Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18815

Experiment: biofilm; Day1; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18805 and LRK53_RS18810 overlap by 7 nucleotidesLRK53_RS18810 and LRK53_RS18815 overlap by 17 nucleotidesLRK53_RS18815 and LRK53_RS18820 overlap by 4 nucleotides LRK53_RS18805: LRK53_RS18805 - hypothetical protein, at 151,961 to 153,238 _RS18805 LRK53_RS18810: LRK53_RS18810 - S26 family signal peptidase, at 153,232 to 153,756 _RS18810 LRK53_RS18815: LRK53_RS18815 - hypothetical protein, at 153,740 to 154,123 _RS18815 LRK53_RS18820: LRK53_RS18820 - type IV secretion system protein TraC, at 154,120 to 156,549 _RS18820 Position (kb) 153 154 155Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 152.814 kb on + strand, within LRK53_RS18805at 152.814 kb on + strand, within LRK53_RS18805at 152.814 kb on + strand, within LRK53_RS18805at 152.863 kb on - strand, within LRK53_RS18805at 152.863 kb on - strand, within LRK53_RS18805at 152.863 kb on - strand, within LRK53_RS18805at 152.871 kb on + strand, within LRK53_RS18805at 152.871 kb on + strand, within LRK53_RS18805at 152.871 kb on + strand, within LRK53_RS18805at 152.875 kb on + strand, within LRK53_RS18805at 152.875 kb on + strand, within LRK53_RS18805at 152.875 kb on + strand, within LRK53_RS18805at 152.875 kb on + strand, within LRK53_RS18805at 152.875 kb on + strand, within LRK53_RS18805at 152.876 kb on - strand, within LRK53_RS18805at 152.876 kb on - strand, within LRK53_RS18805at 152.876 kb on - strand, within LRK53_RS18805at 152.876 kb on - strand, within LRK53_RS18805at 152.876 kb on - strand, within LRK53_RS18805at 152.876 kb on - strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.078 kb on + strand, within LRK53_RS18805at 153.079 kb on - strand, within LRK53_RS18805at 153.079 kb on - strand, within LRK53_RS18805at 153.079 kb on - strand, within LRK53_RS18805at 153.079 kb on - strand, within LRK53_RS18805at 153.079 kb on - strand, within LRK53_RS18805at 153.079 kb on - strand, within LRK53_RS18805at 153.079 kb on - strand, within LRK53_RS18805at 153.079 kb on - strand, within LRK53_RS18805at 153.079 kb on - strand, within LRK53_RS18805at 153.079 kb on - strand, within LRK53_RS18805at 153.079 kb on - strand, within LRK53_RS18805at 153.079 kb on - strand, within LRK53_RS18805at 153.079 kb on - strand, within LRK53_RS18805at 153.079 kb on - strand, within LRK53_RS18805at 153.351 kb on - strand, within LRK53_RS18810at 153.351 kb on - strand, within LRK53_RS18810at 153.351 kb on - strand, within LRK53_RS18810at 153.485 kb on + strand, within LRK53_RS18810at 153.485 kb on + strand, within LRK53_RS18810at 153.485 kb on + strand, within LRK53_RS18810at 153.486 kb