Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS29975

Experiment: Motility_inner_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS29970 and QEN71_RS29975 are separated by 114 nucleotidesQEN71_RS29975 and QEN71_RS29980 are separated by 7 nucleotides QEN71_RS29970: QEN71_RS29970 - FAD-dependent oxidoreductase, at 69,108 to 70,859 _RS29970 QEN71_RS29975: QEN71_RS29975 - NAD(P)-dependent oxidoreductase, at 70,974 to 71,879 _RS29975 QEN71_RS29980: QEN71_RS29980 - Gfo/Idh/MocA family oxidoreductase, at 71,887 to 72,924 _RS29980 Position (kb) 70 71 72Strain fitness (log2 ratio) -2 -1 0 1at 70.004 kb on + strand, within QEN71_RS29970at 70.004 kb on + strand, within QEN71_RS29970at 70.300 kb on + strand, within QEN71_RS29970at 70.301 kb on - strand, within QEN71_RS29970at 70.301 kb on - strand, within QEN71_RS29970at 70.521 kb on - strand, within QEN71_RS29970at 71.320 kb on - strand, within QEN71_RS29975at 71.320 kb on - strand, within QEN71_RS29975at 71.320 kb on - strand, within QEN71_RS29975at 71.382 kb on + strand, within QEN71_RS29975at 71.383 kb on - strand, within QEN71_RS29975at 71.424 kb on + strand, within QEN71_RS29975at 71.551 kb on - strand, within QEN71_RS29975at 71.611 kb on - strand, within QEN71_RS29975at 71.877 kb on + strandat 71.877 kb on + strandat 71.878 kb on - strandat 72.450 kb on - strand, within QEN71_RS29980at 72.464 kb on + strand, within QEN71_RS29980at 72.762 kb on - strand, within QEN71_RS29980

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth
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70,004 + QEN71_RS29970 0.51 -1.0
70,004 + QEN71_RS29970 0.51 +0.2
70,300 + QEN71_RS29970 0.68 -0.2
70,301 - QEN71_RS29970 0.68 +0.2
70,301 - QEN71_RS29970 0.68 -0.4
70,521 - QEN71_RS29970 0.81 +1.7
71,320 - QEN71_RS29975 0.38 +0.8
71,320 - QEN71_RS29975 0.38 -0.0
71,320 - QEN71_RS29975 0.38 +0.8
71,382 + QEN71_RS29975 0.45 -0.0
71,383 - QEN71_RS29975 0.45 -0.3
71,424 + QEN71_RS29975 0.50 +0.1
71,551 - QEN71_RS29975 0.64 -0.8
71,611 - QEN71_RS29975 0.70 +0.6
71,877 + +0.0
71,877 + +0.3
71,878 - +1.3
72,450 - QEN71_RS29980 0.54 -1.8
72,464 + QEN71_RS29980 0.56 -0.2
72,762 - QEN71_RS29980 0.84 -0.2

Or see this region's nucleotide sequence