Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15485

Experiment: biofilm; Day1; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM;
3,384,217	+		LRK53_RS15480	0.68	-0.4
3,384,217	+		LRK53_RS15480	0.68	-0.3
3,384,217	+		LRK53_RS15480	0.68	-1.9
3,384,218	-		LRK53_RS15480	0.68	-0.3
3,384,218	-		LRK53_RS15480	0.68	+1.0
3,384,259	+		LRK53_RS15480	0.70	-1.4
3,384,259	+		LRK53_RS15480	0.70	-1.6
3,384,259	+		LRK53_RS15480	0.70	+0.7
3,384,259	+		LRK53_RS15480	0.70	+0.5
3,384,259	+		LRK53_RS15480	0.70	-1.2
3,384,259	+		LRK53_RS15480	0.70	-0.6
3,384,259	+		LRK53_RS15480	0.70	-1.6
3,384,259	+		LRK53_RS15480	0.70	-1.6
3,384,260	-		LRK53_RS15480	0.70	+0.4
3,384,260	-		LRK53_RS15480	0.70	-2.0
3,384,260	-		LRK53_RS15480	0.70	-2.8
3,384,260	-		LRK53_RS15480	0.70	+0.9
3,384,260	-		LRK53_RS15480	0.70	-0.1
3,384,260	-		LRK53_RS15480	0.70	-2.2
3,384,260	-		LRK53_RS15480	0.70	-1.1
3,384,260	-		LRK53_RS15480	0.70	+0.5
3,384,260	-		LRK53_RS15480	0.70	-0.3
3,384,262	+		LRK53_RS15480	0.70	-0.0
3,384,262	+		LRK53_RS15480	0.70	+0.6
3,384,263	-		LRK53_RS15480	0.71	+1.0
3,384,263	-		LRK53_RS15480	0.71	-0.3
3,384,263	-		LRK53_RS15480	0.71	+0.2
3,384,263	-		LRK53_RS15480	0.71	-1.1
3,384,263	-		LRK53_RS15480	0.71	-0.5
3,384,263	-		LRK53_RS15480	0.71	-0.1
3,384,361	+		LRK53_RS15480	0.77	-0.4
3,384,361	+		LRK53_RS15480	0.77	+0.0
3,384,361	+		LRK53_RS15480	0.77	-0.1
3,384,361	+		LRK53_RS15480	0.77	+1.6
3,384,361	+		LRK53_RS15480	0.77	+0.0
3,384,361	+		LRK53_RS15480	0.77	-2.0
3,384,361	+		LRK53_RS15480	0.77	+0.7
3,384,361	+		LRK53_RS15480	0.77	-0.2
3,384,361	+		LRK53_RS15480	0.77	-1.4
3,384,362	-		LRK53_RS15480	0.77	-1.9
3,384,362	-		LRK53_RS15480	0.77	-0.1
3,384,362	-		LRK53_RS15480	0.77	-0.6
3,384,362	-		LRK53_RS15480	0.77	+0.3
3,384,362	-		LRK53_RS15480	0.77	+0.8
3,384,535	+		LRK53_RS15480	0.87	-0.7
3,384,622	+				+1.3
3,384,622	+				-0.6
3,384,622	+				-2.1
3,384,622	+				-1.4
3,384,623	-				-0.7
3,384,623	-				-0.6
3,384,623	-				-0.7
3,384,694	+				-0.3
3,384,694	+				-1.4
3,384,694	+				-2.2
3,384,694	+				-0.1
3,384,694	+				-1.2
3,384,695	-				-1.5
3,384,695	-				-0.3
3,384,695	-				-0.7
3,384,695	-				-0.0
3,384,703	+				+0.2
3,384,703	+				-2.1
3,384,703	+				-0.7
3,384,703	+				-0.4
3,384,704	-				-0.6
3,384,704	-				+0.0
3,384,704	-				-1.1
3,384,704	-				+1.6
3,384,704	-				-0.8
3,384,704	-				-0.3
3,384,704	-				-1.8
3,384,704	-				-0.2
3,384,704	-				-1.0
3,384,704	-				-0.6
3,384,804	+				-0.8
3,384,804	+				-0.7
3,384,805	-				-0.3
3,384,840	+				+1.1
3,384,840	+				-0.1
3,384,840	+				+0.0
