Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05625

Experiment: biofilm; Day1; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05620 and LRK53_RS05625 overlap by 4 nucleotidesLRK53_RS05625 and LRK53_RS05630 are separated by 54 nucleotidesLRK53_RS05630 and LRK53_RS05635 are separated by 24 nucleotides LRK53_RS05620: LRK53_RS05620 - 3-dehydroquinate synthase, at 1,309,517 to 1,310,617 _RS05620 LRK53_RS05625: LRK53_RS05625 - shikimate kinase, at 1,310,614 to 1,311,168 _RS05625 LRK53_RS05630: LRK53_RS05630 - SDR family oxidoreductase, at 1,311,223 to 1,312,056 _RS05630 LRK53_RS05635: LRK53_RS05635 - YbjQ family protein, at 1,312,081 to 1,312,425 _RS05635 Position (kb) 1310 1311 1312Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1310.874 kb on - strand, within LRK53_RS05625at 1310.874 kb on - strand, within LRK53_RS05625at 1311.087 kb on - strand, within LRK53_RS05625at 1311.087 kb on - strand, within LRK53_RS05625at 1311.087 kb on - strand, within LRK53_RS05625at 1311.180 kb on - strandat 1311.180 kb on - strandat 1311.180 kb on - strandat 1311.424 kb on + strand, within LRK53_RS05630at 1311.424 kb on + strand, within LRK53_RS05630at 1311.424 kb on + strand, within LRK53_RS05630at 1311.424 kb on + strand, within LRK53_RS05630at 1311.424 kb on + strand, within LRK53_RS05630at 1311.424 kb on + strand, within LRK53_RS05630at 1311.424 kb on + strand, within LRK53_RS05630at 1311.424 kb on + strand, within LRK53_RS05630at 1311.424 kb on + strand, within LRK53_RS05630at 1311.425 kb on - strand, within LRK53_RS05630at 1311.425 kb on - strand, within LRK53_RS05630at 1311.425 kb on - strand, within LRK53_RS05630at 1311.490 kb on + strand, within LRK53_RS05630at 1311.490 kb on + strand, within LRK53_RS05630at 1311.491 kb on - strand, within LRK53_RS05630at 1311.491 kb on - strand, within LRK53_RS05630at 1311.530 kb on + strand, within LRK53_RS05630at 1311.531 kb on - strand, within LRK53_RS05630at 1311.531 kb on - strand, within LRK53_RS05630at 1311.531 kb on - strand, within LRK53_RS05630at 1311.531 kb on - strand, within LRK53_RS05630at 1311.556 kb on + strand, within LRK53_RS05630at 1311.557 kb on - strand, within LRK53_RS05630at 1311.557 kb on - strand, within LRK53_RS05630at 1311.697 kb on + strand, within LRK53_RS05630at 1311.697 kb on + strand, within LRK53_RS05630at 1311.850 kb on + strand, within LRK53_RS05630at 1311.850 kb on + strand, within LRK53_RS05630at 1311.850 kb on + strand, within LRK53_RS05630at 1311.850 kb on + strand, within LRK53_RS05630at 1311.851 kb on - strand, within LRK53_RS05630at 1311.851 kb on - strand, within LRK53_RS05630at 1311.851 kb on - strand, within LRK53_RS05630at 1311.851 kb on - strand, within LRK53_RS05630at 1311.851 kb on - strand, within LRK53_RS05630at 1311.892 kb on + strand, within LRK53_RS05630at 1311.892 kb on + strand, within LRK53_RS05630at 1311.892 kb on + strand, within LRK53_RS05630at 1311.892 kb on + strand, within LRK53_RS05630at 1311.892 kb on + strand, within LRK53_RS05630at 1311.892 kb on + strand, within LRK53_RS05630at 1311.892 kb on + strand, within LRK53_RS05630at 1311.893 kb on - strand, within LRK53_RS05630at 1311.893 kb on - strand, within LRK53_RS05630at 1311.893 kb on - strand, within LRK53_RS05630at 1311.893 kb on - strand, within LRK53_RS05630at 1311.893 kb on - strand, within LRK53_RS05630at 1311.893 kb on - strand, within LRK53_RS05630

