 0.65 -1.0 671,439 + LRK53_RS02900 0.65 +1.4 671,440 - LRK53_RS02900 0.65 -1.3 671,560 + LRK53_RS02900 0.72 -0.8 671,561 - LRK53_RS02900 0.72 -1.7 671,561 - LRK53_RS02900 0.72 -0.9 671,620 + LRK53_RS02900 0.76 -0.5 671,620 + LRK53_RS02900 0.76 -1.1 671,620 + LRK53_RS02900 0.76 -0.1 671,620 + LRK53_RS02900 0.76 -1.1 671,620 + LRK53_RS02900 0.76 -1.9 671,620 + LRK53_RS02900 0.76 -1.7 671,620 + LRK53_RS02900 0.76 -0.1 671,620 + LRK53_RS02900 0.76 -0.1 671,620 + LRK53_RS02900 0.76 -0.9 671,621 - LRK53_RS02900 0.76 -1.2 671,621 - LRK53_RS02900 0.76 -1.5 671,621 - LRK53_RS02900 0.76 -1.4 671,621 - LRK53_RS02900 0.76 -1.0 671,621 - LRK53_RS02900 0.76 -1.3 671,621 - LRK53_RS02900 0.76 -1.6 671,621 - LRK53_RS02900 0.76 -1.8 671,701 + LRK53_RS02900 0.80 -0.2 671,701 + LRK53_RS02900 0.80 +0.6 671,701 + LRK53_RS02900 0.80 -1.3 671,701 + LRK53_RS02900 0.80 -0.6 671,701 + LRK53_RS02900 0.80 -1.5 671,701 + LRK53_RS02900 0.80 -3.4 671,701 + LRK53_RS02900 0.80 -1.1 671,702 - LRK53_RS02900 0.81 -0.5 671,702 - LRK53_RS02900 0.81 +0.2 671,776 + LRK53_RS02900 0.85 -0.1 671,776 + LRK53_RS02900 0.85 -1.5 671,776 + LRK53_RS02900 0.85 +0.5 671,776 + LRK53_RS02900 0.85 -0.0 671,776 + LRK53_RS02900 0.85 -0.4 671,776 + LRK53_RS02900 0.85 +0.3 671,776 + LRK53_RS02900 0.85 +1.7 671,776 + LRK53_RS02900 0.85 +1.9 671,776 + LRK53_RS02900 0.85 -1.0 671,776 + LRK53_RS02900 0.85 -0.9 671,777 - LRK53_RS02900 0.85 +0.4 671,777 - LRK53_RS02900 0.85 -1.2 671,777 - LRK53_RS02900 0.85 -0.1 671,777 - LRK53_RS02900 0.85 +0.4 671,777 - LRK53_RS02900 0.85 -0.7 671,777 - LRK53_RS02900 0.85 -2.5 671,777 - LRK53_RS02900 0.85 +0.1 671,777 - LRK53_RS02900 0.85 +0.8 671,777 - LRK53_RS02900 0.85 -0.4 671,777 - LRK53_RS02900 0.85 -0.6 671,777 - LRK53_RS02900 0.85 -1.4 671,777 - LRK53_RS02900 0.85 +0.5 671,779 + LRK53_RS02900 0.85 -2.1 671,779 + LRK53_RS02900 0.85 -1.0 671,779 + LRK53_RS02900 0.85 -2.2 671,779 + LRK53_RS02900 0.85 -0.2 671,779 + LRK53_RS02900 0.85 -1.6 671,779 + LRK53_RS02900 0.85 -2.7 671,779 + LRK53_RS02900 0.85 -2.1 671,779 + LRK53_RS02900 0.85 -1.9 671,780 - LRK53_RS02900 0.85 -0.2 671,780 - LRK53_RS02900 0.85 -0.6 671,780 - LRK53_RS02900 0.85 -1.2 671,780 - LRK53_RS02900 0.85 +0.7 671,780 - LRK53_RS02900 0.85 -0.8 671,780 - LRK53_RS02900 0.85 -1.8 671,780 - LRK53_RS02900 0.85 +0.9 671,780 - LRK53_RS02900 0.85 -0.7 671,780 - LRK53_RS02900 0.85 -0.7 671,780 - LRK53_RS02900 0.85 -0.6 671,780 - LRK53_RS02900 0.85 -0.6 671,824 + LRK53_RS02900 