3,384,840	+				+0.2
3,384,840	+				-0.7
3,384,840	+				-0.2
3,384,840	+				-1.6
3,384,840	+				-0.4
3,384,840	+				-0.5
3,384,840	+				+1.2
3,384,840	+				-0.2
3,384,840	+				-0.5
3,384,840	+				-1.6
3,384,840	+				-2.8
3,384,840	+				-1.1
3,384,840	+				+0.2
3,384,840	+				+0.3
3,384,841	-				-0.8
3,384,841	-				-0.3
3,384,841	-				-1.2
3,384,841	-				-0.5
3,384,841	-				+0.2
3,384,841	-				+0.2
3,384,841	-				-1.1
3,384,841	-				-1.2
3,384,841	-				-1.1
3,384,841	-				-1.4
3,384,841	-				-2.7
3,384,841	-				-0.7
3,384,841	-				-1.4
3,384,841	-				-0.8
3,384,841	-				-0.8
3,384,841	-				+1.9
3,384,841	-				-0.2
3,384,841	-				-1.1
3,384,844	+				-1.0
3,384,844	+				+0.1
3,384,845	-				-0.2
3,384,845	-				-0.4
3,384,845	-				-1.1
3,384,845	-				-1.6
3,384,845	-				-1.7
3,384,845	-				-0.4
3,384,993	-				-1.5
3,384,993	-				-0.3
3,384,993	-				-0.8
3,384,993	-				-0.3
3,385,010	+				-0.8
3,385,010	+				-1.1
3,385,010	+				-0.5
3,385,010	+				-2.1
3,385,010	+				+0.4
3,385,011	-				-2.4
3,385,011	-				-0.3
3,385,011	-				-1.5
3,385,011	-				-0.2
3,385,011	-				+0.3
3,385,011	-				+0.3
3,385,011	-				-1.0
3,385,014	+				+0.2
3,385,014	+				-0.2
3,385,014	+				-0.4
3,385,014	+				-2.5
3,385,014	+				-0.2
3,385,014	+				-0.5
3,385,014	+				-1.0
3,385,014	+				-0.7
3,385,014	+				-0.3
3,385,014	+				-1.2
3,385,014	+				-0.8
3,385,014	+				-0.2
3,385,014	+				-1.7
3,385,014	+				-1.8
3,385,014	+				-1.6
3,385,014	+				-1.3
3,385,015	-				-0.1
3,385,015	-				-1.0
3,385,015	-				+0.1
3,385,015	-				+1.0
3,385,015	-				-0.4
3,385,015	-				-0.6
3,385,015	-				+0.4
3,385,015	-				-1.2
3,385,015	-				-0.7
3,385,015	-				+0.1
3,385,015	-				-1.7
3,385,015	-				-0.3
3,385,015	-				-0.2
3,385,015	-				+0.5
3,385,015	-				-1.7
3,385,015	-				-2.2
3,385,015	-				+0.4
3,385,015	-				-2.1
3,385,015	-				-1.8
3,385,015	-				-1.7
3,385,049	+				-0.0
3,385,049	+				-1.0
3,385,049	+				-1.6
3,385,049	+				-1.4
3,385,049	+				-0.6
3,385,049	+				-0.6
3,385,049	+				-0.4
3,385,049	+				+0.9
3,385,049	+				-1.3
3,385,050	-				+0.0
3,385,050	-				-1.0
3,385,050	-				-1.4
3,385,050	-				-0.6
3,385,050	-				-0.2
3,385,050	-				-0.4
3,385,050	-				-0.2
3,385,050	-				-1.1
3,385,050	-				+0.5
3,385,171	+				+0.3
3,385,171	+				-1.8
3,385,171	+				-0.8
3,385,171	+				-2.0
3,385,171	+				+0.2
3,385,171	+				-2.1
3,385,171	+				-0.8
3,385,171	+				-2.7
3,385,171	+				-0.7
3,385,171	+				+0.1
3,385,171	+				+1.0
3,385,171	+				-0.1
3,385,171	+				-3.1
3,385,171	+				-3.1
3,385,171	+				+1.2
3,385,171	+				-0.8
