Experiment: biofilm; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS19070 and LRK53_RS19075 overlap by 4 nucleotides LRK53_RS19075 and LRK53_RS19080 are separated by 20 nucleotides LRK53_RS19080 and LRK53_RS19085 overlap by 4 nucleotides
LRK53_RS19070: LRK53_RS19070 - hypothetical protein, at 200,904 to 201,428
_RS19070
LRK53_RS19075: LRK53_RS19075 - DUF262 domain-containing protein, at 201,425 to 202,009
_RS19075
LRK53_RS19080: LRK53_RS19080 - hypothetical protein, at 202,030 to 202,488
_RS19080
LRK53_RS19085: LRK53_RS19085 - hypothetical protein, at 202,485 to 205,382
_RS19085
Position (kb) 202
203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 201.150 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.168 kb on + strand, within LRK53_RS19070 at 201.169 kb on - strand, within LRK53_RS19070 at 201.169 kb on - strand, within LRK53_RS19070 at 201.169 kb on - strand, within LRK53_RS19070 at 201.169 kb on - strand, within LRK53_RS19070 at 201.169 kb on - strand, within LRK53_RS19070 at 201.169 kb on - strand, within LRK53_RS19070 at 201.306 kb on + strand, within LRK53_RS19070 at 201.306 kb on + strand, within LRK53_RS19070 at 201.384 kb on + strand at 201.384 kb on + strand at 201.385 kb on - strand at 201.385 kb on - strand at 201.385 kb on - strand at 201.385 kb on - strand at 201.653 kb on + strand, within LRK53_RS19075 at 201.653 kb on + strand, within LRK53_RS19075 at 201.654 kb on - strand, within LRK53_RS19075 at 201.654 kb on - strand, within LRK53_RS19075 at 201.654 kb on - strand, within LRK53_RS19075 at 201.657 kb on - strand, within LRK53_RS19075 at 201.657 kb on - strand, within LRK53_RS19075 at 201.657 kb on - strand, within LRK53_RS19075 at 201.657 kb on - strand, within LRK53_RS19075 at 201.657 kb on - strand, within LRK53_RS19075 at 201.718 kb on - strand, within LRK53_RS19075 at 201.834 kb on - strand, within LRK53_RS19075 at 201.896 kb on + strand, within LRK53_RS19075 at 201.896 kb on + strand, within LRK53_RS19075 at 201.896 kb on + strand, within LRK53_RS19075 at 201.896 kb on + strand, within LRK53_RS19075 at 201.896 kb on + strand, within LRK53_RS19075 at 201.896 kb on + strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 201.897 kb on - strand, within LRK53_RS19075 at 202.029 kb on + strand at 202.029 kb on + strand at 202.029 kb on + strand at 202.030 kb on - strand at 202.030 kb on - strand at 202.030 kb on - strand at 202.030 kb on - strand at 202.037 kb on + strand at 202.050 kb on + strand at 202.050 kb on + strand at 202.050 kb on + strand at 202.051 kb on - strand at 202.051 kb on - strand at 202.051 kb on - strand at 202.051 kb on - strand at 202.051 kb on - strand at 202.051 kb on - strand at 202.051 kb on - strand at 202.120 kb on + strand, within LRK53_RS19080 at 202.120 kb on + strand, within LRK53_RS19080 at 202.120 kb on + strand, within LRK53_RS19080 at 202.121 