Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04445

Experiment: biofilm; Day1; NLDM;

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS04435 and LRK53_RS04440 are separated by 116 nucleotidesLRK53_RS04440 and LRK53_RS04445 are separated by 111 nucleotidesLRK53_RS04445 and LRK53_RS04450 are separated by 143 nucleotidesLRK53_RS04450 and LRK53_RS04455 overlap by 4 nucleotidesLRK53_RS04455 and LRK53_RS04460 are separated by 157 nucleotides LRK53_RS04435: LRK53_RS04435 - electron transfer flavoprotein subunit alpha/FixB family protein, at 1,030,551 to 1,031,495 _RS04435 LRK53_RS04440: LRK53_RS04440 - electron transfer flavoprotein subunit beta/FixA family protein, at 1,031,612 to 1,032,358 _RS04440 LRK53_RS04445: LRK53_RS04445 - glycoside hydrolase family 99-like domain-containing protein, at 1,032,470 to 1,034,530 _RS04445 LRK53_RS04450: LRK53_RS04450 - transcriptional regulator, at 1,034,674 to 1,035,015 _RS04450 LRK53_RS04455: LRK53_RS04455 - DUF6516 family protein, at 1,035,012 to 1,035,299 _RS04455 LRK53_RS04460: LRK53_RS04460 - glycosyltransferase, at 1,035,457 to 1,037,436 _RS04460 Position (kb) 1032 1033 1034 1035Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1031.613 kb on + strandat 1031.613 kb on + strandat 1031.613 kb on + strandat 1031.613 kb on + strandat 1031.613 kb on + strandat 1031.613 kb on + strandat 1031.613 kb on + strandat 1031.614 kb on - strandat 1031.700 kb on + strand, within LRK53_RS04440at 1031.700 kb on + strand, within LRK53_RS04440at 1031.701 kb on - strand, within LRK53_RS04440at 1031.701 kb on - strand, within LRK53_RS04440at 1031.701 kb on - strand, within LRK53_RS04440at 1031.701 kb on - strand, within LRK53_RS04440at 1031.701 kb on - strand, within LRK53_RS04440at 1031.701 kb on - strand, within LRK53_RS04440at 1032.321 kb on + strandat 1032.321 kb on + strandat 1032.321 kb on + strandat 1032.321 kb on + strandat 1032.321 kb on + strandat 1032.321 kb on + strandat 1032.321 kb on + strandat 1032.321 kb on + strandat 1032.322 kb on - strandat 1032.322 kb on - strandat 1032.322 kb on - strandat 1032.322 kb on - strandat 1032.322 kb on - strandat 1032.322 kb on - strandat 1032.322 kb on - strandat 1032.322 kb on - strandat 1032.340 kb on - strandat 1032.340 kb on - strandat 1032.432 kb on + strandat 1032.432 kb on + strandat 1032.432 kb on + strandat 1032.433 kb on - strandat 1032.433 kb on - strandat 1032.795 kb on + strand, within LRK53_RS04445at 1032.795 kb on + strand, within LRK53_RS04445at 1032.972 kb on - strand, within LRK53_RS04445at 1033.687 kb on - strand, within LRK53_RS04445at 1034.032 kb on - strand, within LRK53_RS04445at 1034.038 kb on - strand, within LRK53_RS04445at 1034.253 kb on + strand, within LRK53_RS04445at 1034.254 kb on - strand, within