3,385,171	+				-0.0
3,385,171	+				-0.2
3,385,171	+				-0.0
3,385,172	-				-1.1
3,385,172	-				-0.8
3,385,172	-				-1.8
3,385,172	-				-0.4
3,385,172	-				-0.3
3,385,172	-				-0.6
3,385,172	-				-1.1
3,385,172	-				-0.1
3,385,172	-				-0.4
3,385,172	-				-1.8
3,385,231	+				-0.5
3,385,231	+				-1.4
3,385,231	+				-0.3
3,385,231	+				-0.6
3,385,231	+				-0.0
3,385,231	+				-1.8
3,385,231	+				-0.7
3,385,231	+				-0.3
3,385,231	+				+1.6
3,385,231	+				-0.9
3,385,231	+				-1.8
3,385,231	+				+0.7
3,385,231	+				+0.2
3,385,232	-				+0.0
3,385,232	-				+2.1
3,385,232	-				-0.8
3,385,232	-				+0.7
3,385,232	-				-1.2
3,385,232	-				+0.6
3,385,232	-				+0.3
3,385,232	-				-2.5
3,385,232	-				-0.6
3,385,232	-				+3.1
3,385,232	-				+0.3
3,385,232	-				+0.9
3,385,232	-				-1.6
3,385,232	-				-2.8
3,385,232	-				-0.7
3,385,232	-				-0.7
3,385,232	-				-1.3
3,385,243	+				-2.0
3,385,243	+				-2.7
3,385,243	+				+1.3
3,385,243	+				-1.0
3,385,244	-				-2.5
3,385,244	-				+0.8
3,385,801	+		LRK53_RS15485	0.22	+2.9
3,385,801	+		LRK53_RS15485	0.22	-0.7
3,385,801	+		LRK53_RS15485	0.22	-2.1
3,385,801	+		LRK53_RS15485	0.22	+1.3
3,385,801	+		LRK53_RS15485	0.22	+1.0
3,385,801	+		LRK53_RS15485	0.22	-1.8
3,385,801	+		LRK53_RS15485	0.22	+0.3
3,385,802	-		LRK53_RS15485	0.22	+0.5
3,385,802	-		LRK53_RS15485	0.22	+1.4
3,385,802	-		LRK53_RS15485	0.22	-0.3
3,385,802	-		LRK53_RS15485	0.22	-1.7
3,385,802	-		LRK53_RS15485	0.22	-0.5
3,385,802	-		LRK53_RS15485	0.22	-0.6
3,385,802	-		LRK53_RS15485	0.22	-1.9
3,385,858	+		LRK53_RS15485	0.24	-1.0
3,385,858	+		LRK53_RS15485	0.24	+0.4
3,385,858	+		LRK53_RS15485	0.24	+0.1
3,385,858	+		LRK53_RS15485	0.24	+0.2
3,385,858	+		LRK53_RS15485	0.24	-0.6
3,385,859	-		LRK53_RS15485	0.24	-1.2
3,385,859	-		LRK53_RS15485	0.24	-3.6
3,385,859	-		LRK53_RS15485	0.24	-0.4
3,385,859	-		LRK53_RS15485	0.24	-1.5
3,386,089	+		LRK53_RS15485	0.32	-1.6
3,386,089	+		LRK53_RS15485	0.32	-0.6
3,386,089	+		LRK53_RS15485	0.32	-1.5
3,386,089	+		LRK53_RS15485	0.32	-0.6
3,386,090	-		LRK53_RS15485	0.32	-1.3
3,386,090	-		LRK53_RS15485	0.32	-1.4
3,386,090	-		LRK53_RS15485	0.32	+0.5
3,386,113	+		LRK53_RS15485	0.32	-1.0
3,386,113	+		LRK53_RS15485	0.32	-0.1
3,386,113	+		LRK53_RS15485	0.32	-0.2
3,386,113	+		LRK53_RS15485	0.32	+0.0
3,386,113	+		LRK53_RS15485	0.32	+0.8
3,386,113	+		LRK53_RS15485	0.32	-1.2
3,386,113	+		LRK53_RS15485	0.32	-0.1
3,386,114	-		LRK53_RS15485	0.32	+0.9
3,386,114	-		LRK53_RS15485	0.32	-1.6
3,386,114	-		LRK53_RS15485	0.32	-4.0
3,386,114	-		LRK53_RS15485	0.32	+0.5
