Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04300

Experiment: Motility_inner_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS04290 and QEN71_RS04295 are separated by 6 nucleotidesQEN71_RS04295 and QEN71_RS04300 are separated by 96 nucleotidesQEN71_RS04300 and QEN71_RS04305 are separated by 29 nucleotidesQEN71_RS04305 and QEN71_RS04310 overlap by 4 nucleotides QEN71_RS04290: QEN71_RS04290 - peptidase C39, at 945,685 to 946,491 _RS04290 QEN71_RS04295: QEN71_RS04295 - C39 family peptidase, at 946,498 to 947,217 _RS04295 QEN71_RS04300: QEN71_RS04300 - hypothetical protein, at 947,314 to 948,711 _RS04300 QEN71_RS04305: QEN71_RS04305 - hypothetical protein, at 948,741 to 949,352 _RS04305 QEN71_RS04310: QEN71_RS04310 - hypothetical protein, at 949,349 to 949,861 _RS04310 Position (kb) 947 948 949Strain fitness (log2 ratio) -2 -1 0 1 2at 946.457 kb on + strandat 946.457 kb on + strandat 946.457 kb on + strandat 946.457 kb on + strandat 946.457 kb on + strandat 946.458 kb on - strandat 946.458 kb on - strandat 946.527 kb on - strandat 946.769 kb on + strand, within QEN71_RS04295at 946.769 kb on + strand, within QEN71_RS04295at 946.769 kb on + strand, within QEN71_RS04295at 946.814 kb on + strand, within QEN71_RS04295at 946.814 kb on + strand, within QEN71_RS04295at 946.815 kb on - strand, within QEN71_RS04295at 946.815 kb on - strand, within QEN71_RS04295at 946.815 kb on - strand, within QEN71_RS04295at 946.815 kb on - strand, within QEN71_RS04295at 946.815 kb on - strand, within QEN71_RS04295at 946.815 kb on - strand, within QEN71_RS04295at 946.815 kb on - strand, within QEN71_RS04295at 946.815 kb on - strand, within QEN71_RS04295at 946.815 kb on - strand, within QEN71_RS04295at 947.021 kb on + strand, within QEN71_RS04295at 947.086 kb on - strand, within QEN71_RS04295at 947.086 kb on - strand, within QEN71_RS04295at 947.094 kb on + strand, within QEN71_RS04295at 947.095 kb on - strand, within QEN71_RS04295at 947.095 kb on - strand, within QEN71_RS04295at 947.107 kb on - strand, within QEN71_RS04295at 947.304 kb on - strandat 947.612 kb on + strand, within QEN71_RS04300at 947.613 kb on - strand, within QEN71_RS04300at 947.884 kb on + strand, within QEN71_RS04300at 947.885 kb on + strand, within QEN71_RS04300at 947.885 kb on + strand, within QEN71_RS04300at 947.885 kb on + strand, within QEN71_RS04300at 947.886 kb on - strand, within QEN71_RS04300at 947.886 kb on - strand, within QEN71_RS04300at 947.886 kb on - strand, within QEN71_RS04300at 947.973 kb on - strand, within QEN71_RS04300at 947.993 kb on + strand, within QEN71_RS04300at 947.994 kb on - strand, within QEN71_RS04300at 948.002 kb on + strand, within QEN71_RS04300at 948.002 kb on + strand, within QEN71_RS04300at 948.002 kb on + strand, within QEN71_RS04300at 948.098 kb on + strand, within QEN71_RS04300at 948.098 kb on + strand, within QEN71_RS04300at 948.098 kb on + strand, within QEN71_RS04300at 948.098 kb on + strand, within QEN71_RS04300at 948.099 kb on - strand, within QEN71_RS04300at 948.114 kb on - strand, within QEN71_RS04300at 948.176 kb on + strand, within QEN71_RS04300at 948.176 kb on + strand, within QEN71_RS04300at 948.177 kb on - strand, within QEN71_RS04300at 948.177 kb on - strand, within