on - strand, within LRK53_RS18810at 153.486 kb on - strand, within LRK53_RS18810at 153.536 kb on + strand, within LRK53_RS18810at 153.537 kb on - strand, within LRK53_RS18810at 153.542 kb on + strand, within LRK53_RS18810at 153.542 kb on + strand, within LRK53_RS18810at 153.542 kb on + strand, within LRK53_RS18810at 153.542 kb on + strand, within LRK53_RS18810at 153.542 kb on + strand, within LRK53_RS18810at 153.542 kb on + strand, within LRK53_RS18810at 153.542 kb on + strand, within LRK53_RS18810at 153.542 kb on + strand, within LRK53_RS18810at 153.542 kb on + strand, within LRK53_RS18810at 153.543 kb on - strand, within LRK53_RS18810at 153.543 kb on - strand, within LRK53_RS18810at 153.543 kb on - strand, within LRK53_RS18810at 153.543 kb on - strand, within LRK53_RS18810at 153.543 kb on - strand, within LRK53_RS18810at 153.590 kb on + strand, within LRK53_RS18810at 153.590 kb on + strand, within LRK53_RS18810at 153.591 kb on - strand, within LRK53_RS18810at 153.591 kb on - strand, within LRK53_RS18810at 153.652 kb on + strand, within LRK53_RS18810at 153.652 kb on + strand, within LRK53_RS18810at 153.652 kb on + strand, within LRK53_RS18810at 153.652 kb on + strand, within LRK53_RS18810at 153.653 kb on - strand, within LRK53_RS18810at 153.653 kb on - strand, within LRK53_RS18810at 153.741 kb on + strandat 153.741 kb on + strandat 153.801 kb on + strand, within LRK53_RS18815at 153.802 kb on - strand, within LRK53_RS18815at 153.802 kb on - strand, within LRK53_RS18815at 153.819 kb on + strand, within LRK53_RS18815at 153.820 kb on - strand, within LRK53_RS18815at 153.820 kb on - strand, within LRK53_RS18815at 153.820 kb on - strand, within LRK53_RS18815at 153.820 kb on - strand, within LRK53_RS18815at 153.825 kb on + strand, within LRK53_RS18815at 153.826 kb on - strand, within LRK53_RS18815at 153.826 kb on - strand, within LRK53_RS18815at 153.826 kb on - strand, within LRK53_RS18815at 153.826 kb on - strand, within LRK53_RS18815at 153.826 kb on - strand, within LRK53_RS18815at 153.826 kb on - strand, within LRK53_RS18815at 153.826 kb on - strand, within LRK53_RS18815at 153.832 kb on + strand, within LRK53_RS18815at 153.833 kb on - strand, within LRK53_RS18815at 153.833 kb on - strand, within LRK53_RS18815at 153.846 kb on + strand, within LRK53_RS18815at 153.846 kb on + strand, within LRK53_RS18815at 153.846 kb on + strand, within LRK53_RS18815at 153.847 kb on - strand, within LRK53_RS18815at 153.847 kb on - strand, within LRK53_RS18815at 154.058 kb on + strand, within LRK53_RS18815at 154.059 kb on - strand, within LRK53_RS18815at 154.117 kb on + strandat 154.117 kb on + strandat 154.118 kb on - strandat 154.211 kb on + strandat 154.212 kb on - strandat 