Experiment: Motility_inner_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS06390 and QEN71_RS06395 are separated by 183 nucleotides QEN71_RS06395 and QEN71_RS06400 overlap by 4 nucleotides QEN71_RS06400 and QEN71_RS06405 are separated by 64 nucleotides
QEN71_RS06390: QEN71_RS06390 - hypothetical protein, at 1,417,522 to 1,418,421
_RS06390
QEN71_RS06395: QEN71_RS06395 - NAD-dependent DNA ligase LigA, at 1,418,605 to 1,420,656
_RS06395
QEN71_RS06400: QEN71_RS06400 - peptide deformylase, at 1,420,653 to 1,421,186
_RS06400
QEN71_RS06405: QEN71_RS06405 - pseudouridine synthase, at 1,421,251 to 1,423,449
_RS06405
Position (kb)
1418
1419
1420
1421 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1417.670 kb on + strand, within QEN71_RS06390 at 1417.671 kb on - strand, within QEN71_RS06390 at 1417.689 kb on + strand, within QEN71_RS06390 at 1417.690 kb on - strand, within QEN71_RS06390 at 1417.706 kb on + strand, within QEN71_RS06390 at 1417.706 kb on + strand, within QEN71_RS06390 at 1417.707 kb on - strand, within QEN71_RS06390 at 1417.707 kb on - strand, within QEN71_RS06390 at 1417.830 kb on + strand, within QEN71_RS06390 at 1417.830 kb on + strand, within QEN71_RS06390 at 1417.830 kb on + strand, within QEN71_RS06390 at 1417.830 kb on + strand, within QEN71_RS06390 at 1417.830 kb on + strand, within QEN71_RS06390 at 1417.830 kb on + strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.831 kb on - strand, within QEN71_RS06390 at 1417.874 kb on + strand, within QEN71_RS06390 at 1417.874 kb on + strand, within QEN71_RS06390 at 1417.874 kb on + strand, within QEN71_RS06390 at 1417.875 kb on - strand, within QEN71_RS06390 at 1417.875 kb on - strand, within QEN71_RS06390 at 1417.912 kb on + strand, within QEN71_RS06390 at 1417.912 kb on + strand, within QEN71_RS06390 at 1417.912 kb on + strand, within QEN71_RS06390 at 1417.913 kb on - strand, within QEN71_RS06390 at 1417.913 kb on - strand, within QEN71_RS06390 at 1417.913 kb on - strand, within QEN71_RS06390 at 1418.176 kb on + strand, within QEN71_RS06390 at 1418.176 kb on + strand, within QEN71_RS06390 at 1418.176 kb on + strand, within QEN71_RS06390 at 1418.176 kb on + strand, within QEN71_RS06390 at 1418.176 kb on + strand, within QEN71_RS06390 at 1418.177 kb on - strand, within QEN71_RS06390 at 1418.177 kb on - strand, within QEN71_RS06390 at 1418.177 kb on - strand, within QEN71_RS06390 at 1418.177 kb on - strand, within QEN71_RS06390 at 1418.177 kb on - strand, within QEN71_RS06390 at 1418.177 kb on - strand, within QEN71_RS06390 at 1418.177 kb on - strand, within QEN71_RS06390 at 1418.216 kb on + strand, within QEN71_RS06390 at 1418.216 kb on + strand, within QEN71_RS06390 at 1418.217 kb on - strand, within QEN71_RS06390 at 1418.358 kb on + strand at 1418.359 kb on - strand at 1418.487 kb on + strand at 1418.487 kb on + strand at 1418.488 kb on - strand at 1418.488 kb on - strand at 1418.493 kb on + strand at 1418.493 kb on + strand at 1418.493 kb on + strand at 1418.493 kb on + strand at 1418.494 kb on - strand at 1418.494 kb on - strand at 1418.494 kb on - strand at 1418.494 kb on - strand at 1418.494 kb on - strand at 1418.494 kb on - strand at 1418.494 kb on - strand at 1418.494 kb on - strand at 1418.494 kb on - strand at 1418.565 kb on + strand at 1418.565 kb on + strand at 1418.565 kb on + strand at 1420.629 kb on + strand at 1420.629 kb on + strand at 1420.630 kb on - strand at 1420.848 kb on - strand, within QEN71_RS06400 at 1421.001 kb on + strand, within QEN71_RS06400 at 1421.103 kb on + strand, within QEN71_RS06400 at 1421.104 kb on - strand, within QEN71_RS06400 at 1421.114 kb on + strand, within QEN71_RS06400 at 1421.115 kb on - strand, within QEN71_RS06400 at 1421.115 kb on - strand, within QEN71_RS06400 at 1421.115 kb on - strand, within QEN71_RS06400 at 1421.141 kb on + strand at 1421.142 kb on - strand at 1421.252 kb on + strand at 1421.252 kb on + strand at 1421.252 kb on + strand at 1421.253 kb on - strand at 1421.276 kb on + strand at 1421.277 kb on - strand at 1421.277 kb on - strand at 1421.543 kb on + strand, within QEN71_RS06405 at 1421.544 kb on - strand, within QEN71_RS06405 at 1421.561 kb on + strand, within QEN71_RS06405 at 1421.561 kb on + strand, within QEN71_RS06405 at 1421.561 kb on + strand, within QEN71_RS06405 at 1421.562 kb on - strand, within QEN71_RS06405 at 1421.562 kb on - strand, within QEN71_RS06405 at 1421.562 kb on - strand, within QEN71_RS06405 at 1421.562 kb on - strand, within QEN71_RS06405