3,386,114	-		LRK53_RS15485	0.32	+1.2
3,386,114	-		LRK53_RS15485	0.32	-0.7
3,386,230	+		LRK53_RS15485	0.36	+0.2
3,386,230	+		LRK53_RS15485	0.36	-0.8
3,386,230	+		LRK53_RS15485	0.36	-2.2
3,386,231	-		LRK53_RS15485	0.36	-1.1
3,386,231	-		LRK53_RS15485	0.36	-1.8
3,386,263	+		LRK53_RS15485	0.38	-0.3
3,386,263	+		LRK53_RS15485	0.38	-2.0
3,386,263	+		LRK53_RS15485	0.38	+1.2
3,386,264	-		LRK53_RS15485	0.38	-2.3
3,386,264	-		LRK53_RS15485	0.38	+0.3
3,386,287	+		LRK53_RS15485	0.38	-1.2
3,386,288	-		LRK53_RS15485	0.38	-0.5
3,386,288	-		LRK53_RS15485	0.38	-1.2
3,386,353	+		LRK53_RS15485	0.41	-2.2
3,386,353	+		LRK53_RS15485	0.41	+0.3
3,386,353	+		LRK53_RS15485	0.41	-0.6
3,386,392	+		LRK53_RS15485	0.42	-0.2
3,386,392	+		LRK53_RS15485	0.42	+0.0
3,386,392	+		LRK53_RS15485	0.42	+1.6
3,386,392	+		LRK53_RS15485	0.42	-1.0
3,386,392	+		LRK53_RS15485	0.42	-1.2
3,386,393	-		LRK53_RS15485	0.42	+0.1
3,386,393	-		LRK53_RS15485	0.42	+0.5
3,386,393	-		LRK53_RS15485	0.42	-0.6
3,386,393	-		LRK53_RS15485	0.42	-0.9
3,386,393	-		LRK53_RS15485	0.42	-1.0
3,386,393	-		LRK53_RS15485	0.42	-1.4
3,386,393	-		LRK53_RS15485	0.42	+0.6
3,386,393	-		LRK53_RS15485	0.42	-0.7
3,386,393	-		LRK53_RS15485	0.42	-1.1
3,386,467	+		LRK53_RS15485	0.45	-1.1
3,386,488	+		LRK53_RS15485	0.45	+1.0
3,386,488	+		LRK53_RS15485	0.45	-0.4
3,386,488	+		LRK53_RS15485	0.45	+0.4
3,386,488	+		LRK53_RS15485	0.45	-2.0
3,386,488	+		LRK53_RS15485	0.45	-0.2
3,386,488	+		LRK53_RS15485	0.45	+0.3
3,386,488	+		LRK53_RS15485	0.45	-1.6
3,386,489	-		LRK53_RS15485	0.45	-2.0
3,386,489	-		LRK53_RS15485	0.45	-0.2
3,386,489	-		LRK53_RS15485	0.45	+0.4
3,386,489	-		LRK53_RS15485	0.45	+1.3
3,386,489	-		LRK53_RS15485	0.45	-1.3
3,386,489	-		LRK53_RS15485	0.45	-2.0
3,386,489	-		LRK53_RS15485	0.45	-1.2
3,386,489	-		LRK53_RS15485	0.45	-2.5
3,386,489	-		LRK53_RS15485	0.45	-2.2
3,386,489	-		LRK53_RS15485	0.45	-0.4
3,386,584	+		LRK53_RS15485	0.49	-1.2
3,386,584	+		LRK53_RS15485	0.49	+0.1
3,386,584	+		LRK53_RS15485	0.49	-2.9
3,386,584	+		LRK53_RS15485	0.49	+1.6
3,386,585	-		LRK53_RS15485	0.49	-1.9
3,386,585	-		LRK53_RS15485	0.49	-1.6
3,386,585	-		LRK53_RS15485	0.49	-0.9
3,386,662	+		LRK53_RS15485	0.51	-0.4
3,386,662	+		LRK53_RS15485	0.51	-1.0
3,386,663	-		LRK53_RS15485	0.51	-0.8
3,386,663	-		LRK53_RS15485	0.51	+0.1
3,386,663	-		LRK53_RS15485	0.51	-1.1
3,386,683	+		LRK53_RS15485	0.52	+0.9
3,386,683	+		LRK53_RS15485	0.52	-1.6
3,386,683	+		LRK53_RS15485	0.52	-1.7
3,386,683	+		LRK53_RS15485	0.52	-1.2
3,386,683	+		LRK53_RS15485	0.52	+1.8
3,386,683	+		LRK53_RS15485	0.52	-0.5