LRK53_RS04445at 1034.490 kb on - strandat 1034.675 kb on + strandat 1034.675 kb on + strandat 1034.676 kb on - strandat 1034.676 kb on - strandat 1034.718 kb on - strand, within LRK53_RS04450at 1034.718 kb on - strand, within LRK53_RS04450at 1034.729 kb on - strand, within LRK53_RS04450at 1034.729 kb on - strand, within LRK53_RS04450at 1035.085 kb on + strand, within LRK53_RS04455at 1035.085 kb on + strand, within LRK53_RS04455at 1035.085 kb on + strand, within LRK53_RS04455at 1035.085 kb on + strand, within LRK53_RS04455at 1035.085 kb on + strand, within LRK53_RS04455at 1035.086 kb on - strand, within LRK53_RS04455at 1035.086 kb on - strand, within LRK53_RS04455at 1035.086 kb on - strand, within LRK53_RS04455at 1035.086 kb on - strand, within LRK53_RS04455at 1035.086 kb on - strand, within LRK53_RS04455at 1035.086 kb on - strand, within LRK53_RS04455at 1035.086 kb on - strand, within LRK53_RS04455at 1035.142 kb on + strand, within LRK53_RS04455at 1035.142 kb on + strand, within LRK53_RS04455at 1035.142 kb on + strand, within LRK53_RS04455at 1035.142 kb on + strand, within LRK53_RS04455at 1035.142 kb on + strand, within LRK53_RS04455at 1035.142 kb on + strand, within LRK53_RS04455at 1035.142 kb on + strand, within LRK53_RS04455at 1035.142 kb on + strand, within LRK53_RS04455at 1035.143 kb on - strand, within LRK53_RS04455at 1035.143 kb on - strand, within LRK53_RS04455at 1035.143 kb on - strand, within LRK53_RS04455at 1035.143 kb on - strand, within LRK53_RS04455at 1035.143 kb on - strand, within LRK53_RS04455at 1035.150 kb on + strand, within LRK53_RS04455at 1035.150 kb on + strand, within LRK53_RS04455at 1035.150 kb on + strand, within LRK53_RS04455at 1035.151 kb on - strand, within LRK53_RS04455at 1035.151 kb on - strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.184 kb on + strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.185 kb on - strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.190 kb on + strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.191 kb on - strand, within LRK53_RS04455at 1035.311 kb on + strandat 1035.311 kb on + strandat 1035.311 kb on + strandat 1035.311 kb on + strandat 1035.311 kb on + strandat 1035.311 kb on + strandat 1035.311 kb on + strandat 1035.312 kb on - strandat 1035.312 kb on - strandat 1035.312 kb on - strandat 1035.312 kb on - strandat 1035.312 kb on - strandat 1035.312 kb on - strandat 1035.312 kb on - strandat 1035.312 kb on - strandat 1035.338 kb on + strandat 1035.339 kb on - strandat 1035.448 kb on + strandat 1035.448 kb on + strandat 1035.448 kb on + strandat 1035.449 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM;
remove
1,031,613 + -0.5
1,031,613 + -0.9
1,031,613 + -0.7
1,031,613 + -0.3
1,031,613 + +1.9
1,031,613 + -1.0