154.328 kb on + strandat 154.329 kb on - strandat 154.367 kb on + strand, within LRK53_RS18820at 154.367 kb on + strand, within LRK53_RS18820at 154.367 kb on + strand, within LRK53_RS18820at 154.368 kb on - strand, within LRK53_RS18820at 154.368 kb on - strand, within LRK53_RS18820at 154.368 kb on - strand, within LRK53_RS18820at 154.368 kb on - strand, within LRK53_RS18820at 154.442 kb on - strand, within LRK53_RS18820at 154.446 kb on + strand, within LRK53_RS18820at 154.446 kb on + strand, within LRK53_RS18820at 154.446 kb on + strand, within LRK53_RS18820at 154.446 kb on + strand, within LRK53_RS18820at 154.446 kb on + strand, within LRK53_RS18820at 154.446 kb on + strand, within LRK53_RS18820at 154.447 kb on - strand, within LRK53_RS18820at 154.447 kb on - strand, within LRK53_RS18820at 154.447 kb on - strand, within LRK53_RS18820at 154.447 kb on - strand, within LRK53_RS18820at 154.447 kb on - strand, within LRK53_RS18820at 154.447 kb on - strand, within LRK53_RS18820at 154.447 kb on - strand, within LRK53_RS18820at 154.447 kb on - strand, within LRK53_RS18820at 154.447 kb on - strand, within LRK53_RS18820at 154.490 kb on + strand, within LRK53_RS18820at 154.539 kb on + strand, within LRK53_RS18820at 154.670 kb on + strand, within LRK53_RS18820at 154.671 kb on - strand, within LRK53_RS18820at 154.781 kb on + strand, within LRK53_RS18820at 154.782 kb on - strand, within LRK53_RS18820at 154.790 kb on + strand, within LRK53_RS18820at 154.790 kb on + strand, within LRK53_RS18820at 154.901 kb on + strand, within LRK53_RS18820at 154.901 kb on + strand, within LRK53_RS18820at 154.901 kb on + strand, within LRK53_RS18820at 154.902 kb on - strand, within LRK53_RS18820at 154.949 kb on + strand, within LRK53_RS18820at 154.950 kb on - strand, within LRK53_RS18820at 154.950 kb on - strand, within LRK53_RS18820at 154.950 kb on - strand, within LRK53_RS18820at 154.950 kb on - strand, within LRK53_RS18820at 155.082 kb on - strand, within LRK53_RS18820at 155.082 kb on - strand, within LRK53_RS18820at 155.082 kb on - strand, within LRK53_RS18820at 155.082 kb on - strand, within LRK53_RS18820at 155.082 kb on - strand, within LRK53_RS18820at 155.115 kb on - strand, within LRK53_RS18820at 155.115 kb on - strand, within LRK53_RS18820at 155.115 kb on - strand, within LRK53_RS18820

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM;
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152,814 + LRK53_RS18805 0.67 +0.5
152,814 + LRK53_RS18805 0.67 -0.6
152,814 + LRK53_RS18805 0.67 -2.8
152,863 - LRK53_RS18805 0.71 -1.6
152,863 - LRK53_RS18805 0.71 -2.1
152,863 - LRK53_RS18805 0.71 +0.7
152,871 + LRK53_RS18805 0.71 +0.9
152,871 + LRK53_RS18805 0.71 -0.8