kb on - strand, within LRK53_RS19080 at 202.121 kb on - strand, within LRK53_RS19080 at 202.151 kb on + strand, within LRK53_RS19080 at 202.151 kb on + strand, within LRK53_RS19080 at 202.151 kb on + strand, within LRK53_RS19080 at 202.152 kb on - strand, within LRK53_RS19080 at 202.152 kb on - strand, within LRK53_RS19080 at 202.152 kb on - strand, within LRK53_RS19080 at 202.152 kb on - strand, within LRK53_RS19080 at 202.268 kb on + strand, within LRK53_RS19080 at 202.268 kb on + strand, within LRK53_RS19080 at 202.268 kb on + strand, within LRK53_RS19080 at 202.268 kb on + strand, within LRK53_RS19080 at 202.268 kb on + strand, within LRK53_RS19080 at 202.269 kb on - strand, within LRK53_RS19080 at 202.269 kb on - strand, within LRK53_RS19080 at 202.269 kb on - strand, within LRK53_RS19080 at 202.269 kb on - strand, within LRK53_RS19080 at 202.362 kb on + strand, within LRK53_RS19080 at 202.362 kb on + strand, within LRK53_RS19080 at 202.363 kb on - strand, within LRK53_RS19080 at 202.566 kb on + strand at 202.566 kb on + strand at 202.566 kb on + strand at 202.567 kb on - strand at 202.617 kb on + strand at 202.617 kb on + strand at 202.617 kb on + strand at 202.617 kb on + strand at 202.617 kb on + strand at 202.617 kb on + strand at 202.617 kb on + strand at 202.618 kb on - strand at 202.618 kb on - strand at 202.618 kb on - strand at 202.719 kb on - strand at 202.719 kb on - strand at 202.726 kb on - strand at 202.784 kb on - strand, within LRK53_RS19085 at 203.169 kb on + strand, within LRK53_RS19085 at 203.170 kb on - strand, within LRK53_RS19085 at 203.170 kb on - strand, within LRK53_RS19085 at 203.244 kb on + strand, within LRK53_RS19085 at 203.244 kb on + strand, within LRK53_RS19085 at 203.244 kb on + strand, within LRK53_RS19085 at 203.244 kb on + strand, within LRK53_RS19085 at 203.244 kb on + strand, within LRK53_RS19085 at 203.245 kb on - strand, within LRK53_RS19085 at 203.245 kb on - strand, within LRK53_RS19085 at 203.245 kb on - strand, within LRK53_RS19085 at 203.303 kb on - strand, within LRK53_RS19085 at 203.432 kb on + strand, within LRK53_RS19085 at 203.476 kb on - strand, within LRK53_RS19085
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; remove 201,150 + LRK53_RS19070 0.47 -0.2 201,168 + LRK53_RS19070 0.50 -1.2 201,168 + LRK53_RS19070 0.50 -2.5 201,168 + LRK53_RS19070 0.50 -1.0 201,168 + LRK53_RS19070 0.50 +2.5 201,168 + LRK53_RS19070 0.50 -2.1 201,168 + LRK53_RS19070 0.50 +0.6 201,168 + LRK53_RS19070 0.50 -2.2 201,168 + LRK53_RS19070 0.50 +0.8 201,168 + LRK53_RS19070 0.50 +0.0 201,169 - LRK53_RS19070 0.50 +0.0 201,169 - LRK53_RS19070 0.50 -1.3 201,169 - LRK53_RS19070 0.50 +1.6 201,169 - LRK53_RS19070 0.50 -2.3 201,169 - LRK53_RS19070 0.50 +0.5 201,169 - LRK53_RS19070 0.50 -0.2 201,306 + LRK53_RS19070 0.77 -1.6 201,306 + LRK53_RS19070 0.77 -1.0 201,384 + -1.4 201,384 + -1.2 