1,031,613 + +0.2
1,031,614 - -0.1
1,031,700 + LRK53_RS04440 0.12 -0.2
1,031,700 + LRK53_RS04440 0.12 -0.3
1,031,701 - LRK53_RS04440 0.12 -0.8
1,031,701 - LRK53_RS04440 0.12 -0.6
1,031,701 - LRK53_RS04440 0.12 -0.6
1,031,701 - LRK53_RS04440 0.12 +1.0
1,031,701 - LRK53_RS04440 0.12 -0.3
1,031,701 - LRK53_RS04440 0.12 +0.4
1,032,321 + -0.4
1,032,321 + -1.4
1,032,321 + -0.7
1,032,321 + -0.6
1,032,321 + -1.7
1,032,321 + -0.2
1,032,321 + +0.1
1,032,321 + -1.4
1,032,322 - -0.3
1,032,322 - -0.2
1,032,322 - -1.4
1,032,322 - -2.6
1,032,322 - -0.8
1,032,322 - -1.1
1,032,322 - -2.2
1,032,322 - +1.0
1,032,340 - -0.4
1,032,340 - -2.7
1,032,432 + -1.5
1,032,432 + +0.5
1,032,432 + -0.2
1,032,433 - -0.4
1,032,433 - -0.8
1,032,795 + LRK53_RS04445 0.16 -0.8
1,032,795 + LRK53_RS04445 0.16 -0.0
1,032,972 - LRK53_RS04445 0.24 -1.8
1,033,687 - LRK53_RS04445 0.59 -0.0
1,034,032 - LRK53_RS04445 0.76 -0.8
1,034,038 - LRK53_RS04445 0.76 -0.8
1,034,253 + LRK53_RS04445 0.87 -0.8
1,034,254 - LRK53_RS04445 0.87 +0.6
1,034,490 - -1.8
1,034,675 + -0.3
1,034,675 + -1.3
1,034,676 - -0.2
1,034,676 - -1.3
1,034,718 - LRK53_RS04450 0.13 -1.4
1,034,718 - LRK53_RS04450 0.13 +0.3
1,034,729 - LRK53_RS04450 0.16 +0.5
1,034,729 - LRK53_RS04450 0.16 +0.7
1,035,085 + LRK53_RS04455 0.25 -1.3
1,035,085 + LRK53_RS04455 0.25 +1.4
1,035,085 + LRK53_RS04455 0.25 -0.6
1,035,085 + LRK53_RS04455 0.25 +0.3
1,035,085 + LRK53_RS04455 0.25 -1.1
1,035,086 - LRK53_RS04455 0.26 +0.7
1,035,086 - LRK53_RS04455 0.26 -0.8
1,035,086 - LRK53_RS04455 0.26 -2.5
1,035,086 - LRK53_RS04455 0.26 -2.2
1,035,086 - LRK53_RS04455 0.26 -1.0
1,035,086 - LRK53_RS04455 0.26 -0.7
1,035,086 - LRK53_RS04455 0.26 -1.6
1,035,142 + LRK53_RS04455 0.45 -1.3
1,035,142 + LRK53_RS04455 0.45 -1.0
1,035,142 + LRK53_RS04455 0.45 +0.7
1,035,142 + LRK53_RS04455 0.45 +3.2
1,035,142 + LRK53_RS04455 0.45 -0.2
1,035,142 + LRK53_RS04455 0.45 +0.8
1,035,142 + LRK53_RS04455 0.45 +3.4
1,035,142 + LRK53_RS04455 0.45 -1.6
1,035,143 - LRK53_RS04455 0.45 -0.4
1,035,143 - LRK53_RS04455 0.45 +0.8
1,035,143 - LRK53_RS04455 0.45 -0.6
1,035,143 - LRK53_RS04455 0.45 -0.2
1,035,143 - LRK53_RS04455 0.45 -1.1
1,035,150 + LRK53_RS04455 0.48 -0.0
1,035,150 + LRK53_RS04455 0.48 -1.4
1,035,150 + LRK53_RS04455 0.48 +0.3
1,035,151 - LRK53_RS04455 0.48 -1.3
1,035,151 - LRK53_RS04455 0.48 -0.6
1,035,184 + LRK53_RS04455 0.60 -0.2
1,035,184 + LRK53_RS04455 0.60 +1.6
1,035,184 + LRK53_RS04455 0.60 +0.3
1,035,184 + LRK53_RS04455 0.60 -2.0
1,035,184 + LRK53_RS04455 0.60 +0.7
1,035,184 + LRK53_RS04455 0.60 -0.4
1,035,184 + LRK53_RS04455 0.60 +0.1
1,035,184 + LRK53_RS04455 0.60 +1.6
1,035,184 + LRK53_RS04455 0.60 -1.6
1,035,184 + LRK53_RS04455 0.60 -1.7
1,035,184 + LRK53_RS04455 0.60 +0.7
1,035,184 + LRK53_RS04455 0.60 +0.6
1,035,184 + LRK53_RS04455 0.60 -0.2
