Experiment: biofilm; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03425 and LRK53_RS03430 are separated by 142 nucleotides LRK53_RS03430 and LRK53_RS03435 are separated by 153 nucleotides LRK53_RS03435 and LRK53_RS03440 are separated by 3 nucleotides
LRK53_RS03425: LRK53_RS03425 - insulinase family protein, at 809,147 to 812,008
_RS03425
LRK53_RS03430: LRK53_RS03430 - DUF4156 domain-containing protein, at 812,151 to 812,549
_RS03430
LRK53_RS03435: LRK53_RS03435 - MarR family transcriptional regulator, at 812,703 to 813,197
_RS03435
LRK53_RS03440: LRK53_RS03440 - FUSC family protein, at 813,201 to 815,330
_RS03440
Position (kb) 812
813
814 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 811.748 kb on + strand at 811.748 kb on + strand at 811.748 kb on + strand at 811.749 kb on - strand at 811.749 kb on - strand at 811.749 kb on - strand at 811.796 kb on + strand at 811.796 kb on + strand at 811.796 kb on + strand at 811.796 kb on + strand at 811.796 kb on + strand at 811.797 kb on - strand at 811.797 kb on - strand at 811.797 kb on - strand at 811.814 kb on + strand at 811.814 kb on + strand at 811.814 kb on + strand at 811.977 kb on + strand at 811.977 kb on + strand at 811.977 kb on + strand at 811.978 kb on - strand at 811.978 kb on - strand at 811.978 kb on - strand at 811.978 kb on - strand at 811.978 kb on - strand at 812.084 kb on + strand at 812.451 kb on + strand, within LRK53_RS03430 at 812.640 kb on + strand at 812.641 kb on - strand at 812.641 kb on - strand at 812.645 kb on + strand at 812.645 kb on + strand at 812.645 kb on + strand at 812.645 kb on + strand at 812.646 kb on - strand at 812.646 kb on - strand at 812.649 kb on + strand at 812.650 kb on - strand at 812.650 kb on - strand at 812.650 kb on - strand at 812.650 kb on - strand at 812.650 kb on - strand at 812.650 kb on - strand at 812.650 kb on - strand at 812.651 kb on + strand at 812.652 kb on - strand at 812.660 kb on + strand at 812.660 kb on + strand at 812.660 kb on + strand at 812.661 kb on - strand at 812.664 kb on + strand at 812.672 kb on + strand at 812.681 kb on + strand at 812.682 kb on - strand at 812.689 kb on - strand at 812.689 kb on - strand at 812.689 kb on - strand at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.871 kb on + strand, within LRK53_RS03435 at 812.871 kb on + strand, within LRK53_RS03435 at 812.871 kb on + strand, within LRK53_RS03435 at 812.871 kb on + strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.892 kb on + strand, within LRK53_RS03435 at 812.892 kb on + strand, within LRK53_RS03435 at 812.892 kb on + strand, within LRK53_RS03435 at 812.892 kb on + strand, within LRK53_RS03435 at 812.892 kb on + strand, within LRK53_RS03435 at 812.893 kb on - strand, within LRK53_RS03435 at 812.893 kb on - strand, within LRK53_RS03435 at 812.893 kb on - strand, within LRK53_RS03435 at 812.893 kb on - strand, within LRK53_RS03435 at 812.893 kb on - strand, within LRK53_RS03435 at 812.893 kb on - strand, within LRK53_RS03435 at 812.893 kb on - strand, within LRK53_RS03435 at 812.907 kb on + strand, within LRK53_RS03435 at 812.908 kb on - strand, within LRK53_RS03435 at 812.908 kb on - strand, within LRK53_RS03435 at 813.318 kb on + strand at 813.318 kb on + strand at 813.318 kb on + strand at 813.318 kb on + strand at 813.318 kb on + strand at 813.318 kb on + strand at 813.318 kb on + strand at 813.318 kb on + strand at 813.319 kb on - strand at 813.319 kb on - strand at 813.319 kb on - strand at 813.319 kb on - strand at 813.319 kb on - strand at 813.432 kb on + strand, within LRK53_RS03440 at 813.432 kb on + strand, within LRK53_RS03440 at 813.530 kb on - strand, within LRK53_RS03440 at 813.565 kb on - strand, within LRK53_RS03440 at 813.582 kb on + strand, within LRK53_RS03440 at 813.582 kb on + strand, within LRK53_RS03440 at 813.583 kb on - strand, within LRK53_RS03440 at 813.603 kb on + strand, within LRK53_RS03440 at 813.849 kb on + strand, within LRK53_RS03440 at 813.849 kb on + strand, within LRK53_RS03440 at 813.849 kb on + strand, within LRK53_RS03440 at 813.850 kb on - strand, within LRK53_RS03440 at 813.850 kb on - strand, within LRK53_RS03440 at 813.850 kb on - strand, within LRK53_RS03440 at 813.850 kb on - strand, within LRK53_RS03440 at 813.850 kb on - strand, within LRK53_RS03440 at 813.850 kb on - strand, within LRK53_RS03440 at 813.963 kb on + strand, within LRK53_RS03440 at 813.963 kb on + strand, within LRK53_RS03440 at 813.963 kb on + strand, within LRK53_RS03440 at 813.963 kb on + strand, within LRK53_RS03440 at 813.963 kb on + strand, within LRK53_RS03440 at 813.963 kb on + strand, within LRK53_RS03440 at 813.963 kb on + strand, within LRK53_RS03440 at 813.963 kb on + strand, within LRK53_RS03440 at 813.963 kb on + strand, within LRK53_RS03440 at 813.963 kb on + strand, within LRK53_RS03440 at 813.963 kb on + strand, within LRK53_RS03440 at 813.963 kb on + strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 813.964 kb on - strand, within LRK53_RS03440 at 814.062 kb on + strand, within LRK53_RS03440 at 814.062 kb on + strand, within LRK53_RS03440 at 814.062 kb on + strand, within LRK53_RS03440 at 814.063 kb on - strand, within LRK53_RS03440
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; remove 811,748 + -2.2 811,748 + -1.3 811,748 + -3.0 811,749 - -0.8 811,749 - -0.7 811,749 - -0.9 811,796 + +0.1 811,796 + -1.5 811,796 + -2.6 811,796 + +0.3 811,796 + +0.6 811,797 - -1.3 811,797 - -1.3 811,797 - +0.9 811,814 + -1.3 811,814 + -1.7 811,814 + -0.6 811,977 + -1.0 811,977 + +0.3 811,977 + +1.9 811,978 - -2.8 811,978 - -0.6 811,978 - +0.1 811,978 - -0.8 811,978 - -3.2 812,084 + +1.1 812,451 + LRK53_RS03430 0.75 -0.8 812,640 + +0.4 812,641 - -1.0 812,641 - -0.7 812,645 + -0.7 812,645 + -0.1 812,645 + -2.2 812,645 + -0.7 812,646 - -1.1 812,646 - +0.6 812,649 + -1.1 812,650 - -1.3 812,650 - -1.0 