201,385 - +1.2 201,385 - -0.7 201,385 - -1.9 201,385 - -0.2 201,653 + LRK53_RS19075 0.39 -1.7 201,653 + LRK53_RS19075 0.39 -2.6 201,654 - LRK53_RS19075 0.39 -0.9 201,654 - LRK53_RS19075 0.39 -0.4 201,654 - LRK53_RS19075 0.39 -0.1 201,657 - LRK53_RS19075 0.40 -3.0 201,657 - LRK53_RS19075 0.40 -0.6 201,657 - LRK53_RS19075 0.40 +0.0 201,657 - LRK53_RS19075 0.40 -1.2 201,657 - LRK53_RS19075 0.40 -1.4 201,718 - LRK53_RS19075 0.50 -0.6 201,834 - LRK53_RS19075 0.70 +0.2 201,896 + LRK53_RS19075 0.81 -0.8 201,896 + LRK53_RS19075 0.81 -0.5 201,896 + LRK53_RS19075 0.81 -0.4 201,896 + LRK53_RS19075 0.81 -0.3 201,896 + LRK53_RS19075 0.81 -2.2 201,896 + LRK53_RS19075 0.81 -1.2 201,897 - LRK53_RS19075 0.81 -1.1 201,897 - LRK53_RS19075 0.81 -0.7 201,897 - LRK53_RS19075 0.81 -0.1 201,897 - LRK53_RS19075 0.81 -0.1 201,897 - LRK53_RS19075 0.81 +1.2 201,897 - LRK53_RS19075 0.81 -0.6 201,897 - LRK53_RS19075 0.81 -1.2 201,897 - LRK53_RS19075 0.81 -3.1 201,897 - LRK53_RS19075 0.81 -1.6 202,029 + +0.3 202,029 + -0.6 202,029 + -1.9 202,030 - +0.6 202,030 - +0.0 202,030 - -1.4 202,030 - -2.4 202,037 + +0.1 202,050 + -2.0 202,050 + -1.2 202,050 + +0.2 202,051 - -0.2 202,051 - +0.6 202,051 - -1.0 202,051 - -0.7 202,051 - +0.6 202,051 - -1.3 202,051 - -0.6 202,120 + LRK53_RS19080 0.20 -0.8 202,120 + LRK53_RS19080 0.20 -1.4 202,120 + LRK53_RS19080 0.20 -1.7 202,121 - LRK53_RS19080 0.20 -0.6 202,121 - LRK53_RS19080 0.20 -3.5 202,151 + LRK53_RS19080 0.26 -1.7 202,151 + LRK53_RS19080 0.26 -2.5 202,151 + LRK53_RS19080 0.26 +1.3 202,152 - LRK53_RS19080 0.27 -2.2 202,152 - LRK53_RS19080 0.27 -0.6 202,152 - LRK53_RS19080 0.27 -0.1 202,152 - LRK53_RS19080 0.27 -0.2 202,268 + LRK53_RS19080 0.52 -1.6 202,268 + LRK53_RS19080 0.52 -1.1 202,268 + LRK53_RS19080 0.52 +0.4 202,268 + LRK53_RS19080 0.52 -1.4 202,268 + LRK53_RS19080 0.52 -2.4 202,269 - LRK53_RS19080 0.52 -0.7 202,269 - LRK53_RS19080 0.52 -1.3 202,269 - LRK53_RS19080 0.52 -1.0 202,269 - LRK53_RS19080 0.52 -1.7 202,362 + LRK53_RS19080 0.72 -0.3 202,362 + LRK53_RS19080 0.72 +0.3 202,363 - LRK53_RS19080 0.73 -2.2 202,566 + +1.1 202,566 + -2.5 202,566 + +3.0 202,567 - -0.4 202,617 + +1.8 202,617 + -1.6 202,617 + -2.7 202,617 + -1.6 202,617 + -0.2 202,617 + -1.5 202,617 + -0.2 202,618 - -2.3 202,618 - -1.9 202,618 - -0.7 202,719 - -0.6 202,719 - -1.0 202,726 - +0.2 202,784 - LRK53_RS19085 0.10 -0.3 203,169 + LRK53_RS19085 0.24 -0.2 203,170 - LRK53_RS19085 0.24 -2.3 203,170 - LRK53_RS19085 0.24 +0.0 203,244 + LRK53_RS19085 0.26 -0.2 203,244 + LRK53_RS19085 0.26 -2.2 203,244 + LRK53_RS19085 0.26 -0.9 203,244 + LRK53_RS19085 0.26 -1.4 203,244 + LRK53_RS19085 0.26 +0.9 203,245 - LRK53_RS19085 0.26 +0.3 203,245 - LRK53_RS19085 0.26 -1.4 203,245 - LRK53_RS19085 0.26 -1.2 203,303 - LRK53_RS19085 0.28 +1.1 203,432 + LRK53_RS19085 0.33 -1.4 203,476 - LRK53_RS19085 0.34 +1.6
Or see this region's nucleotide sequence