QEN71_RS04300at 948.177 kb on - strand, within QEN71_RS04300at 948.177 kb on - strand, within QEN71_RS04300at 948.177 kb on - strand, within QEN71_RS04300at 948.177 kb on - strand, within QEN71_RS04300at 948.177 kb on - strand, within QEN71_RS04300at 948.194 kb on + strand, within QEN71_RS04300at 948.194 kb on + strand, within QEN71_RS04300at 948.195 kb on - strand, within QEN71_RS04300at 948.195 kb on - strand, within QEN71_RS04300at 948.332 kb on + strand, within QEN71_RS04300at 948.332 kb on + strand, within QEN71_RS04300at 948.332 kb on + strand, within QEN71_RS04300at 948.332 kb on + strand, within QEN71_RS04300at 948.332 kb on + strand, within QEN71_RS04300at 948.333 kb on - strand, within QEN71_RS04300at 948.333 kb on - strand, within QEN71_RS04300at 948.333 kb on - strand, within QEN71_RS04300at 948.338 kb on + strand, within QEN71_RS04300at 948.338 kb on + strand, within QEN71_RS04300at 948.356 kb on + strand, within QEN71_RS04300at 948.357 kb on - strand, within QEN71_RS04300at 948.372 kb on - strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.437 kb on + strand, within QEN71_RS04300at 948.438 kb on - strand, within QEN71_RS04300at 948.438 kb on - strand, within QEN71_RS04300at 948.438 kb on - strand, within QEN71_RS04300at 948.438 kb on - strand, within QEN71_RS04300at 948.438 kb on - strand, within QEN71_RS04300at 948.438 kb on - strand, within QEN71_RS04300at 948.476 kb on + strand, within QEN71_RS04300at 948.476 kb on + strand, within QEN71_RS04300at 948.476 kb on + strand, within QEN71_RS04300at 948.476 kb on + strand, within QEN71_RS04300at 948.476 kb on + strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.477 kb on - strand, within QEN71_RS04300at 948.512 kb on + strand, within QEN71_RS04300at 948.696 kb on + strandat 948.696 kb on + strandat 948.696 kb on + strandat 948.696 kb on + strandat 948.697 kb on - strandat 948.697 kb on - strandat 948.725 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.728 kb on + strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.729 kb on - strandat 948.742 kb on + strandat 948.794 kb on + strandat 948.795 kb on - strandat 948.930 kb on + strand, within QEN71_RS04305at 948.931 kb on - strand, within QEN71_RS04305at 949.006 kb on - strand, within QEN71_RS04305at 949.273 kb on - strand, within QEN71_RS04305

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth
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946,457 + -0.4
946,457 + -0.0
946,457 + +0.7
946,457 + +0.6
946,457 + +0.4
946,458 - -0.2
946,458 - -1.3
946,527 - -0.4
946,769 + QEN71_RS04295 0.38 -0.9
946,769 + QEN71_RS04295 0.38 -0.3
946,769 + QEN71_RS04295 0.38 +0.1
946,814 + QEN71_RS04295 0.44 -0.2
946,814 + QEN71_RS04295 0.44 +0.1
946,815 - QEN71_RS04295 0.44 +0.6
946,815 - QEN71_RS04295 0.44 -0.1
946,815 - QEN71_RS04295 0.44 +0.0
946,815 - QEN71_RS04295 0.44 +0.4
946,815 - QEN71_RS04295 0.44 +0.6
946,815 - QEN71_RS04295 0.44 +0.3
946,815 - QEN71_RS04295 0.44 -0.4
946,815 - QEN71_RS04295 0.44 -0.2
946,815 - QEN71_RS04295 0.44 -0.8
947,021 + QEN71_RS04295 0.73 +0.8
947,086 - QEN71_RS04295 0.82 +0.1
947,086 - QEN71_RS04295 0.82 +0.8
947,094 + QEN71_RS04295 0.83 -0.1
947,095 - QEN71_RS04295 0.83 -0.0
947,095 - QEN71_RS04295 0.83 +1.2
947,107 - QEN71_RS04295 0.85 +0.2