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth remove 1,417,670 + QEN71_RS06390 0.16 -0.1 1,417,671 - QEN71_RS06390 0.17 +1.4 1,417,689 + QEN71_RS06390 0.19 +0.5 1,417,690 - QEN71_RS06390 0.19 +0.1 1,417,706 + QEN71_RS06390 0.20 -0.2 1,417,706 + QEN71_RS06390 0.20 -0.9 1,417,707 - QEN71_RS06390 0.21 +1.1 1,417,707 - QEN71_RS06390 0.21 -0.5 1,417,830 + QEN71_RS06390 0.34 -0.2 1,417,830 + QEN71_RS06390 0.34 -0.5 1,417,830 + QEN71_RS06390 0.34 -0.3 1,417,830 + QEN71_RS06390 0.34 -0.8 1,417,830 + QEN71_RS06390 0.34 -0.1 1,417,830 + QEN71_RS06390 0.34 +1.1 1,417,831 - QEN71_RS06390 0.34 -0.6 1,417,831 - QEN71_RS06390 0.34 -0.7 1,417,831 - QEN71_RS06390 0.34 -0.9 1,417,831 - QEN71_RS06390 0.34 +0.0 1,417,831 - QEN71_RS06390 0.34 +0.8 1,417,831 - QEN71_RS06390 0.34 -0.0 1,417,831 - QEN71_RS06390 0.34 -2.8 1,417,831 - QEN71_RS06390 0.34 +0.8 1,417,831 - QEN71_RS06390 0.34 +0.9 1,417,831 - QEN71_RS06390 0.34 -0.9 1,417,831 - QEN71_RS06390 0.34 -0.2 1,417,831 - QEN71_RS06390 0.34 +1.3 1,417,831 - QEN71_RS06390 0.34 +0.2 1,417,831 - QEN71_RS06390 0.34 +1.2 1,417,831 - QEN71_RS06390 0.34 +1.0 1,417,831 - QEN71_RS06390 0.34 +0.5 1,417,831 - QEN71_RS06390 0.34 -0.4 1,417,874 + QEN71_RS06390 0.39 -0.5 1,417,874 + QEN71_RS06390 0.39 +0.0 1,417,874 + QEN71_RS06390 0.39 -0.9 1,417,875 - QEN71_RS06390 0.39 -0.1 1,417,875 - QEN71_RS06390 0.39 -0.9 1,417,912 + QEN71_RS06390 0.43 -0.4 1,417,912 + QEN71_RS06390 0.43 -0.8 1,417,912 + QEN71_RS06390 0.43 -0.2 1,417,913 - QEN71_RS06390 0.43 -0.4 1,417,913 - QEN71_RS06390 0.43 +0.0 1,417,913 - QEN71_RS06390 0.43 +0.2 1,418,176 + QEN71_RS06390 0.73 +0.0 1,418,176 + QEN71_RS06390 0.73 +0.5 1,418,176 + QEN71_RS06390 0.73 -1.7 1,418,176 + QEN71_RS06390 0.73 +0.1 1,418,176 + QEN71_RS06390 0.73 +0.5 1,418,177 - QEN71_RS06390 0.73 +0.1 1,418,177 - QEN71_RS06390 0.73 -0.4 1,418,177 - QEN71_RS06390 0.73 +0.1 1,418,177 - QEN71_RS06390 0.73 -0.1 1,418,177 - QEN71_RS06390 0.73 +0.0 1,418,177 - QEN71_RS06390 0.73 +1.0 1,418,177 - QEN71_RS06390 0.73 +0.2 1,418,216 + QEN71_RS06390 0.77 +1.0 1,418,216 + QEN71_RS06390 0.77 -0.6 1,418,217 - QEN71_RS06390 0.77 +0.8 1,418,358 + -0.6 1,418,359 - -0.3 1,418,487 + +0.5 1,418,487 + +0.9 1,418,488 - +0.0 1,418,488 - -0.8 1,418,493 + -1.6 1,418,493 + +1.1 1,418,493 + -0.6 1,418,493 + -1.0 1,418,494 - +0.1 1,418,494 - +0.1 1,418,494 - +0.2 1,418,494 - -1.2 1,418,494 - -0.5 1,418,494 - -2.7 1,418,494 - +0.5 1,418,494 - +0.8 1,418,494 - -0.9 1,418,565 + -0.8 1,418,565 + -0.8 1,418,565 + -2.0 1,420,629 + -3.5 1,420,629 + +0.7 1,420,630 - -0.6 1,420,848 - QEN71_RS06400 0.37 -0.5 1,421,001 + QEN71_RS06400 0.65 +0.8 1,421,103 + QEN71_RS06400 0.84 +0.1 1,421,104 - QEN71_RS06400 0.84 -0.0 1,421,114 + QEN71_RS06400 0.86 -1.1 1,421,115 - QEN71_RS06400 0.87 +0.5 1,421,115 - QEN71_RS06400 0.87 -0.8 1,421,115 - QEN71_RS06400 0.87 -0.1 1,421,141 + -0.9 1,421,142 - -0.8 1,421,252 + +0.1 1,421,252 + -0.5 1,421,252 + -0.8 1,421,253 - -0.4 1,421,276 + -1.0 1,421,277 - -0.6 1,421,277 - +1.4 1,421,543 + QEN71_RS06405 0.13 -0.1 1,421,544 - QEN71_RS06405 0.13 +0.5 1,421,561 + QEN71_RS06405 0.14 -0.2 1,421,561 + QEN71_RS06405 0.14 -0.5 1,421,561 + QEN71_RS06405 0.14 -0.8 1,421,562 - QEN71_RS06405 0.14 +0.3 1,421,562 - QEN71_RS06405 0.14 +0.4 1,421,562 - QEN71_RS06405 0.14 -0.9 1,421,562 - QEN71_RS06405 0.14 +0.5
Or see this region's nucleotide sequence