1,035,184 + LRK53_RS04455 0.60 +0.6
1,035,184 + LRK53_RS04455 0.60 -0.2
1,035,184 + LRK53_RS04455 0.60 -0.7
1,035,184 + LRK53_RS04455 0.60 -1.8
1,035,184 + LRK53_RS04455 0.60 -0.4
1,035,184 + LRK53_RS04455 0.60 -0.7
1,035,185 - LRK53_RS04455 0.60 -1.2
1,035,185 - LRK53_RS04455 0.60 -1.0
1,035,185 - LRK53_RS04455 0.60 -1.3
1,035,185 - LRK53_RS04455 0.60 -1.7
1,035,185 - LRK53_RS04455 0.60 +1.0
1,035,185 - LRK53_RS04455 0.60 -1.3
1,035,185 - LRK53_RS04455 0.60 -1.2
1,035,185 - LRK53_RS04455 0.60 +0.2
1,035,185 - LRK53_RS04455 0.60 +0.8
1,035,185 - LRK53_RS04455 0.60 -1.0
1,035,185 - LRK53_RS04455 0.60 -0.4
1,035,185 - LRK53_RS04455 0.60 -1.1
1,035,185 - LRK53_RS04455 0.60 +0.6
1,035,185 - LRK53_RS04455 0.60 -1.1
1,035,185 - LRK53_RS04455 0.60 -2.5
1,035,185 - LRK53_RS04455 0.60 -0.2
1,035,185 - LRK53_RS04455 0.60 -1.7
1,035,185 - LRK53_RS04455 0.60 -0.9
1,035,185 - LRK53_RS04455 0.60 -0.6
1,035,185 - LRK53_RS04455 0.60 +1.4
1,035,185 - LRK53_RS04455 0.60 -1.0
1,035,185 - LRK53_RS04455 0.60 -2.1
1,035,185 - LRK53_RS04455 0.60 -0.0
1,035,185 - LRK53_RS04455 0.60 -0.7
1,035,190 + LRK53_RS04455 0.62 -0.6
1,035,190 + LRK53_RS04455 0.62 +0.6
1,035,190 + LRK53_RS04455 0.62 -2.0
1,035,190 + LRK53_RS04455 0.62 -1.3
1,035,190 + LRK53_RS04455 0.62 -1.6
1,035,190 + LRK53_RS04455 0.62 -0.8
1,035,190 + LRK53_RS04455 0.62 -1.9
1,035,190 + LRK53_RS04455 0.62 -1.3
1,035,190 + LRK53_RS04455 0.62 -3.5
1,035,190 + LRK53_RS04455 0.62 -1.2
1,035,190 + LRK53_RS04455 0.62 -0.5
1,035,190 + LRK53_RS04455 0.62 -0.6
1,035,190 + LRK53_RS04455 0.62 -0.0
1,035,190 + LRK53_RS04455 0.62 -1.1
1,035,190 + LRK53_RS04455 0.62 -0.2
1,035,190 + LRK53_RS04455 0.62 -0.3
1,035,190 + LRK53_RS04455 0.62 -0.6
1,035,191 - LRK53_RS04455 0.62 -0.0
1,035,191 - LRK53_RS04455 0.62 -3.0
1,035,191 - LRK53_RS04455 0.62 -2.2
1,035,191 - LRK53_RS04455 0.62 +0.7
1,035,191 - LRK53_RS04455 0.62 -2.6
1,035,191 - LRK53_RS04455 0.62 -0.6
1,035,191 - LRK53_RS04455 0.62 -0.9
1,035,191 - LRK53_RS04455 0.62 -0.3
1,035,191 - LRK53_RS04455 0.62 -2.4
1,035,191 - LRK53_RS04455 0.62 -2.0
1,035,191 - LRK53_RS04455 0.62 -0.0
1,035,191 - LRK53_RS04455 0.62 -0.0
1,035,191 - LRK53_RS04455 0.62 -0.9
1,035,191 - LRK53_RS04455 0.62 +1.0
1,035,191 - LRK53_RS04455 0.62 -0.6
1,035,191 - LRK53_RS04455 0.62 -0.2
1,035,191 - LRK53_RS04455 0.62 +0.0
1,035,191 - LRK53_RS04455 0.62 -1.6
1,035,311 + -1.1
1,035,311 + +0.3
1,035,311 + -1.1
1,035,311 + -1.0
1,035,311 + -0.1
1,035,311 + -0.2
1,035,311 + -0.2
1,035,312 - +0.4
1,035,312 - -0.9
1,035,312 - +0.5
1,035,312 - -0.9
1,035,312 - -1.3
1,035,312 - +1.0
1,035,312 - -0.7
1,035,312 - +0.2
1,035,338 + +0.9
1,035,339 - +0.1
1,035,448 + -0.0
1,035,448 + -0.6
1,035,448 + -1.7
1,035,449 - -1.2

Or see this region's nucleotide sequence