Experiment: biofilm; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS04000 and LRK53_RS04005 are separated by 31 nucleotides LRK53_RS04005 and LRK53_RS04010 are separated by 204 nucleotides
LRK53_RS04000: LRK53_RS04000 - IS5 family transposase, at 933,636 to 934,766
_RS04000
LRK53_RS04005: LRK53_RS04005 - DegV family protein, at 934,798 to 935,742
_RS04005
LRK53_RS04010: LRK53_RS04010 - AMP nucleosidase, at 935,947 to 936,738
_RS04010
Position (kb) 934
935
936 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 934.936 kb on - strand, within LRK53_RS04005 at 934.937 kb on + strand, within LRK53_RS04005 at 934.937 kb on + strand, within LRK53_RS04005 at 934.937 kb on + strand, within LRK53_RS04005 at 934.938 kb on - strand, within LRK53_RS04005 at 934.938 kb on - strand, within LRK53_RS04005 at 934.938 kb on - strand, within LRK53_RS04005 at 934.938 kb on - strand, within LRK53_RS04005 at 934.938 kb on - strand, within LRK53_RS04005 at 934.938 kb on - strand, within LRK53_RS04005 at 934.938 kb on - strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.977 kb on - strand, within LRK53_RS04005 at 934.977 kb on - strand, within LRK53_RS04005 at 934.977 kb on - strand, within LRK53_RS04005 at 934.977 kb on - strand, within LRK53_RS04005 at 934.977 kb on - strand, within LRK53_RS04005 at 934.977 kb on - strand, within LRK53_RS04005 at 935.031 kb on - strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.228 kb on + strand, within LRK53_RS04005 at 935.228 kb on + strand, within LRK53_RS04005 at 935.228 kb on + strand, within LRK53_RS04005 at 935.228 kb on + strand, within LRK53_RS04005 at 935.228 kb on + strand, within LRK53_RS04005 at 935.228 kb on + strand, within LRK53_RS04005 at 935.228 kb on + strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.405 kb on + strand, within LRK53_RS04005 at 935.405 kb on + strand, within LRK53_RS04005 at 935.405 kb on + strand, within LRK53_RS04005 at 935.405 kb on + strand, within LRK53_RS04005 at 935.406 kb on - strand, within LRK53_RS04005 at 935.406 kb on - strand, within LRK53_RS04005 at 935.406 kb on - strand, within LRK53_RS04005 at 935.406 kb on - strand, within LRK53_RS04005 at 935.406 kb on - strand, within LRK53_RS04005 at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.797 kb on - strand at 935.874 kb on + strand at 935.874 kb on + strand at 935.874 kb on + strand at 935.875 kb on - strand at 935.875 kb on - strand at 935.875 kb on - strand at 935.875 kb on - strand at 936.049 kb on + strand, within LRK53_RS04010 at 936.049 kb on + strand, within LRK53_RS04010 at 936.049 kb on + strand, within LRK53_RS04010 at 936.049 kb on + strand, within LRK53_RS04010 at 936.050 kb on - strand, within LRK53_RS04010 at 936.086 kb on + strand, within LRK53_RS04010 at 936.086 kb on + strand, within LRK53_RS04010 at 936.086 kb on + strand, within LRK53_RS04010 at 936.086 kb on + strand, within LRK53_RS04010 at 936.086 kb