Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS25085

Experiment: Motility_inner_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS25075 and QEN71_RS25080 are separated by 227 nucleotidesQEN71_RS25080 and QEN71_RS25085 are separated by 133 nucleotidesQEN71_RS25085 and QEN71_RS25090 are separated by 38 nucleotidesQEN71_RS25090 and QEN71_RS25095 are separated by 122 nucleotides QEN71_RS25075: QEN71_RS25075 - ParA family protein, at 5,583,397 to 5,584,101 _RS25075 QEN71_RS25080: QEN71_RS25080 - PaaI family thioesterase, at 5,584,329 to 5,584,748 _RS25080 QEN71_RS25085: QEN71_RS25085 - tetratricopeptide repeat protein, at 5,584,882 to 5,586,552 _RS25085 QEN71_RS25090: QEN71_RS25090 - DoxX family protein, at 5,586,591 to 5,587,025 _RS25090 QEN71_RS25095: QEN71_RS25095 - cobyric acid synthase, at 5,587,148 to 5,588,602 _RS25095 Position (kb) 5584 5585 5586 5587Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5584.028 kb on + strand, within QEN71_RS25075at 5584.029 kb on - strand, within QEN71_RS25075at 5584.085 kb on - strandat 5584.085 kb on - strandat 5584.248 kb on + strandat 5584.248 kb on + strandat 5584.248 kb on + strandat 5584.249 kb on - strandat 5584.249 kb on - strandat 5584.249 kb on - strandat 5584.249 kb on - strandat 5584.249 kb on - strandat 5584.249 kb on - strandat 5584.282 kb on - strandat 5584.350 kb on + strandat 5584.350 kb on + strandat 5584.350 kb on + strandat 5584.350 kb on + strandat 5584.351 kb on - strandat 5584.485 kb on + strand, within QEN71_RS25080at 5584.588 kb on + strand, within QEN71_RS25080at 5584.588 kb on + strand, within QEN71_RS25080at 5584.589 kb on - strand, within QEN71_RS25080at 5584.744 kb on - strandat 5584.744 kb on - strandat 5584.744 kb on - strandat 5584.744 kb on - strandat 5584.791 kb on - strandat 5584.829 kb on + strandat 5584.830 kb on - strandat 5584.830 kb on - strandat 5585.021 kb on + strandat 5585.021 kb on + strandat 5585.021 kb on + strandat 5585.022 kb on - strandat 5585.022 kb on - strandat 5585.039 kb on + strandat 5585.040 kb on - strandat 5585.209 kb on + strand, within QEN71_RS25085at 5585.209 kb on + strand, within QEN71_RS25085at 5585.209 kb on + strand, within QEN71_RS25085at 5585.209 kb on + strand, within QEN71_RS25085at 5585.209 kb on + strand, within QEN71_RS25085at 5585.209 kb on + strand, within QEN71_RS25085at 5585.210 kb on - strand, within QEN71_RS25085at 5585.210 kb on - strand, within QEN71_RS25085at 5585.210 kb on - strand, within QEN71_RS25085at 5585.210 kb on - strand, within QEN71_RS25085at 5585.264 kb on - strand, within QEN71_RS25085at 5585.395 kb on + strand, within QEN71_RS25085at 5585.395 kb on + strand, within QEN71_RS25085at 5585.395 kb on + strand, within QEN71_RS25085at 5585.395 kb on + strand, within QEN71_RS25085at 5585.395 kb on + strand, within QEN71_RS25085at 5585.395 kb on + strand, within QEN71_RS25085at 5585.395 kb on + strand, within QEN71_RS25085at 5585.395 kb on + strand, within QEN71_RS25085at 5585.395 kb on + strand, within QEN71_RS25085at 5585.395 kb on + strand, within QEN71_RS25085at 5585.396 kb on - strand, within QEN71_RS25085at 5585.396 kb on - strand, within QEN71_RS25085at 5585.396 kb on - strand, within QEN71_RS25085at 5585.396 kb on - strand, within QEN71_RS25085at 5585.396 kb on - strand, within QEN71_RS25085at 5585.396 kb on - strand, within QEN71_RS25085at 5585.396 kb on - strand, within QEN71_RS25085at 5585.396 kb on - strand, within QEN71_RS25085at 5585.396 kb on - strand, within QEN71_RS25085at 5585.396 kb on - strand, within QEN71_RS25085at 5585.398 kb on - strand, within QEN71_RS25085at 5585.398 kb on - strand, within QEN71_RS25085at 5585.398 kb on - strand, within QEN71_RS25085at 5585.398 kb on - strand, within QEN71_RS25085at 5585.410 kb on + strand, within QEN71_RS25085at 5585.410 kb on + strand, within QEN71_RS25085at 5585.548 kb on + strand, within QEN71_RS25085at 5585.569 kb on + strand, within QEN71_RS25085at 5585.569 kb on + strand, within QEN71_RS25085at 5585.570 kb on - strand, within QEN71_RS25085at 5585.570 kb on - strand, within QEN71_RS25085at 5585.819 kb on - strand, within QEN71_RS25085at 5586.025 kb on + strand, within QEN71_RS25085at 5586.025 kb on + strand, within QEN71_RS25085at 5586.025 kb on + strand, within QEN71_RS25085at 5586.025 kb on + strand, within QEN71_RS25085at 5586.025 kb on + strand, within QEN71_RS25085at 5586.025 kb on + strand, within QEN71_RS25085at 5586.025 kb on + strand, within QEN71_RS25085at 5586.444 kb on + strandat 5586.444 kb on + strandat 5586.444 kb on + strandat 5586.444 kb on + strandat 5586.445 kb on - strandat 5586.445 kb on - strandat 5586.455 kb on - strandat 5586.955 kb on + strand, within QEN71_RS25090at 5586.955 kb on + strand, within QEN71_RS25090at 5586.955 kb on + strand, within QEN71_RS25090at 5586.955 kb on + strand, within QEN71_RS25090at 5586.955 kb on + strand, within QEN71_RS25090at 5586.955 kb on + strand, within QEN71_RS25090at 5586.955 kb on + strand, within QEN71_RS25090at 5586.955 kb on + strand, within QEN71_RS25090at 5586.955 kb on + strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5586.956 kb on - strand, within QEN71_RS25090at 5587.124 kb on - strandat 5587.124 kb on - strandat 5587.128 kb on + strandat 5587.323 kb on + strand, within QEN71_RS25095at 5587.323 kb on + strand, within QEN71_RS25095at 5587.323 kb on + strand, within QEN71_RS25095at 5587.323 kb on + strand, within QEN71_RS25095at 5587.324 kb on - strand, within QEN71_RS25095at 5587.324 kb on - strand, within QEN71_RS25095at 5587.324 kb on - strand, within QEN71_RS25095at 5587.324 kb on - strand, within QEN71_RS25095at 5587.324 kb on - strand, within QEN71_RS25095at 5587.324 kb on - strand, within QEN71_RS25095at 5587.324 kb on - strand, within QEN71_RS25095at 5587.324 kb on - strand, within QEN71_RS25095at 5587.324 kb on - strand, within QEN71_RS25095at 5587.490 kb on + strand, within QEN71_RS25095

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth
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5,584,028 + QEN71_RS25075 0.90 -0.6
5,584,029 - QEN71_RS25075 0.90 -0.4
5,584,085 - +1.1
5,584,085 - +0.0
5,584,248 + +0.7
5,584,248 + -0.6
5,584,248 + -0.4
5,584,249 - -0.8
5,584,249 - -1.1
5,584,249 - -1.6
5,584,249 - -0.9
5,584,249 - -1.0
5,584,249 - +0.2
5,584,282 - +0.9
5,584,350 + -2.0
5,584,350 + +0.1
5,584,350 + +0.8
5,584,350 + -0.1
5,584,351 - -0.1
5,584,485 + QEN71_RS25080 0.37 -1.4
5,584,588 + QEN71_RS25080 0.62 -0.7
5,584,588 + QEN71_RS25080 0.62 +0.3
5,584,589 - QEN71_RS25080 0.62 -0.2
5,584,744 - +1.5
5,584,744 - -0.2
5,584,744 - -1.4
5,584,744 - -1.8
5,584,791 - -1.4
5,584,829 + -1.9
5,584,830 - -1.6
5,584,830 - -0.5
5,585,021 + +1.1
5,585,021 + -0.8
5,585,021 + -1.9
5,585,022 - -0.2
5,585,022 - -0.0
5,585,039 + +0.3
5,585,040 - -1.0
5,585,209 + QEN71_RS25085 0.20 -1.4
5,585,209 + QEN71_RS25085 0.20 -0.4