3,386,683	+		LRK53_RS15485	0.52	+0.3
3,386,683	+		LRK53_RS15485	0.52	-1.2
3,386,683	+		LRK53_RS15485	0.52	+0.0
3,386,683	+		LRK53_RS15485	0.52	-1.0
3,386,683	+		LRK53_RS15485	0.52	-0.2
3,386,683	+		LRK53_RS15485	0.52	-0.2
3,386,684	-		LRK53_RS15485	0.52	+0.2
3,386,684	-		LRK53_RS15485	0.52	-1.5
3,386,684	-		LRK53_RS15485	0.52	-2.1
3,386,684	-		LRK53_RS15485	0.52	-1.4
3,386,684	-		LRK53_RS15485	0.52	-0.7
3,386,684	-		LRK53_RS15485	0.52	+1.3
3,386,684	-		LRK53_RS15485	0.52	+0.9
3,386,684	-		LRK53_RS15485	0.52	-1.3
3,386,684	-		LRK53_RS15485	0.52	-1.0
3,386,684	-		LRK53_RS15485	0.52	-1.1
3,386,684	-		LRK53_RS15485	0.52	-2.7
3,386,815	+		LRK53_RS15485	0.57	+0.2
3,386,815	+		LRK53_RS15485	0.57	-1.6
3,386,816	-		LRK53_RS15485	0.57	+0.8
3,386,816	-		LRK53_RS15485	0.57	+0.6
3,386,816	-		LRK53_RS15485	0.57	-1.3
3,386,816	-		LRK53_RS15485	0.57	-0.3
3,386,816	-		LRK53_RS15485	0.57	+0.2
3,386,926	+		LRK53_RS15485	0.60	-1.8
3,386,926	+		LRK53_RS15485	0.60	-1.6
3,386,927	-		LRK53_RS15485	0.60	-0.1
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3,386,950	+		LRK53_RS15485	0.61	-2.1
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3,386,950	+		LRK53_RS15485	0.61	-1.8
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3,386,950	+		LRK53_RS15485	0.61	-0.7
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3,386,950	+		LRK53_RS15485	0.61	-0.2
3,386,950	+		LRK53_RS15485	0.61	-1.6
3,386,950	+		LRK53_RS15485	0.61	-2.0
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3,386,950	+		LRK53_RS15485	0.61	+0.0
3,386,950	+		LRK53_RS15485	0.61	+1.0
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3,386,950	+		LRK53_RS15485	0.61	-1.9
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3,386,950	+		LRK53_RS15485	0.61	-0.2
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3,386,951	-		LRK53_RS15485	0.61	-1.2
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3,387,094	+		LRK53_RS15485	0.66	-1.3
3,387,094	+		LRK53_RS15485	0.66	-0.1
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3,387,094	+		LRK53_RS15485	0.66	+1.0
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3,387,094	+		LRK53_RS15485	0.66	-1.2
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3,387,340	+		LRK53_RS15485	0.75	-1.7
3,387,340	+		LRK53_RS15485	0.75	-1.0
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3,387,340	+		LRK53_RS15485	0.75	-1.1
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3,387,436	+		LRK53_RS15485	0.78	-0.2
3,387,457	+		LRK53_RS15485	0.79	-1.1
3,387,457	+		LRK53_RS15485	0.79	-1.3
