Experiment: Motility_inner_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS29980 and QEN71_RS29985 are separated by 186 nucleotides QEN71_RS29985 and QEN71_RS29990 are separated by 91 nucleotides QEN71_RS29990 and QEN71_RS29995 overlap by 4 nucleotides
QEN71_RS29980: QEN71_RS29980 - Gfo/Idh/MocA family oxidoreductase, at 71,887 to 72,924
_RS29980
QEN71_RS29985: QEN71_RS29985 - ABC transporter substrate-binding protein, at 73,111 to 74,430
_RS29985
QEN71_RS29990: QEN71_RS29990 - branched-chain amino acid ABC transporter permease, at 74,522 to 75,391
_RS29990
QEN71_RS29995: QEN71_RS29995 - branched-chain amino acid ABC transporter ATP-binding protein/permease, at 75,388 to 77,940
_RS29995
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1 at 72.450 kb on - strand, within QEN71_RS29980 at 72.464 kb on + strand, within QEN71_RS29980 at 72.762 kb on - strand, within QEN71_RS29980 at 72.918 kb on + strand at 73.090 kb on - strand at 73.577 kb on - strand, within QEN71_RS29985 at 73.631 kb on - strand, within QEN71_RS29985 at 73.729 kb on + strand, within QEN71_RS29985 at 73.730 kb on - strand, within QEN71_RS29985 at 73.730 kb on - strand, within QEN71_RS29985 at 73.736 kb on - strand, within QEN71_RS29985 at 73.925 kb on - strand, within QEN71_RS29985 at 74.020 kb on + strand, within QEN71_RS29985 at 74.021 kb on - strand, within QEN71_RS29985 at 74.021 kb on - strand, within QEN71_RS29985 at 74.089 kb on + strand, within QEN71_RS29985 at 74.090 kb on - strand, within QEN71_RS29985 at 74.090 kb on - strand, within QEN71_RS29985 at 74.101 kb on + strand, within QEN71_RS29985 at 74.387 kb on - strand at 74.495 kb on + strand at 74.517 kb on - strand at 74.576 kb on + strand at 74.577 kb on - strand at 74.937 kb on - strand, within QEN71_RS29990 at 75.317 kb on + strand at 75.317 kb on + strand at 75.317 kb on + strand at 75.317 kb on + strand at 75.317 kb on + strand at 75.317 kb on + strand at 75.318 kb on - strand at 75.318 kb on - strand at 75.318 kb on - strand at 75.318 kb on - strand at 75.318 kb on - strand at 75.318 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth remove 72,450 - QEN71_RS29980 0.54 -1.8 72,464 + QEN71_RS29980 0.56 -0.2 72,762 - QEN71_RS29980 0.84 -0.2 72,918 + -1.1 73,090 - +0.6 73,577 - QEN71_RS29985 0.35 +0.8 73,631 - QEN71_RS29985 0.39 -2.3 73,729 + QEN71_RS29985 0.47 -1.6 73,730 - QEN71_RS29985 0.47 -0.3 73,730 - QEN71_RS29985 0.47 -0.3 73,736 - QEN71_RS29985 0.47 +0.6 73,925 - QEN71_RS29985 0.62 -1.0 74,020 + QEN71_RS29985 0.69 -2.0 74,021 - QEN71_RS29985 0.69 -0.4 74,021 - QEN71_RS29985 0.69 +0.7 74,089 + QEN71_RS29985 0.74 -0.0 74,090 - QEN71_RS29985 0.74 +0.2 74,090 - QEN71_RS29985 0.74 +1.1 74,101 + QEN71_RS29985 0.75 -1.5 74,387 - +0.7 74,495 + +0.9 74,517 - -2.5 74,576 + +0.1 74,577 - -1.0 74,937 - QEN71_RS29990 0.48 +0.1 75,317 + +0.2 75,317 + +0.2 75,317 + -0.3 75,317 + -1.9 75,317 + -0.2 75,317 + +0.1 75,318 - +0.3 75,318 - +1.1 75,318 - +0.7 75,318 - +1.6 75,318 - -0.3 75,318 - -0.8
Or see this region's nucleotide sequence