Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05380

Experiment: Motility_inner_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS05375 and QEN71_RS05380 are separated by 25 nucleotidesQEN71_RS05380 and QEN71_RS05385 are separated by 396 nucleotides QEN71_RS05375: QEN71_RS05375 - benzoyl-CoA 2,3-epoxidase subunit BoxA, at 1,186,930 to 1,188,180 _RS05375 QEN71_RS05380: QEN71_RS05380 - TetR/AcrR family transcriptional regulator, at 1,188,206 to 1,188,910 _RS05380 QEN71_RS05385: QEN71_RS05385 - Zn-dependent hydrolase, at 1,189,307 to 1,190,584 _RS05385 Position (kb) 1188 1189Strain fitness (log2 ratio) -2 -1 0 1 2at 1187.265 kb on + strand, within QEN71_RS05375at 1187.265 kb on + strand, within QEN71_RS05375at 1187.266 kb on - strand, within QEN71_RS05375at 1187.341 kb on + strand, within QEN71_RS05375at 1187.341 kb on + strand, within QEN71_RS05375at 1187.342 kb on - strand, within QEN71_RS05375at 1187.342 kb on - strand, within QEN71_RS05375at 1187.353 kb on + strand, within QEN71_RS05375at 1187.354 kb on - strand, within QEN71_RS05375at 1187.545 kb on + strand, within QEN71_RS05375at 1187.584 kb on + strand, within QEN71_RS05375at 1187.627 kb on - strand, within QEN71_RS05375at 1187.627 kb on - strand, within QEN71_RS05375at 1188.037 kb on + strand, within QEN71_RS05375at 1188.037 kb on + strand, within QEN71_RS05375at 1188.037 kb on + strand, within QEN71_RS05375at 1188.037 kb on + strand, within QEN71_RS05375at 1188.037 kb on + strand, within QEN71_RS05375at 1188.037 kb on + strand, within QEN71_RS05375at 1188.038 kb on - strand, within QEN71_RS05375at 1188.038 kb on - strand, within QEN71_RS05375at 1188.038 kb on - strand, within QEN71_RS05375at 1188.038 kb on - strand, within QEN71_RS05375at 1188.038 kb on - strand, within QEN71_RS05375at 1188.039 kb on + strand, within QEN71_RS05375at 1188.039 kb on + strand, within QEN71_RS05375at 1188.043 kb on + strand, within QEN71_RS05375at 1188.043 kb on + strand, within QEN71_RS05375at 1188.043 kb on + strand, within QEN71_RS05375at 1188.044 kb on - strand, within QEN71_RS05375at 1188.044 kb on - strand, within QEN71_RS05375at 1188.044 kb on - strand, within QEN71_RS05375at 1188.372 kb on + strand, within QEN71_RS05380at 1188.372 kb on + strand, within QEN71_RS05380at 1188.372 kb on + strand, within QEN71_RS05380at 1188.573 kb on + strand, within QEN71_RS05380at 1188.573 kb on + strand, within QEN71_RS05380at 1188.667 kb on - strand, within QEN71_RS05380at 1188.690 kb on + strand, within QEN71_RS05380at 1188.691 kb on - strand, within QEN71_RS05380at 1188.693 kb on + strand, within QEN71_RS05380at 1188.693 kb on + strand, within QEN71_RS05380at 1188.693 kb on + strand, within QEN71_RS05380at 1188.693 kb on + strand, within QEN71_RS05380at 1188.694 kb on - strand, within QEN71_RS05380at 1188.954 kb on - strandat 1189.004 kb on + strandat 1189.004 kb on + strandat 1189.004 kb on + strandat 1189.005 kb on - strandat 1189.059 kb on + strandat 1189.103 kb on + strandat 1189.103 kb on + strandat 1189.103 kb on + strandat 1189.345 kb on + strandat 1189.346 kb on - strandat 1189.631 kb on + strand, within QEN71_RS05385at 1189.631 kb on + strand, within QEN71_RS05385at 1189.632 kb on - strand, within QEN71_RS05385at 1189.632 kb on - strand, within QEN71_RS05385at 1189.794 kb on - strand, within QEN71_RS05385