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM;
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1,310,874 - LRK53_RS05625 0.47 -0.9
1,310,874 - LRK53_RS05625 0.47 -0.9
1,311,087 - LRK53_RS05625 0.85 -1.3
1,311,087 - LRK53_RS05625 0.85 -0.1
1,311,087 - LRK53_RS05625 0.85 -2.1
1,311,180 - +0.8
1,311,180 - -0.3
1,311,180 - -1.4
1,311,424 + LRK53_RS05630 0.24 -0.5
1,311,424 + LRK53_RS05630 0.24 +0.1
1,311,424 + LRK53_RS05630 0.24 +1.9
1,311,424 + LRK53_RS05630 0.24 -2.1
1,311,424 + LRK53_RS05630 0.24 +1.1
1,311,424 + LRK53_RS05630 0.24 -1.2
1,311,424 + LRK53_RS05630 0.24 +0.5
1,311,424 + LRK53_RS05630 0.24 -0.2
1,311,424 + LRK53_RS05630 0.24 +1.7
1,311,425 - LRK53_RS05630 0.24 -0.8
1,311,425 - LRK53_RS05630 0.24 -0.7
1,311,425 - LRK53_RS05630 0.24 +0.3
1,311,490 + LRK53_RS05630 0.32 +0.3
1,311,490 + LRK53_RS05630 0.32 +1.0
1,311,491 - LRK53_RS05630 0.32 -0.4
1,311,491 - LRK53_RS05630 0.32 -1.3
1,311,530 + LRK53_RS05630 0.37 +0.6
1,311,531 - LRK53_RS05630 0.37 +0.1
1,311,531 - LRK53_RS05630 0.37 +0.3
1,311,531 - LRK53_RS05630 0.37 -0.2
1,311,531 - LRK53_RS05630 0.37 +0.6
1,311,556 + LRK53_RS05630 0.40 -0.6
1,311,557 - LRK53_RS05630 0.40 -0.8
1,311,557 - LRK53_RS05630 0.40 -0.4
1,311,697 + LRK53_RS05630 0.57 -1.2
1,311,697 + LRK53_RS05630 0.57 -0.9
1,311,850 + LRK53_RS05630 0.75 -1.2
1,311,850 + LRK53_RS05630 0.75 +3.2
1,311,850 + LRK53_RS05630 0.75 +1.3
1,311,850 + LRK53_RS05630 0.75 -1.2
1,311,851 - LRK53_RS05630 0.75 -1.1
1,311,851 - LRK53_RS05630 0.75 +0.3
1,311,851 - LRK53_RS05630 0.75 -0.3
1,311,851 - LRK53_RS05630 0.75 +2.6
1,311,851 - LRK53_RS05630 0.75 -0.2
1,311,892 + LRK53_RS05630 0.80 -3.4
1,311,892 + LRK53_RS05630 0.80 -1.0
1,311,892 + LRK53_RS05630 0.80 -0.8
1,311,892 + LRK53_RS05630 0.80 +0.3
1,311,892 + LRK53_RS05630 0.80 -3.0
1,311,892 + LRK53_RS05630 0.80 -2.1
1,311,892 + LRK53_RS05630 0.80 -1.5
1,311,893 - LRK53_RS05630 0.80 +1.7
1,311,893 - LRK53_RS05630 0.80 -0.7
1,311,893 - LRK53_RS05630 0.80 +0.3
1,311,893 - LRK53_RS05630 0.80 +0.9
1,311,893 - LRK53_RS05630 0.80 +1.6
1,311,893 - LRK53_RS05630 0.80 -1.1

Or see this region's nucleotide sequence