947,304 - -0.7
947,612 + QEN71_RS04300 0.21 +0.9
947,613 - QEN71_RS04300 0.21 -0.1
947,884 + QEN71_RS04300 0.41 +0.1
947,885 + QEN71_RS04300 0.41 -0.4
947,885 + QEN71_RS04300 0.41 +1.4
947,885 + QEN71_RS04300 0.41 +0.2
947,886 - QEN71_RS04300 0.41 +0.2
947,886 - QEN71_RS04300 0.41 +0.8
947,886 - QEN71_RS04300 0.41 +0.2
947,973 - QEN71_RS04300 0.47 +0.6
947,993 + QEN71_RS04300 0.49 -0.3
947,994 - QEN71_RS04300 0.49 +0.3
948,002 + QEN71_RS04300 0.49 -0.7
948,002 + QEN71_RS04300 0.49 -0.1
948,002 + QEN71_RS04300 0.49 -1.9
948,098 + QEN71_RS04300 0.56 +0.1
948,098 + QEN71_RS04300 0.56 -0.5
948,098 + QEN71_RS04300 0.56 +0.0
948,098 + QEN71_RS04300 0.56 -1.1
948,099 - QEN71_RS04300 0.56 +0.8
948,114 - QEN71_RS04300 0.57 +0.4
948,176 + QEN71_RS04300 0.62 -0.2
948,176 + QEN71_RS04300 0.62 -0.6
948,177 - QEN71_RS04300 0.62 +0.1
948,177 - QEN71_RS04300 0.62 -0.6
948,177 - QEN71_RS04300 0.62 -0.4
948,177 - QEN71_RS04300 0.62 -0.4
948,177 - QEN71_RS04300 0.62 -0.2
948,177 - QEN71_RS04300 0.62 +1.1
948,177 - QEN71_RS04300 0.62 +0.0
948,194 + QEN71_RS04300 0.63 +0.1
948,194 + QEN71_RS04300 0.63 -0.7
948,195 - QEN71_RS04300 0.63 -0.4
948,195 - QEN71_RS04300 0.63 -0.3
948,332 + QEN71_RS04300 0.73 -0.3
948,332 + QEN71_RS04300 0.73 +0.8
948,332 + QEN71_RS04300 0.73 -1.3
948,332 + QEN71_RS04300 0.73 -1.7
948,332 + QEN71_RS04300 0.73 -0.7
948,333 - QEN71_RS04300 0.73 -0.1
948,333 - QEN71_RS04300 0.73 -0.4
948,333 - QEN71_RS04300 0.73 -1.5
948,338 + QEN71_RS04300 0.73 -0.2
948,338 + QEN71_RS04300 0.73 +0.1
948,356 + QEN71_RS04300 0.75 -0.1
948,357 - QEN71_RS04300 0.75 -1.6
948,372 - QEN71_RS04300 0.76 +0.7
948,437 + QEN71_RS04300 0.80 -0.2
948,437 + QEN71_RS04300 0.80 -1.7
948,437 + QEN71_RS04300 0.80 +0.6
948,437 + QEN71_RS04300 0.80 -0.2
948,437 + QEN71_RS04300 0.80 +0.2
948,437 + QEN71_RS04300 0.80 +0.8
948,437 + QEN71_RS04300 0.80 +0.0
948,437 + QEN71_RS04300 0.80 -1.6
948,438 - QEN71_RS04300 0.80 -0.4
948,438 - QEN71_RS04300 0.80 -1.6
948,438 - QEN71_RS04300 0.80 -0.3
948,438 - QEN71_RS04300 0.80 -0.3
948,438 - QEN71_RS04300 0.80 -1.0
948,438 - QEN71_RS04300 0.80 -0.7
948,476 + QEN71_RS04300 0.83 +0.3
948,476 + QEN71_RS04300 0.83 -0.4
948,476 + QEN71_RS04300 0.83 -0.8
948,476 + QEN71_RS04300 0.83 +0.0
948,476 + QEN71_RS04300 0.83 +0.6
948,477 - QEN71_RS04300 0.83 +0.4
948,477 - QEN71_RS04300 0.83 -0.6
948,477 - QEN71_RS04300 0.83 +0.1
948,477 - QEN71_RS04300 0.83 -0.9
948,477 - QEN71_RS04300 0.83 +0.6
948,477 - QEN71_RS04300 0.83 +0.3
948,477 - QEN71_RS04300 0.83 -0.5
948,477 - QEN71_RS04300 0.83 -0.2
948,512 + QEN71_RS04300 0.86 +0.0
948,696 + +0.4
948,696 + +1.7
948,696 + +0.3
948,696 + +0.0
948,697 - +0.1
948,697 - +1.3
948,725 + -0.3
948,728 + -0.1
948,728 + +1.0
948,728 + -0.1
948,728 + -1.3
948,728 + +2.1
948,728 + -0.3
948,728 + +0.6
948,728 + -1.0
948,728 + -0.3
948,728 + -0.0
948,729 - -0.2
948,729 - -0.5
948,729 - -0.1
948,729 - -0.0
948,729 - +0.1
948,729 - +1.0
948,729 - -0.9
948,729 - +1.8
948,729 - +1.5
948,729 - -1.3
948,729 - +0.4
948,729 - +0.2
948,742 + +0.4
948,794 + -0.5
948,795 - -1.3
948,930 + QEN71_RS04305 0.31 -0.3
948,931 - QEN71_RS04305 0.31 +1.8
949,006 - QEN71_RS04305 0.43 +0.0
949,273 - QEN71_RS04305 0.87 -0.4

Or see this region's nucleotide sequence