Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS32380

Experiment: Motility_inner_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS32370 and QEN71_RS32375 are separated by 305 nucleotidesQEN71_RS32375 and QEN71_RS32380 are separated by 136 nucleotidesQEN71_RS32380 and QEN71_RS32385 overlap by 4 nucleotides QEN71_RS32370: QEN71_RS32370 - M23 family metallopeptidase, at 602,707 to 603,717 _RS32370 QEN71_RS32375: QEN71_RS32375 - carboxypeptidase-like regulatory domain-containing protein, at 604,023 to 604,475 _RS32375 QEN71_RS32380: QEN71_RS32380 - VOC family protein, at 604,612 to 604,992 _RS32380 QEN71_RS32385: QEN71_RS32385 - MFS transporter, at 604,989 to 606,296 _RS32385 Position (kb) 604 605Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 603.739 kb on + strandat 603.822 kb on + strandat 603.884 kb on - strandat 603.898 kb on - strandat 603.898 kb on - strandat 603.966 kb on + strandat 603.966 kb on + strandat 603.966 kb on + strandat 604.120 kb on + strand, within QEN71_RS32375at 604.120 kb on + strand, within QEN71_RS32375at 604.243 kb on + strand, within QEN71_RS32375at 604.244 kb on - strand, within QEN71_RS32375at 604.351 kb on + strand, within QEN71_RS32375at 604.351 kb on + strand, within QEN71_RS32375at 604.351 kb on + strand, within QEN71_RS32375at 604.352 kb on - strand, within QEN71_RS32375at 604.352 kb on - strand, within QEN71_RS32375at 604.352 kb on - strand, within QEN71_RS32375at 604.352 kb on - strand, within QEN71_RS32375at 604.499 kb on + strandat 604.499 kb on + strandat 604.499 kb on + strandat 604.500 kb on - strandat 604.500 kb on - strandat 604.630 kb on + strandat 604.664 kb on + strand, within QEN71_RS32380at 604.664 kb on + strand, within QEN71_RS32380at 604.664 kb on + strand, within QEN71_RS32380at 604.664 kb on + strand, within QEN71_RS32380at 604.665 kb on - strand, within QEN71_RS32380at 604.665 kb on - strand, within QEN71_RS32380at 604.665 kb on - strand, within QEN71_RS32380at 604.840 kb on + strand, within QEN71_RS32380at 604.929 kb on - strand, within QEN71_RS32380at 605.053 kb on + strandat 605.053 kb on + strandat 605.170 kb on + strand, within QEN71_RS32385at 605.170 kb on + strand, within QEN71_RS32385at 605.173 kb on + strand, within QEN71_RS32385at 605.173 kb on + strand, within QEN71_RS32385at 605.174 kb on - strand, within QEN71_RS32385at 605.174 kb on - strand, within QEN71_RS32385at 605.174 kb on - strand, within QEN71_RS32385at 605.174 kb on - strand, within QEN71_RS32385at 605.185 kb on + strand, within QEN71_RS32385at 605.302 kb on - strand, within QEN71_RS32385at 605.431 kb on + strand, within QEN71_RS32385at 605.431 kb on + strand, within QEN71_RS32385at 605.431 kb on + strand, within QEN71_RS32385at 605.432 kb on - strand, within QEN71_RS32385at 605.432 kb on - strand, within QEN71_RS32385at 605.432 kb on - strand, within QEN71_RS32385at 605.503 kb on + strand, within QEN71_RS32385at 605.504 kb on - strand, within QEN71_RS32385at 605.509 kb on + strand, within QEN71_RS32385at 605.509 kb on + strand, within QEN71_RS32385at 605.510 kb on - strand, within QEN71_RS32385at 605.738 kb on + strand, within QEN71_RS32385at 605.738 kb on + strand, within QEN71_RS32385at 605.738 kb on + strand, within QEN71_RS32385at 605.739 kb on - strand, within QEN71_RS32385at 605.740 kb on + strand, within QEN71_RS32385at 605.740 kb on + strand, within QEN71_RS32385at 605.740 kb on + strand, within QEN71_RS32385at 605.741 kb on - strand, within QEN71_RS32385at 605.741 kb on - strand, within QEN71_RS32385at 605.741 kb on - strand, within QEN71_RS32385at 605.741 kb on - strand, within QEN71_RS32385at 605.741 kb on - strand, within QEN71_RS32385at 605.791 kb on + strand, within QEN71_RS32385at 605.792 kb on - strand, within QEN71_RS32385at 605.792 kb on - strand, within QEN71_RS32385at 605.842 kb on + strand, within QEN71_RS32385at 605.843 kb on - strand, within QEN71_RS32385