152,871 + LRK53_RS18805 0.71 -1.1
152,875 + LRK53_RS18805 0.72 -1.1
152,875 + LRK53_RS18805 0.72 +1.8
152,875 + LRK53_RS18805 0.72 -1.6
152,875 + LRK53_RS18805 0.72 -2.1
152,875 + LRK53_RS18805 0.72 +0.4
152,876 - LRK53_RS18805 0.72 -0.8
152,876 - LRK53_RS18805 0.72 -1.0
152,876 - LRK53_RS18805 0.72 +2.7
152,876 - LRK53_RS18805 0.72 -1.5
152,876 - LRK53_RS18805 0.72 -0.5
152,876 - LRK53_RS18805 0.72 -0.6
153,078 + LRK53_RS18805 0.87 -1.1
153,078 + LRK53_RS18805 0.87 -0.3
153,078 + LRK53_RS18805 0.87 -0.6
153,078 + LRK53_RS18805 0.87 -0.7
153,078 + LRK53_RS18805 0.87 -1.2
153,078 + LRK53_RS18805 0.87 +0.6
153,078 + LRK53_RS18805 0.87 -1.7
153,078 + LRK53_RS18805 0.87 +0.8
153,078 + LRK53_RS18805 0.87 -1.2
153,078 + LRK53_RS18805 0.87 -1.4
153,078 + LRK53_RS18805 0.87 -0.6
153,078 + LRK53_RS18805 0.87 -1.2
153,078 + LRK53_RS18805 0.87 +0.0
153,078 + LRK53_RS18805 0.87 -1.1
153,078 + LRK53_RS18805 0.87 +0.0
153,078 + LRK53_RS18805 0.87 -0.9
153,078 + LRK53_RS18805 0.87 -1.8
153,078 + LRK53_RS18805 0.87 -1.2
153,078 + LRK53_RS18805 0.87 -1.1
153,078 + LRK53_RS18805 0.87 -0.2
153,079 - LRK53_RS18805 0.87 -1.2
153,079 - LRK53_RS18805 0.87 -0.4
153,079 - LRK53_RS18805 0.87 -1.0
153,079 - LRK53_RS18805 0.87 -0.7
153,079 - LRK53_RS18805 0.87 -2.1
153,079 - LRK53_RS18805 0.87 +1.4
153,079 - LRK53_RS18805 0.87 -2.6
153,079 - LRK53_RS18805 0.87 -2.5
153,079 - LRK53_RS18805 0.87 -2.9
153,079 - LRK53_RS18805 0.87 +1.2
153,079 - LRK53_RS18805 0.87 -1.2
153,079 - LRK53_RS18805 0.87 -2.0
153,079 - LRK53_RS18805 0.87 -1.0
153,079 - LRK53_RS18805 0.87 -2.0
153,351 - LRK53_RS18810 0.23 +0.7
153,351 - LRK53_RS18810 0.23 -1.8
153,351 - LRK53_RS18810 0.23 +1.2
153,485 + LRK53_RS18810 0.48 -1.8
153,485 + LRK53_RS18810 0.48 -2.4
153,485 + LRK53_RS18810 0.48 -1.3
153,486 - LRK53_RS18810 0.48 -1.9
153,486 - LRK53_RS18810 0.48 -0.6
153,536 + LRK53_RS18810 0.58 +0.1
153,537 - LRK53_RS18810 0.58 -2.1
153,542 + LRK53_RS18810 0.59 -0.3
153,542 + LRK53_RS18810 0.59 -1.0
153,542 + LRK53_RS18810 0.59 -0.7
153,542 + LRK53_RS18810 0.59 -0.6
153,542 + LRK53_RS18810 0.59 -1.2
153,542 + LRK53_RS18810 0.59 -1.0
153,542 + LRK53_RS18810 0.59 -0.2
153,542 + LRK53_RS18810 0.59 -0.2
153,542 + LRK53_RS18810 0.59 +0.6
153,543 - LRK53_RS18810 0.59 -2.4
153,543 - LRK53_RS18810 0.59 -1.6
153,543 - LRK53_RS18810 0.59 -1.4
153,543 - LRK53_RS18810 0.59 -0.3
153,543 - LRK53_RS18810 0.59 -1.0
153,590 + LRK53_RS18810 0.68 -1.4
153,590 + LRK53_RS18810 0.68 -0.8
153,591 - LRK53_RS18810 0.68 -0.3
153,591 - LRK53_RS18810 0.68 -2.5
153,652 + LRK53_RS18810 0.80 +0.5
153,652 + LRK53_RS18810 0.80 -0.7
153,652 + LRK53_RS18810 0.80 -1.4
153,652 + LRK53_RS18810 0.80 -0.6
153,653 - LRK53_RS18810 0.80 -1.0
153,653 - LRK53_RS18810 0.80 -3.2