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth
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1,187,265 + QEN71_RS05375 0.27 -0.4
1,187,265 + QEN71_RS05375 0.27 +1.8
1,187,266 - QEN71_RS05375 0.27 +0.1
1,187,341 + QEN71_RS05375 0.33 +1.1
1,187,341 + QEN71_RS05375 0.33 -0.1
1,187,342 - QEN71_RS05375 0.33 +0.7
1,187,342 - QEN71_RS05375 0.33 -0.1
1,187,353 + QEN71_RS05375 0.34 -1.9
1,187,354 - QEN71_RS05375 0.34 +0.0
1,187,545 + QEN71_RS05375 0.49 +0.0
1,187,584 + QEN71_RS05375 0.52 -0.2
1,187,627 - QEN71_RS05375 0.56 +0.4
1,187,627 - QEN71_RS05375 0.56 +1.0
1,188,037 + QEN71_RS05375 0.88 +1.3
1,188,037 + QEN71_RS05375 0.88 +0.8
1,188,037 + QEN71_RS05375 0.88 -0.1
1,188,037 + QEN71_RS05375 0.88 -0.2
1,188,037 + QEN71_RS05375 0.88 +0.7
1,188,037 + QEN71_RS05375 0.88 -0.5
1,188,038 - QEN71_RS05375 0.89 -0.4
1,188,038 - QEN71_RS05375 0.89 +0.3
1,188,038 - QEN71_RS05375 0.89 -0.7
1,188,038 - QEN71_RS05375 0.89 -0.0
1,188,038 - QEN71_RS05375 0.89 +0.1
1,188,039 + QEN71_RS05375 0.89 +0.1
1,188,039 + QEN71_RS05375 0.89 +1.4
1,188,043 + QEN71_RS05375 0.89 -2.3
1,188,043 + QEN71_RS05375 0.89 -0.3
1,188,043 + QEN71_RS05375 0.89 -2.6
1,188,044 - QEN71_RS05375 0.89 +0.5
1,188,044 - QEN71_RS05375 0.89 +0.6
1,188,044 - QEN71_RS05375 0.89 -1.6
1,188,372 + QEN71_RS05380 0.24 -1.0
1,188,372 + QEN71_RS05380 0.24 +2.3
1,188,372 + QEN71_RS05380 0.24 -0.6
1,188,573 + QEN71_RS05380 0.52 +0.6
1,188,573 + QEN71_RS05380 0.52 -1.7
1,188,667 - QEN71_RS05380 0.65 -0.3
1,188,690 + QEN71_RS05380 0.69 -0.4
1,188,691 - QEN71_RS05380 0.69 -0.3
1,188,693 + QEN71_RS05380 0.69 +0.3
1,188,693 + QEN71_RS05380 0.69 -0.8
1,188,693 + QEN71_RS05380 0.69 -0.7
1,188,693 + QEN71_RS05380 0.69 +0.1
1,188,694 - QEN71_RS05380 0.69 +0.5
1,188,954 - +0.3
1,189,004 + +0.2
1,189,004 + +1.3
1,189,004 + +0.1
1,189,005 - -0.4
1,189,059 + +0.6
1,189,103 + +0.6
1,189,103 + -0.3
1,189,103 + -0.6
1,189,345 + -0.5
1,189,346 - +0.4
1,189,631 + QEN71_RS05385 0.25 -0.5
1,189,631 + QEN71_RS05385 0.25 -0.7
1,189,632 - QEN71_RS05385 0.25 +0.8
1,189,632 - QEN71_RS05385 0.25 +0.1
1,189,794 - QEN71_RS05385 0.38 -0.7

Or see this region's nucleotide sequence