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth
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603,739 + -0.7
603,822 + -1.5
603,884 - -0.4
603,898 - -0.2
603,898 - -0.1
603,966 + +1.3
603,966 + +0.0
603,966 + +0.2
604,120 + QEN71_RS32375 0.21 +0.9
604,120 + QEN71_RS32375 0.21 -0.4
604,243 + QEN71_RS32375 0.49 -0.5
604,244 - QEN71_RS32375 0.49 -1.3
604,351 + QEN71_RS32375 0.72 +0.3
604,351 + QEN71_RS32375 0.72 +0.4
604,351 + QEN71_RS32375 0.72 +0.1
604,352 - QEN71_RS32375 0.73 +0.6
604,352 - QEN71_RS32375 0.73 -0.1
604,352 - QEN71_RS32375 0.73 +0.2
604,352 - QEN71_RS32375 0.73 -0.4
604,499 + -0.2
604,499 + -0.1
604,499 + -0.4
604,500 - -0.2
604,500 - -1.2
604,630 + +1.8
604,664 + QEN71_RS32380 0.14 -2.1
604,664 + QEN71_RS32380 0.14 +0.5
604,664 + QEN71_RS32380 0.14 +0.9
604,664 + QEN71_RS32380 0.14 -0.2
604,665 - QEN71_RS32380 0.14 -0.2
604,665 - QEN71_RS32380 0.14 +0.4
604,665 - QEN71_RS32380 0.14 +0.0
604,840 + QEN71_RS32380 0.60 -1.7
604,929 - QEN71_RS32380 0.83 -1.1
605,053 + -0.5
605,053 + -1.7
605,170 + QEN71_RS32385 0.14 +1.1
605,170 + QEN71_RS32385 0.14 +0.6
605,173 + QEN71_RS32385 0.14 -1.0
605,173 + QEN71_RS32385 0.14 +0.0
605,174 - QEN71_RS32385 0.14 -1.4
605,174 - QEN71_RS32385 0.14 +0.6
605,174 - QEN71_RS32385 0.14 -0.1
605,174 - QEN71_RS32385 0.14 +0.3
605,185 + QEN71_RS32385 0.15 -1.0
605,302 - QEN71_RS32385 0.24 -3.6
605,431 + QEN71_RS32385 0.34 +1.1
605,431 + QEN71_RS32385 0.34 -0.0
605,431 + QEN71_RS32385 0.34 -1.0
605,432 - QEN71_RS32385 0.34 -0.9
605,432 - QEN71_RS32385 0.34 -1.0
605,432 - QEN71_RS32385 0.34 -0.4
605,503 + QEN71_RS32385 0.39 -0.3
605,504 - QEN71_RS32385 0.39 -1.0
605,509 + QEN71_RS32385 0.40 +0.4
605,509 + QEN71_RS32385 0.40 -1.2
605,510 - QEN71_RS32385 0.40 +0.4
605,738 + QEN71_RS32385 0.57 -0.4
605,738 + QEN71_RS32385 0.57 +0.5
605,738 + QEN71_RS32385 0.57 -0.3
605,739 - QEN71_RS32385 0.57 +0.1
605,740 + QEN71_RS32385 0.57 -1.2
605,740 + QEN71_RS32385 0.57 -0.7
605,740 + QEN71_RS32385 0.57 +0.8
605,741 - QEN71_RS32385 0.57 -0.9
605,741 - QEN71_RS32385 0.57 +1.0
605,741 - QEN71_RS32385 0.57 +1.2
605,741 - QEN71_RS32385 0.57 +0.5
605,741 - QEN71_RS32385 0.57 -0.1
605,791 + QEN71_RS32385 0.61 +0.1
605,792 - QEN71_RS32385 0.61 -0.7
605,792 - QEN71_RS32385 0.61 -0.9
605,842 + QEN71_RS32385 0.65 -0.1
605,843 - QEN71_RS32385 0.65 -0.1

Or see this region's nucleotide sequence