Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03810

Experiment: biofilm; Day1; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03800 and LRK53_RS03805 overlap by 4 nucleotidesLRK53_RS03805 and LRK53_RS03810 are separated by 4 nucleotidesLRK53_RS03810 and LRK53_RS03815 overlap by 4 nucleotidesLRK53_RS03815 and LRK53_RS03820 overlap by 4 nucleotides LRK53_RS03800: LRK53_RS03800 - FAD-dependent oxidoreductase, at 892,846 to 893,841 _RS03800 LRK53_RS03805: LRK53_RS03805 - sulfur carrier protein ThiS, at 893,838 to 894,032 _RS03805 LRK53_RS03810: LRK53_RS03810 - thiazole synthase, at 894,037 to 894,816 _RS03810 LRK53_RS03815: LRK53_RS03815 - thiamine phosphate synthase, at 894,813 to 895,421 _RS03815 LRK53_RS03820: LRK53_RS03820 - ThiF family adenylyltransferase, at 895,418 to 896,395 _RS03820 Position (kb) 894 895Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 893.521 kb on + strand, within LRK53_RS03800at 893.521 kb on + strand, within LRK53_RS03800at 893.521 kb on + strand, within LRK53_RS03800at 893.521 kb on + strand, within LRK53_RS03800at 893.521 kb on + strand, within LRK53_RS03800at 893.521 kb on + strand, within LRK53_RS03800at 893.521 kb on + strand, within LRK53_RS03800at 893.521 kb on + strand, within LRK53_RS03800at 893.521 kb on + strand, within LRK53_RS03800at 893.521 kb on + strand, within LRK53_RS03800at 893.522 kb on - strand, within LRK53_RS03800at 893.522 kb on - strand, within LRK53_RS03800at 893.522 kb on - strand, within LRK53_RS03800at 893.522 kb on - strand, within LRK53_RS03800at 893.522 kb on - strand, within LRK53_RS03800at 893.522 kb on - strand, within LRK53_RS03800at 893.788 kb on + strandat 893.788 kb on + strandat 893.788 kb on + strandat 893.789 kb on - strandat 893.789 kb on - strandat 894.030 kb on + strandat 894.030 kb on + strandat 894.030 kb on + strandat 894.030 kb on + strandat 894.030 kb on + strandat 894.030 kb on + strandat 894.030 kb on + strandat 894.031 kb on - strandat 894.055 kb on + strandat 894.101 kb on - strandat 894.101 kb on - strandat 894.161 kb on + strand, within LRK53_RS03810at 894.161 kb on + strand, within LRK53_RS03810at 894.162 kb on - strand, within LRK53_RS03810at 894.162 kb on - strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.430 kb on + strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.431 kb on - strand, within LRK53_RS03810at 894.640 kb on + strand, within LRK53_RS03810at 894.640 kb on + strand, within LRK53_RS03810at 894.640 kb on + strand, within LRK53_RS03810at 894.641 kb on - strand, within LRK53_RS03810at 894.641 kb on - strand, within LRK53_RS03810at 894.834 kb on + strandat 894.834 kb on + strandat 894.835 kb on - strandat 894.835 kb on - strandat 894.835 kb on - strandat 895.032 kb on + strand, within LRK53_RS03815at 895.032 kb on + strand, within LRK53_RS03815at 895.032 kb on + strand, within LRK53_RS03815at 895.032 kb on + strand, within LRK53_RS03815at 895.032 kb on + strand, within LRK53_RS03815at 895.032 kb on + strand, within LRK53_RS03815at 895.033 kb on - strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.161 kb on + strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.162 kb on - strand, within LRK53_RS03815at 895.626 kb on - strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.698 kb on + strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.699 kb on - strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.802 kb on + strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820at 895.803 kb on - strand, within LRK53_RS03820