0.88 +1.6 672,073 + -1.1 672,073 + -1.2 672,074 - -1.0 672,074 - +0.4 672,074 - -1.0 672,112 - +0.7 672,135 + -1.9 672,135 + -2.2 672,135 + -1.3 672,135 + -0.4 672,136 - -1.7 672,136 - -1.9 672,136 - -1.1 672,136 - -1.2 672,136 - -1.1 672,136 - -1.9 672,136 - -0.2 672,136 - -0.2 672,136 - -0.9 672,136 - -0.3 672,138 + -0.7 672,138 + -1.0 672,138 + -0.8 672,138 + -1.5 672,138 + -0.8 672,138 + +0.8 672,138 + -1.2 672,138 + -2.5 672,138 + -1.3 672,138 + -0.6 672,138 + -1.4 672,138 + -1.5 672,138 + +1.8 672,138 + -2.1 672,138 + +0.5 672,138 + -0.6 672,138 + -1.4 672,138 + -2.1 672,138 + -2.2 672,138 + -0.6 672,138 + +1.4 672,138 + +0.6 672,138 + -1.3 672,139 - -0.2 672,139 - +0.1 672,139 - -2.1 672,139 - -1.4 672,139 - -1.1 672,139 - +1.0 672,139 - -1.7 672,139 - -1.8 672,139 - -0.6 672,139 - -0.6 672,139 - -2.3 672,139 - -1.2 672,139 - -0.7 672,139 - -1.7 672,139 - -2.2 672,139 - -3.7 672,139 - -0.1 672,139 - -2.0 672,139 - +1.5 672,139 - +0.8 672,139 - -1.0 672,139 - -0.4 672,139 - -1.8 672,139 - -0.2 672,139 - -0.1 672,139 - -0.2 672,139 - -0.9 672,139 - +0.3 672,139 - -0.4 672,139 - -0.8 672,139 - -1.4 672,139 - -1.5 672,139 - -0.6 672,139 - -0.8 672,139 - -0.1 672,300 + LRK53_RS02905 0.15 -0.9 672,300 + LRK53_RS02905 0.15 +0.2 672,300 + LRK53_RS02905 0.15 -2.8 672,300 + LRK53_RS02905 0.15 -0.3 672,300 + LRK53_RS02905 0.15 -0.4 672,301 - LRK53_RS02905 0.15 -1.0 672,301 - LRK53_RS02905 0.15 -1.7 672,301 - LRK53_RS02905 0.15 -3.7 672,301 - LRK53_RS02905 0.15 -2.0 672,301 - LRK53_RS02905 0.15 -2.2 672,301 - LRK53_RS02905 0.15 -2.0 672,301 - LRK53_RS02905 0.15 -0.5 672,301 - LRK53_RS02905 0.15 -0.5 672,301 - LRK53_RS02905 0.15 -2.2 672,301 - LRK53_RS02905 0.15 +0.3 672,301 - LRK53_RS02905 0.15 -0.9 672,301 - LRK53_RS02905 0.15 -1.3 672,301 - LRK53_RS02905 0.15 -1.0 672,301 - LRK53_RS02905 0.15 -0.7 672,301 - LRK53_RS02905 0.15 -1.2 672,301 - LRK53_RS02905 0.15 -0.4 672,301 - LRK53_RS02905 0.15 +0.1 672,301 - LRK53_RS02905 0.15 -0.5 672,921 - LRK53_RS02905 0.62 -1.5 673,093 + LRK53_RS02905 0.75 -1.2 673,093 + LRK53_RS02905 0.75 -2.4 673,093 + LRK53_RS02905 0.75 -1.5 673,094 - LRK53_RS02905 0.76 -0.5 673,094 - LRK53_RS02905 0.76 -1.2 673,094 - LRK53_RS02905 0.76 -1.9 673,128 + LRK53_RS02905 0.78 +0.0 673,128 + LRK53_RS02905 0.78 +0.6 673,128 + LRK53_RS02905 0.78 -2.7 673,129 - LRK53_RS02905 0.78 -0.2 673,129 - LRK53_RS02905 0.78 +0.2 673,129 - LRK53_RS02905 0.78 -2.2
Or see this region's nucleotide sequence