Experiment: Motility_inner_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS27915 and QEN71_RS27920 overlap by 4 nucleotides QEN71_RS27920 and QEN71_RS27925 are separated by 86 nucleotides QEN71_RS27925 and QEN71_RS27930 overlap by 4 nucleotides QEN71_RS27930 and QEN71_RS27935 are separated by 42 nucleotides
QEN71_RS27915: QEN71_RS27915 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 6,207,854 to 6,208,621
_RS27915
QEN71_RS27920: QEN71_RS27920 - ABC transporter ATP-binding protein, at 6,208,618 to 6,209,439
_RS27920
QEN71_RS27925: QEN71_RS27925 - thiamine phosphate synthase, at 6,209,526 to 6,210,641
_RS27925
QEN71_RS27930: QEN71_RS27930 - thiazole synthase, at 6,210,638 to 6,211,462
_RS27930
QEN71_RS27935: QEN71_RS27935 - sulfur carrier protein ThiS, at 6,211,505 to 6,211,702
_RS27935
Position (kb)
6209
6210
6211 Strain fitness (log2 ratio)
-2
-1
0
1 at 6208.793 kb on + strand, within QEN71_RS27920 at 6208.793 kb on + strand, within QEN71_RS27920 at 6208.793 kb on + strand, within QEN71_RS27920 at 6208.799 kb on + strand, within QEN71_RS27920 at 6208.799 kb on + strand, within QEN71_RS27920 at 6208.799 kb on + strand, within QEN71_RS27920 at 6208.800 kb on - strand, within QEN71_RS27920 at 6208.800 kb on - strand, within QEN71_RS27920 at 6208.800 kb on - strand, within QEN71_RS27920 at 6208.800 kb on - strand, within QEN71_RS27920 at 6208.866 kb on + strand, within QEN71_RS27920 at 6208.866 kb on + strand, within QEN71_RS27920 at 6208.867 kb on - strand, within QEN71_RS27920 at 6208.887 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.937 kb on + strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6208.938 kb on - strand, within QEN71_RS27920 at 6209.100 kb on + strand, within QEN71_RS27920 at 6209.101 kb on - strand, within QEN71_RS27920 at 6209.101 kb on - strand, within QEN71_RS27920 at 6209.198 kb on + strand, within QEN71_RS27920 at 6209.458 kb on - strand at 6209.474 kb on + strand at 6209.474 kb on + strand at 6209.475 kb on - strand at 6209.475 kb on - strand at 6209.475 kb on - strand at 6209.475 kb on - strand at 6209.476 kb on + strand at 6209.476 kb on + strand at 6209.477 kb on - strand at 6209.511 kb on - strand at 6209.547 kb on + strand at 6209.547 kb on + strand at 6209.547 kb on + strand at 6209.547 kb on + strand at 6209.548 kb on - strand at 6209.548 kb on - strand at 6209.557 kb on - strand at 6209.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth remove 6,208,793 + QEN71_RS27920 0.21 -1.5 6,208,793 + QEN71_RS27920 0.21 -0.2 6,208,793 + QEN71_RS27920 0.21 -0.2 6,208,799 + QEN71_RS27920 0.22 -2.0 6,208,799 + QEN71_RS27920 0.22 -0.2 6,208,799 + QEN71_RS27920 0.22 -1.4 6,208,800 - QEN71_RS27920 0.22 -0.2 6,208,800 - QEN71_RS27920 0.22 -0.2 6,208,800 - QEN71_RS27920 0.22 -0.8 6,208,800 - QEN71_RS27920 0.22 -0.8 6,208,866 + QEN71_RS27920 0.30 -1.9 6,208,866 + QEN71_RS27920 0.30 -0.8 6,208,867 - QEN71_RS27920 0.30 -0.5 6,208,887 + QEN71_RS27920 0.33 -2.0 6,208,937 + QEN71_RS27920 0.39 -0.2 6,208,937 + QEN71_RS27920 0.39 -1.2 6,208,937 + QEN71_RS27920 0.39 -1.4 6,208,937 + QEN71_RS27920 0.39 -1.2 6,208,937 + QEN71_RS27920 0.39 -0.2 6,208,937 + QEN71_RS27920 0.39 -1.0 6,208,937 + QEN71_RS27920 0.39 -2.3 6,208,937 + QEN71_RS27920 0.39 -0.8 6,208,937 + QEN71_RS27920 0.39 -0.2 6,208,938 - QEN71_RS27920 0.39 -1.5 6,208,938 - QEN71_RS27920 0.39 -1.5 6,208,938 - QEN71_RS27920 0.39 -0.8 6,208,938 - QEN71_RS27920 0.39 -2.3 6,208,938 - QEN71_RS27920 0.39 -0.2 6,208,938 - QEN71_RS27920 0.39 -0.5 6,208,938 - QEN71_RS27920 0.39 -1.0 6,208,938 - QEN71_RS27920 0.39 -1.4 6,208,938 - QEN71_RS27920 0.39 -1.0 6,209,100 + QEN71_RS27920 0.59 -0.5 6,209,101 - QEN71_RS27920 0.59 -1.7 6,209,101 - QEN71_RS27920 0.59 -0.2 6,209,198 + QEN71_RS27920 0.71 -1.4 6,209,458 - -0.5 6,209,474 + -2.0 6,209,474 + -1.7 6,209,475 - +0.3 6,209,475 - +0.8 6,209,475 - -0.6 6,209,475 - +0.5 6,209,476 + +0.5 6,209,476 + +0.3 6,209,477 - -1.5 6,209,511 - -0.6 6,209,547 + -0.9 6,209,547 + -0.0 6,209,547 + +0.6 6,209,547 + -0.2 6,209,548 - +0.1 6,209,548 - -0.3 6,209,557 - -0.6 6,209,568 - +0.4
Or see this region's nucleotide sequence