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM;
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893,521 + LRK53_RS03800 0.68 +0.0
893,521 + LRK53_RS03800 0.68 +0.2
893,521 + LRK53_RS03800 0.68 -0.2
893,521 + LRK53_RS03800 0.68 +0.0
893,521 + LRK53_RS03800 0.68 +0.5
893,521 + LRK53_RS03800 0.68 -1.9
893,521 + LRK53_RS03800 0.68 -1.3
893,521 + LRK53_RS03800 0.68 -1.6
893,521 + LRK53_RS03800 0.68 -0.3
893,521 + LRK53_RS03800 0.68 -1.7
893,522 - LRK53_RS03800 0.68 -1.0
893,522 - LRK53_RS03800 0.68 +0.1
893,522 - LRK53_RS03800 0.68 -0.6
893,522 - LRK53_RS03800 0.68 +0.5
893,522 - LRK53_RS03800 0.68 -1.5
893,522 - LRK53_RS03800 0.68 -2.7
893,788 + -1.6
893,788 + -1.1
893,788 + -0.8
893,789 - -1.2
893,789 - -1.0
894,030 + +0.1
894,030 + -0.3
894,030 + +0.6
894,030 + -0.5
894,030 + -2.0
894,030 + -0.5
894,030 + -0.2
894,031 - -2.4
894,055 + -0.9
894,101 - -0.0
894,101 - -2.4
894,161 + LRK53_RS03810 0.16 -1.4
894,161 + LRK53_RS03810 0.16 +0.0
894,162 - LRK53_RS03810 0.16 -1.3
894,162 - LRK53_RS03810 0.16 -1.0
894,430 + LRK53_RS03810 0.50 -0.6
894,430 + LRK53_RS03810 0.50 +0.6
894,430 + LRK53_RS03810 0.50 -2.1
894,430 + LRK53_RS03810 0.50 -1.1
894,430 + LRK53_RS03810 0.50 -1.7
894,430 + LRK53_RS03810 0.50 -1.6
894,431 - LRK53_RS03810 0.51 +0.9
894,431 - LRK53_RS03810 0.51 -0.6
894,431 - LRK53_RS03810 0.51 -1.5
894,431 - LRK53_RS03810 0.51 +0.5
894,431 - LRK53_RS03810 0.51 -1.0
894,431 - LRK53_RS03810 0.51 -0.4
894,640 + LRK53_RS03810 0.77 -3.3
894,640 + LRK53_RS03810 0.77 -0.7
894,640 + LRK53_RS03810 0.77 -1.4
894,641 - LRK53_RS03810 0.77 -0.9
894,641 - LRK53_RS03810 0.77 -0.9
894,834 + -0.8
894,834 + -2.3
894,835 - +0.9
894,835 - -0.2
894,835 - +0.7
895,032 + LRK53_RS03815 0.36 -1.0
895,032 + LRK53_RS03815 0.36 -1.7
895,032 + LRK53_RS03815 0.36 +0.5
895,032 + LRK53_RS03815 0.36 +0.4
895,032 + LRK53_RS03815 0.36 -1.1
895,032 + LRK53_RS03815 0.36 -1.3
895,033 - LRK53_RS03815 0.36 -0.5
895,161 + LRK53_RS03815 0.57 -0.9
895,161 + LRK53_RS03815 0.57 -0.6
895,161 + LRK53_RS03815 0.57 -1.5
895,161 + LRK53_RS03815 0.57 +0.0
895,161 + LRK53_RS03815 0.57 +1.9
895,161 + LRK53_RS03815 0.57 -1.0
895,161 + LRK53_RS03815 0.57 -0.2
895,161 + LRK53_RS03815 0.57 +0.6
895,161 + LRK53_RS03815 0.57 -1.0
895,161 + LRK53_RS03815 0.57 -0.7
895,161 + LRK53_RS03815 0.57 +0.3
895,162 - LRK53_RS03815 0.57 -0.5
895,162 - LRK53_RS03815 0.57 -0.7
895,162 - LRK53_RS03815 0.57 -0.4
895,162 - LRK53_RS03815 0.57 +0.0
895,162 - LRK53_RS03815 0.57 -0.6
895,162 - LRK53_RS03815 0.57 -0.6
895,162 - LRK53_RS03815 0.57 -1.1
895,162 - LRK53_RS03815 0.57 -0.3
895,162 - LRK53_RS03815 0.57 +0.3
895,162 - LRK53_RS03815 0.57 -1.0
895,162 - LRK53_RS03815 0.57 +0.2
895,626 - LRK53_RS03820 0.21 -0.9
895,698 + LRK53_RS03820 0.29 -1.0
895,698 + LRK53_RS03820 0.29 +0.7
895,698 + LRK53_RS03820 0.29 -2.1
895,698 + LRK53_RS03820 0.29 -1.6
895,698 + LRK53_RS03820 0.29 -1.3
895,698 + LRK53_RS03820 0.29 -0.3
895,698 + LRK53_RS03820 0.29 +1.2
895,698 + LRK53_RS03820 0.29 +0.9
895,698 + LRK53_RS03820 0.29 -1.6
895,699 - LRK53_RS03820 0.29 -0.7
895,699 - LRK53_RS03820 0.29 -1.6
895,699 - LRK53_RS03820 0.29 -2.1
895,699 - LRK53_RS03820 0.29 -0.6
895,699 - LRK53_RS03820 0.29 +0.0
895,699 - LRK53_RS03820 0.29 -1.2
895,699 - LRK53_RS03820 0.29 +0.5
895,699 - LRK53_RS03820 0.29 -0.7
895,802 + LRK53_RS03820 0.39 +0.6
895,802 + LRK53_RS03820 0.39 -0.2
895,802 + LRK53_RS03820 0.39 -0.7
895,802 + LRK53_RS03820 0.39 -2.0
895,802 + LRK53_RS03820 0.39 +0.5
895,802 + LRK53_RS03820 0.39 -0.7
895,802 + LRK53_RS03820 0.39 -1.4
895,802 + LRK53_RS03820 0.39 -0.7
895,802 + LRK53_RS03820 0.39 -2.1
895,802 + LRK53_RS03820 0.39 -0.3
895,802 + LRK53_RS03820 0.39 -0.0
895,802 + LRK53_RS03820 0.39 -0.5
895,803 - LRK53_RS03820 0.39 -0.2
895,803 - LRK53_RS03820 0.39 -3.5
895,803 - LRK53_RS03820 0.39 -1.0
895,803 - LRK53_RS03820 0.39 -3.1
895,803 - LRK53_RS03820 0.39 +0.0
895,803 - LRK53_RS03820 0.39 +1.5
895,803 - LRK53_RS03820 0.39 -1.3
895,803 - LRK53_RS03820 0.39 +1.3

Or see this region's nucleotide sequence