3,387,457	+		LRK53_RS15485	0.79	-1.1
3,387,457	+		LRK53_RS15485	0.79	-2.4
3,387,457	+		LRK53_RS15485	0.79	-3.3
3,387,457	+		LRK53_RS15485	0.79	-0.8
3,387,457	+		LRK53_RS15485	0.79	-1.6
3,387,457	+		LRK53_RS15485	0.79	+1.3
3,387,457	+		LRK53_RS15485	0.79	-1.7
3,387,457	+		LRK53_RS15485	0.79	-0.1
3,387,457	+		LRK53_RS15485	0.79	-1.5
3,387,457	+		LRK53_RS15485	0.79	+1.0
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3,387,458	-		LRK53_RS15485	0.79	-1.3
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3,387,458	-		LRK53_RS15485	0.79	-1.5
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3,387,458	-		LRK53_RS15485	0.79	+0.1
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3,387,478	+		LRK53_RS15485	0.80	-1.5
3,387,478	+		LRK53_RS15485	0.80	+0.5
3,387,478	+		LRK53_RS15485	0.80	-1.0
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3,387,484	+		LRK53_RS15485	0.80	-1.8
3,387,484	+		LRK53_RS15485	0.80	-0.6
3,387,485	-		LRK53_RS15485	0.80	-0.2
3,387,589	+		LRK53_RS15485	0.83	-2.1
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3,387,700	+		LRK53_RS15485	0.87	+1.2
3,387,700	+		LRK53_RS15485	0.87	-0.7
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3,387,701	-		LRK53_RS15485	0.87	-1.9
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3,387,701	-		LRK53_RS15485	0.87	-0.7
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3,387,766	+		LRK53_RS15485	0.89	+1.2
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3,387,766	+		LRK53_RS15485	0.89	-2.4
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3,387,767	-		LRK53_RS15485	0.89	-1.1
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3,387,767	-		LRK53_RS15485	0.89	-1.1
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3,387,767	-		LRK53_RS15485	0.89	-1.4
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3,387,770	-		LRK53_RS15485	0.90	+0.9
3,387,808	+				-2.2
3,387,808	+				-2.1
3,387,808	+				-0.5
3,387,808	+				+0.2
3,387,809	-				-0.3
3,387,809	-				-1.3
3,387,809	-				-1.1
3,387,809	-				+0.4
3,387,809	-				-1.0
3,387,809	-				-2.8
3,387,886	+				-0.6
3,387,886	+				+0.2
3,387,887	-				-0.7
3,387,904	+				-0.6
3,387,904	+				-1.3
3,387,905	-				-1.7
3,387,905	-				+1.4
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3,387,986	-				+1.0
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3,388,057	+				-1.1
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3,388,058	-				+1.2
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3,388,085	+				+1.3
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