Experiment: Motility_inner_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31005 and QEN71_RS31010 overlap by 22 nucleotides QEN71_RS31010 and QEN71_RS31015 are separated by 147 nucleotides QEN71_RS31015 and QEN71_RS31020 are separated by 14 nucleotides QEN71_RS31020 and QEN71_RS31025 are separated by 19 nucleotides
QEN71_RS31005: QEN71_RS31005 - hypothetical protein, at 304,884 to 305,573
_RS31005
QEN71_RS31010: QEN71_RS31010 - DUF3293 domain-containing protein, at 305,552 to 305,980
_RS31010
QEN71_RS31015: QEN71_RS31015 - ureidoglycolate lyase, at 306,128 to 306,973
_RS31015
QEN71_RS31020: QEN71_RS31020 - SDR family NAD(P)-dependent oxidoreductase, at 306,988 to 307,740
_RS31020
QEN71_RS31025: QEN71_RS31025 - LysR family transcriptional regulator, at 307,760 to 308,710
_RS31025
Position (kb) 306
307 Strain fitness (log2 ratio) -2
-1
0
1 at 305.152 kb on + strand, within QEN71_RS31005 at 305.153 kb on - strand, within QEN71_RS31005 at 305.153 kb on - strand, within QEN71_RS31005 at 305.153 kb on - strand, within QEN71_RS31005 at 305.155 kb on - strand, within QEN71_RS31005 at 305.155 kb on - strand, within QEN71_RS31005 at 305.172 kb on + strand, within QEN71_RS31005 at 305.185 kb on - strand, within QEN71_RS31005 at 305.215 kb on - strand, within QEN71_RS31005 at 305.271 kb on + strand, within QEN71_RS31005 at 305.271 kb on + strand, within QEN71_RS31005 at 305.271 kb on + strand, within QEN71_RS31005 at 305.274 kb on - strand, within QEN71_RS31005 at 305.291 kb on + strand, within QEN71_RS31005 at 305.347 kb on - strand, within QEN71_RS31005 at 305.616 kb on + strand, within QEN71_RS31010 at 305.661 kb on - strand, within QEN71_RS31010 at 305.923 kb on - strand, within QEN71_RS31010 at 305.923 kb on - strand, within QEN71_RS31010 at 306.365 kb on + strand, within QEN71_RS31015 at 306.536 kb on + strand, within QEN71_RS31015 at 306.536 kb on + strand, within QEN71_RS31015 at 306.536 kb on + strand, within QEN71_RS31015 at 306.576 kb on - strand, within QEN71_RS31015 at 306.608 kb on + strand, within QEN71_RS31015 at 306.896 kb on + strand at 306.971 kb on + strand at 307.456 kb on + strand, within QEN71_RS31020 at 307.456 kb on + strand, within QEN71_RS31020 at 307.456 kb on + strand, within QEN71_RS31020 at 307.457 kb on - strand, within QEN71_RS31020 at 307.594 kb on - strand, within QEN71_RS31020 at 307.594 kb on - strand, within QEN71_RS31020 at 307.600 kb on + strand, within QEN71_RS31020 at 307.601 kb on - strand, within QEN71_RS31020 at 307.735 kb on + strand at 307.736 kb on - strand at 307.777 kb on - strand at 307.924 kb on - strand, within QEN71_RS31025 at 307.924 kb on - strand, within QEN71_RS31025 at 307.927 kb on - strand, within QEN71_RS31025
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth remove 305,152 + QEN71_RS31005 0.39 +0.4 305,153 - QEN71_RS31005 0.39 +0.1 305,153 - QEN71_RS31005 0.39 -0.2 305,153 - QEN71_RS31005 0.39 +0.4 305,155 - QEN71_RS31005 0.39 -0.0 305,155 - QEN71_RS31005 0.39 +0.5 305,172 + QEN71_RS31005 0.42 +1.4 305,185 - QEN71_RS31005 0.44 +0.5 305,215 - QEN71_RS31005 0.48 -2.1 305,271 + QEN71_RS31005 0.56 -0.2 305,271 + QEN71_RS31005 0.56 -1.5 305,271 + QEN71_RS31005 0.56 -1.4 305,274 - QEN71_RS31005 0.57 -1.2 305,291 + QEN71_RS31005 0.59 +0.9 305,347 - QEN71_RS31005 0.67 -0.1 305,616 + QEN71_RS31010 0.15 -0.1 305,661 - QEN71_RS31010 0.25 -0.7 305,923 - QEN71_RS31010 0.86 -0.0 305,923 - QEN71_RS31010 0.86 +1.0 306,365 + QEN71_RS31015 0.28 -0.6 306,536 + QEN71_RS31015 0.48 -1.2 306,536 + QEN71_RS31015 0.48 +1.1 306,536 + QEN71_RS31015 0.48 -0.7 306,576 - QEN71_RS31015 0.53 +0.6 306,608 + QEN71_RS31015 0.57 -0.4 306,896 + -0.2 306,971 + +0.4 307,456 + QEN71_RS31020 0.62 +0.4 307,456 + QEN71_RS31020 0.62 +1.2 307,456 + QEN71_RS31020 0.62 -0.2 307,457 - QEN71_RS31020 0.62 -0.6 307,594 - QEN71_RS31020 0.80 -0.3 307,594 - QEN71_RS31020 0.80 +0.8 307,600 + QEN71_RS31020 0.81 -0.8 307,601 - QEN71_RS31020 0.81 +0.8 307,735 + -0.3 307,736 - -1.0 307,777 - +0.3 307,924 - QEN71_RS31025 0.17 -0.9 307,924 - QEN71_RS31025 0.17 -0.3 307,927 - QEN71_RS31025 0.18 +0.2
Or see this region's nucleotide sequence