5,585,209 + QEN71_RS25085 0.20 -0.4
5,585,209 + QEN71_RS25085 0.20 -0.8
5,585,209 + QEN71_RS25085 0.20 -1.2
5,585,209 + QEN71_RS25085 0.20 -0.2
5,585,210 - QEN71_RS25085 0.20 +0.1
5,585,210 - QEN71_RS25085 0.20 -1.9
5,585,210 - QEN71_RS25085 0.20 -1.4
5,585,210 - QEN71_RS25085 0.20 -0.5
5,585,264 - QEN71_RS25085 0.23 -0.9
5,585,395 + QEN71_RS25085 0.31 -0.2
5,585,395 + QEN71_RS25085 0.31 -0.1
5,585,395 + QEN71_RS25085 0.31 -0.3
5,585,395 + QEN71_RS25085 0.31 -0.3
5,585,395 + QEN71_RS25085 0.31 -1.3
5,585,395 + QEN71_RS25085 0.31 -0.2
5,585,395 + QEN71_RS25085 0.31 +0.3
5,585,395 + QEN71_RS25085 0.31 -0.6
5,585,395 + QEN71_RS25085 0.31 +0.1
5,585,395 + QEN71_RS25085 0.31 +0.4
5,585,396 - QEN71_RS25085 0.31 +0.1
5,585,396 - QEN71_RS25085 0.31 -0.5
5,585,396 - QEN71_RS25085 0.31 -1.0
5,585,396 - QEN71_RS25085 0.31 +0.1
5,585,396 - QEN71_RS25085 0.31 +0.2
5,585,396 - QEN71_RS25085 0.31 -0.8
5,585,396 - QEN71_RS25085 0.31 +0.8
5,585,396 - QEN71_RS25085 0.31 +1.0
5,585,396 - QEN71_RS25085 0.31 +0.1
5,585,396 - QEN71_RS25085 0.31 +0.5
5,585,398 - QEN71_RS25085 0.31 -1.0
5,585,398 - QEN71_RS25085 0.31 -2.8
5,585,398 - QEN71_RS25085 0.31 -1.1
5,585,398 - QEN71_RS25085 0.31 -1.0
5,585,410 + QEN71_RS25085 0.32 +1.6
5,585,410 + QEN71_RS25085 0.32 -0.0
5,585,548 + QEN71_RS25085 0.40 -0.5
5,585,569 + QEN71_RS25085 0.41 -0.2
5,585,569 + QEN71_RS25085 0.41 -0.2
5,585,570 - QEN71_RS25085 0.41 -1.2
5,585,570 - QEN71_RS25085 0.41 +0.7
5,585,819 - QEN71_RS25085 0.56 -0.6
5,586,025 + QEN71_RS25085 0.68 +1.5
5,586,025 + QEN71_RS25085 0.68 +0.7
5,586,025 + QEN71_RS25085 0.68 -0.2
5,586,025 + QEN71_RS25085 0.68 +0.1
5,586,025 + QEN71_RS25085 0.68 -0.3
5,586,025 + QEN71_RS25085 0.68 -0.0
5,586,025 + QEN71_RS25085 0.68 -0.6
5,586,444 + +0.5
5,586,444 + +0.3
5,586,444 + -1.2
5,586,444 + +0.3
5,586,445 - -0.0
5,586,445 - -0.5
5,586,455 - +2.1
5,586,955 + QEN71_RS25090 0.84 +0.5
5,586,955 + QEN71_RS25090 0.84 -0.3
5,586,955 + QEN71_RS25090 0.84 -0.5
5,586,955 + QEN71_RS25090 0.84 +1.0
5,586,955 + QEN71_RS25090 0.84 +0.6
5,586,955 + QEN71_RS25090 0.84 -0.2
5,586,955 + QEN71_RS25090 0.84 -1.0
5,586,955 + QEN71_RS25090 0.84 +0.4
5,586,955 + QEN71_RS25090 0.84 +0.7
5,586,956 - QEN71_RS25090 0.84 -0.4
5,586,956 - QEN71_RS25090 0.84 -0.6
5,586,956 - QEN71_RS25090 0.84 +0.1
5,586,956 - QEN71_RS25090 0.84 +0.2
5,586,956 - QEN71_RS25090 0.84 +0.1
5,586,956 - QEN71_RS25090 0.84 +0.0
5,586,956 - QEN71_RS25090 0.84 +0.8
5,586,956 - QEN71_RS25090 0.84 +0.3
5,586,956 - QEN71_RS25090 0.84 -1.1
5,586,956 - QEN71_RS25090 0.84 +1.2
5,586,956 - QEN71_RS25090 0.84 +1.6
5,586,956 - QEN71_RS25090 0.84 -1.1
5,586,956 - QEN71_RS25090 0.84 -0.8
5,586,956 - QEN71_RS25090 0.84 -0.1
5,586,956 - QEN71_RS25090 0.84 -2.6
5,586,956 - QEN71_RS25090 0.84 -1.2
5,586,956 - QEN71_RS25090 0.84 +0.5
5,586,956 - QEN71_RS25090 0.84 +0.6
5,587,124 - -0.3
5,587,124 - -1.0
5,587,128 + +0.6
5,587,323 + QEN71_RS25095 0.12 -0.1
5,587,323 + QEN71_RS25095 0.12 -0.4
5,587,323 + QEN71_RS25095 0.12 -1.4
5,587,323 + QEN71_RS25095 0.12 -0.1
5,587,324 - QEN71_RS25095 0.12 +0.0
5,587,324 - QEN71_RS25095 0.12 -0.2
5,587,324 - QEN71_RS25095 0.12 -0.1
5,587,324 - QEN71_RS25095 0.12 -0.5
5,587,324 - QEN71_RS25095 0.12 -0.1
5,587,324 - QEN71_RS25095 0.12 -0.3
5,587,324 - QEN71_RS25095 0.12 -1.0
5,587,324 - QEN71_RS25095 0.12 -0.5
5,587,324 - QEN71_RS25095 0.12 +0.9
5,587,490 + QEN71_RS25095 0.24 -1.7

Or see this region's nucleotide sequence