on + strand, within LRK53_RS04010 at 936.086 kb on + strand, within LRK53_RS04010 at 936.086 kb on + strand, within LRK53_RS04010 at 936.313 kb on + strand, within LRK53_RS04010 at 936.313 kb on + strand, within LRK53_RS04010 at 936.313 kb on + strand, within LRK53_RS04010 at 936.314 kb on - strand, within LRK53_RS04010 at 936.314 kb on - strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.463 kb on + strand, within LRK53_RS04010 at 936.463 kb on + strand, within LRK53_RS04010 at 936.463 kb on + strand, within LRK53_RS04010 at 936.464 kb on - strand, within LRK53_RS04010 at 936.464 kb on - strand, within LRK53_RS04010 at 936.464 kb on - strand, within LRK53_RS04010 at 936.464 kb on - strand, within LRK53_RS04010 at 936.464 kb on - strand, within LRK53_RS04010 at 936.464 kb on - strand, within LRK53_RS04010
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; remove 934,936 - LRK53_RS04005 0.15 -1.1 934,937 + LRK53_RS04005 0.15 -0.2 934,937 + LRK53_RS04005 0.15 +0.7 934,937 + LRK53_RS04005 0.15 -1.0 934,938 - LRK53_RS04005 0.15 +0.1 934,938 - LRK53_RS04005 0.15 -0.1 934,938 - LRK53_RS04005 0.15 -2.0 934,938 - LRK53_RS04005 0.15 -0.5 934,938 - LRK53_RS04005 0.15 -1.4 934,938 - LRK53_RS04005 0.15 -3.6 934,938 - LRK53_RS04005 0.15 -0.6 934,976 + LRK53_RS04005 0.19 -0.8 934,976 + LRK53_RS04005 0.19 -0.6 934,976 + LRK53_RS04005 0.19 -1.5 934,976 + LRK53_RS04005 0.19 -0.3 934,976 + LRK53_RS04005 0.19 -1.4 934,976 + LRK53_RS04005 0.19 +0.2 934,976 + LRK53_RS04005 0.19 -0.3 934,976 + LRK53_RS04005 0.19 -1.4 934,976 + LRK53_RS04005 0.19 -1.4 934,976 + LRK53_RS04005 0.19 +1.4 934,976 + LRK53_RS04005 0.19 +1.3 934,977 - LRK53_RS04005 0.19 -1.1 934,977 - LRK53_RS04005 0.19 +0.8 934,977 - LRK53_RS04005 0.19 +0.6 934,977 - LRK53_RS04005 0.19 -0.6 934,977 - LRK53_RS04005 0.19 +1.0 934,977 - LRK53_RS04005 0.19 +0.2 935,031 - LRK53_RS04005 0.25 -1.1 935,222 + LRK53_RS04005 0.45 -1.1 935,222 + LRK53_RS04005 0.45 -0.1 935,222 + LRK53_RS04005 0.45 -1.4 935,222 + LRK53_RS04005 0.45 -1.9 935,222 + LRK53_RS04005 0.45 -0.9 935,222 + LRK53_RS04005 0.45 -1.6 935,222 + LRK53_RS04005 0.45 -0.9 935,222 + LRK53_RS04005 0.45 -1.7 935,222 + LRK53_RS04005 0.45 -2.4 935,222 + LRK53_RS04005 0.45 -1.9 935,222 + LRK53_RS04005 0.45 -0.8 935,223 - LRK53_RS04005 0.45 -0.6 935,223 - LRK53_RS04005 0.45 -1.2 935,223 - LRK53_RS04005 0.45 -0.2 935,223 - LRK53_RS04005 0.45 -0.2 935,223 - LRK53_RS04005 0.45 -0.3 935,223 - LRK53_RS04005 0.45 -2.0 935,223 - LRK53_RS04005 0.45 +0.6 935,223 - LRK53_RS04005 0.45 -1.9 935,223 - LRK53_RS04005 0.45 -0.4 935,223 - LRK53_RS04005 0.45 -1.4 935,223 - LRK53_RS04005 0.45 -0.7 935,223 - LRK53_RS04005 0.45 -2.3 935,223 - LRK53_RS04005 0.45 -0.9 935,223 - LRK53_RS04005 0.45 +1.3 935,228 + LRK53_RS04005 0.46 -2.6 935,228 + LRK53_RS04005 0.46 -2.3 935,228 + LRK53_RS04005 0.46 -2.7 935,228 + LRK53_RS04005 0.46 -0.9 935,228 + LRK53_RS04005 0.46 -1.3 935,228 + LRK53_RS04005 0.46 -0.2 935,228 + LRK53_RS04005 0.46 -0.7 935,229 - LRK53_RS04005 0.46 -0.2 935,229 - LRK53_RS04005 0.46 -1.7 935,229 - LRK53_RS04005 0.46 -1.7 935,229 - LRK53_RS04005 0.46 -1.7 935,229 - LRK53_RS04005 0.46 -1.3 935,229 - LRK53_RS04005 0.46 -0.7 935,229 - LRK53_RS04005 0.46 -1.7 935,229 - LRK53_RS04005 0.46 +0.5 935,229 - LRK53_RS04005 0.46 -1.1 935,405 + LRK53_RS04005 0.64 -1.1 935,405 + LRK53_RS04005 0.64 -0.1 935,405 + LRK53_RS04005 0.64 -0.1 935,405 + LRK53_RS04005 0.64 +0.2 935,406 - LRK53_RS04005 0.64 +0.6 935,406 - LRK53_RS04005 0.64 -0.0 935,406 - LRK53_RS04005 0.64 -2.4 935,406 - LRK53_RS04005 0.64 -0.6 935,406 - LRK53_RS04005 0.64 -0.7 935,779 + -3.5 935,779 + +1.3 935,779 + +1.7 935,779 + -1.7 935,779 + +0.1 935,779 + +0.7 935,779 + +0.3 935,779 + +0.4 935,779 + -1.1 935,779 + -1.0 935,779 + -0.8 935,779 + -1.7 935,779 + -1.2 935,779 + -0.3 935,779 + +0.4 935,779 + -1.3 935,779 + +0.8 935,779 + +0.0 935,779 + -0.6 935,779 + -2.3 935,779 + -0.8 935,779 + +0.6 935,780 - +0.1 935,780 - -1.2 935,780 - +0.0 935,780 - +1.3 935,780 - -0.9 935,780 - -1.9 935,780 - -1.3 935,780 - -1.4 935,780 - +0.6 935,780 - -1.9 935,780 - -2.0 935,780 - -1.3 935,780 - -1.6 935,780 - -0.3 935,780 - -0.7 935,780 - +1.2 935,780 - +1.1 935,780 - +0.0 935,780 - -1.9 935,780 - -0.4 935,780 - +0.4 935,797 - -0.1 935,874 + -0.6 935,874 + +0.3 935,874 + -1.9 935,875 - -0.4 935,875 - -0.6 935,875 - -2.2 935,875 - -1.1 936,049 + LRK53_RS04010 0.13 +0.6 936,049 + LRK53_RS04010 0.13 +0.3 936,049 + LRK53_RS04010 0.13 -0.4 936,049 + LRK53_RS04010 0.13 -1.3 936,050 - LRK53_RS04010 0.13 +0.5 936,086 + LRK53_RS04010 0.18 -0.6 936,086 + LRK53_RS04010 0.18 +0.0 936,086 + LRK53_RS04010 0.18 +1.9 936,086 + LRK53_RS04010 0.18 +0.8 936,086 + LRK53_RS04010 0.18 -0.4 936,086 + LRK53_RS04010 0.18 +2.1 936,086 + LRK53_RS04010 0.18 +0.6 936,313 + LRK53_RS04010 0.46 -0.9 936,313 + LRK53_RS04010 0.46 +0.4 936,313 + LRK53_RS04010 0.46 +2.2 936,314 - LRK53_RS04010 0.46 -2.6 936,314 - LRK53_RS04010 0.46 -0.4 936,415 + LRK53_RS04010 0.59 -1.1 936,415 + LRK53_RS04010 0.59 -2.2 936,415 + LRK53_RS04010 0.59 -0.5 936,415 + LRK53_RS04010 0.59 -0.4 936,415 + LRK53_RS04010 0.59 -1.4 936,415 + LRK53_RS04010 0.59 +1.3 936,415 + LRK53_RS04010 0.59 -0.6 936,415 + LRK53_RS04010 0.59 +1.0 936,415 + LRK53_RS04010 0.59 -0.6 936,416 - LRK53_RS04010 0.59 +0.4 936,416 - LRK53_RS04010 0.59 -0.9 936,416 - LRK53_RS04010 0.59 -1.7 936,416 - LRK53_RS04010 0.59 -1.0 936,416 - LRK53_RS04010 0.59 -3.3 936,416 - LRK53_RS04010 0.59 -0.7 936,416 - LRK53_RS04010 0.59 -0.8 936,416 - LRK53_RS04010 0.59 -0.7 936,463 + LRK53_RS04010 0.65 +0.4 936,463 + LRK53_RS04010 0.65 -1.0 936,463 + LRK53_RS04010 0.65 +1.3 936,464 - LRK53_RS04010 0.65 +0.1 936,464 - LRK53_RS04010 0.65 +0.9 936,464 - LRK53_RS04010 0.65 -0.7 936,464 - LRK53_RS04010 0.65 -1.0 936,464 - LRK53_RS04010 0.65 -0.6 936,464 - LRK53_RS04010 0.65 -0.6
Or see this region's nucleotide sequence