153,741 + +1.6
153,741 + -0.4
153,801 + LRK53_RS18815 0.16 +0.0
153,802 - LRK53_RS18815 0.16 -1.6
153,802 - LRK53_RS18815 0.16 +2.0
153,819 + LRK53_RS18815 0.21 -2.4
153,820 - LRK53_RS18815 0.21 -1.3
153,820 - LRK53_RS18815 0.21 +0.3
153,820 - LRK53_RS18815 0.21 -1.4
153,820 - LRK53_RS18815 0.21 -0.5
153,825 + LRK53_RS18815 0.22 -1.4
153,826 - LRK53_RS18815 0.22 +0.3
153,826 - LRK53_RS18815 0.22 -0.3
153,826 - LRK53_RS18815 0.22 -0.4
153,826 - LRK53_RS18815 0.22 +0.4
153,826 - LRK53_RS18815 0.22 +2.2
153,826 - LRK53_RS18815 0.22 -0.1
153,826 - LRK53_RS18815 0.22 +1.7
153,832 + LRK53_RS18815 0.24 -1.0
153,833 - LRK53_RS18815 0.24 +0.4
153,833 - LRK53_RS18815 0.24 -1.6
153,846 + LRK53_RS18815 0.28 -1.1
153,846 + LRK53_RS18815 0.28 -0.8
153,846 + LRK53_RS18815 0.28 -2.3
153,847 - LRK53_RS18815 0.28 +0.8
153,847 - LRK53_RS18815 0.28 +1.3
154,058 + LRK53_RS18815 0.83 -3.1
154,059 - LRK53_RS18815 0.83 -1.2
154,117 + -1.4
154,117 + +0.6
154,118 - -2.1
154,211 + -0.2
154,212 - -1.4
154,328 + -0.7
154,329 - +0.6
154,367 + LRK53_RS18820 0.10 -1.8
154,367 + LRK53_RS18820 0.10 -0.1
154,367 + LRK53_RS18820 0.10 -1.6
154,368 - LRK53_RS18820 0.10 -0.0
154,368 - LRK53_RS18820 0.10 +0.0
154,368 - LRK53_RS18820 0.10 -1.0
154,368 - LRK53_RS18820 0.10 +0.6
154,442 - LRK53_RS18820 0.13 -2.1
154,446 + LRK53_RS18820 0.13 -2.2
154,446 + LRK53_RS18820 0.13 -1.3
154,446 + LRK53_RS18820 0.13 -0.4
154,446 + LRK53_RS18820 0.13 -1.3
154,446 + LRK53_RS18820 0.13 -1.1
154,446 + LRK53_RS18820 0.13 -2.7
154,447 - LRK53_RS18820 0.13 -1.7
154,447 - LRK53_RS18820 0.13 +0.5
154,447 - LRK53_RS18820 0.13 -1.3
154,447 - LRK53_RS18820 0.13 -1.4
154,447 - LRK53_RS18820 0.13 -2.3
154,447 - LRK53_RS18820 0.13 -2.6
154,447 - LRK53_RS18820 0.13 -1.3
154,447 - LRK53_RS18820 0.13 +0.6
154,447 - LRK53_RS18820 0.13 +1.1
154,490 + LRK53_RS18820 0.15 -0.1
154,539 + LRK53_RS18820 0.17 -1.8
154,670 + LRK53_RS18820 0.23 -1.2
154,671 - LRK53_RS18820 0.23 -2.0
154,781 + LRK53_RS18820 0.27 +0.2
154,782 - LRK53_RS18820 0.27 -1.7
154,790 + LRK53_RS18820 0.28 +0.3
154,790 + LRK53_RS18820 0.28 -0.7
154,901 + LRK53_RS18820 0.32 +0.8
154,901 + LRK53_RS18820 0.32 -0.2
154,901 + LRK53_RS18820 0.32 -2.2
154,902 - LRK53_RS18820 0.32 -1.1
154,949 + LRK53_RS18820 0.34 -0.2
154,950 - LRK53_RS18820 0.34 -0.5
154,950 - LRK53_RS18820 0.34 -0.2
154,950 - LRK53_RS18820 0.34 -1.8
154,950 - LRK53_RS18820 0.34 -1.3
155,082 - LRK53_RS18820 0.40 -3.5
155,082 - LRK53_RS18820 0.40 -1.1
155,082 - LRK53_RS18820 0.40 -1.7
155,082 - LRK53_RS18820 0.40 -0.6
155,082 - LRK53_RS18820 0.40 +0.0
155,115 - LRK53_RS18820 0.41 -2.1
155,115 - LRK53_RS18820 0.41 -1.7
155,115 - LRK53_RS18820 0.41 -1.4

Or see this region's nucleotide sequence