812,650 - -1.3 812,650 - -0.1 812,650 - -1.2 812,650 - -0.8 812,650 - -0.4 812,651 + -0.3 812,652 - -1.0 812,660 + -1.0 812,660 + +0.9 812,660 + +0.7 812,661 - -0.2 812,664 + -1.6 812,672 + +0.6 812,681 + +1.5 812,682 - -2.6 812,689 - -0.5 812,689 - +0.9 812,689 - -1.1 812,808 + LRK53_RS03435 0.21 -0.2 812,808 + LRK53_RS03435 0.21 +0.2 812,808 + LRK53_RS03435 0.21 -0.2 812,808 + LRK53_RS03435 0.21 -0.7 812,808 + LRK53_RS03435 0.21 -0.4 812,808 + LRK53_RS03435 0.21 -0.9 812,808 + LRK53_RS03435 0.21 -2.0 812,808 + LRK53_RS03435 0.21 -2.0 812,808 + LRK53_RS03435 0.21 -0.4 812,809 - LRK53_RS03435 0.21 -0.6 812,809 - LRK53_RS03435 0.21 -0.2 812,809 - LRK53_RS03435 0.21 +0.5 812,809 - LRK53_RS03435 0.21 -2.2 812,809 - LRK53_RS03435 0.21 +0.6 812,809 - LRK53_RS03435 0.21 -0.5 812,809 - LRK53_RS03435 0.21 +0.9 812,809 - LRK53_RS03435 0.21 -0.1 812,809 - LRK53_RS03435 0.21 -0.3 812,809 - LRK53_RS03435 0.21 -1.0 812,809 - LRK53_RS03435 0.21 +1.0 812,809 - LRK53_RS03435 0.21 +0.6 812,809 - LRK53_RS03435 0.21 -0.7 812,871 + LRK53_RS03435 0.34 -0.1 812,871 + LRK53_RS03435 0.34 +0.7 812,871 + LRK53_RS03435 0.34 -0.9 812,871 + LRK53_RS03435 0.34 -0.2 812,872 - LRK53_RS03435 0.34 -1.4 812,872 - LRK53_RS03435 0.34 +0.2 812,872 - LRK53_RS03435 0.34 -0.9 812,872 - LRK53_RS03435 0.34 -1.6 812,872 - LRK53_RS03435 0.34 +0.2 812,872 - LRK53_RS03435 0.34 -1.7 812,872 - LRK53_RS03435 0.34 +0.6 812,872 - LRK53_RS03435 0.34 +1.0 812,872 - LRK53_RS03435 0.34 -0.4 812,892 + LRK53_RS03435 0.38 -0.7 812,892 + LRK53_RS03435 0.38 -0.5 812,892 + LRK53_RS03435 0.38 +1.2 812,892 + LRK53_RS03435 0.38 -0.9 812,892 + LRK53_RS03435 0.38 +1.4 812,893 - LRK53_RS03435 0.38 -0.6 812,893 - LRK53_RS03435 0.38 +0.5 812,893 - LRK53_RS03435 0.38 -0.4 812,893 - LRK53_RS03435 0.38 -0.3 812,893 - LRK53_RS03435 0.38 +1.2 812,893 - LRK53_RS03435 0.38 -1.7 812,893 - LRK53_RS03435 0.38 -1.4 812,907 + LRK53_RS03435 0.41 +0.4 812,908 - LRK53_RS03435 0.41 -2.4 812,908 - LRK53_RS03435 0.41 -0.1 813,318 + -0.4 813,318 + -1.1 813,318 + -0.8 813,318 + -1.0 813,318 + +0.4 813,318 + -0.6 813,318 + -1.7 813,318 + -0.4 813,319 - -1.5 813,319 - +1.5 813,319 - +1.0 813,319 - -0.5 813,319 - +0.6 813,432 + LRK53_RS03440 0.11 -0.2 813,432 + LRK53_RS03440 0.11 -0.8 813,530 - LRK53_RS03440 0.15 -0.8 813,565 - LRK53_RS03440 0.17 -0.8 813,582 + LRK53_RS03440 0.18 -1.6 813,582 + LRK53_RS03440 0.18 -0.5 813,583 - LRK53_RS03440 0.18 -1.2 813,603 + LRK53_RS03440 0.19 +0.6 813,849 + LRK53_RS03440 0.30 -1.8 813,849 + LRK53_RS03440 0.30 -0.5 813,849 + LRK53_RS03440 0.30 -1.7 813,850 - LRK53_RS03440 0.30 -0.1 813,850 - LRK53_RS03440 0.30 -0.6 813,850 - LRK53_RS03440 0.30 -1.9 813,850 - LRK53_RS03440 0.30 -2.4 813,850 - LRK53_RS03440 0.30 -1.8 813,850 - LRK53_RS03440 0.30 -1.0 813,963 + LRK53_RS03440 0.36 +0.3 813,963 + LRK53_RS03440 0.36 +0.2 813,963 + LRK53_RS03440 0.36 -0.6 813,963 + LRK53_RS03440 0.36 -0.5 813,963 + LRK53_RS03440 0.36 -1.0 813,963 + LRK53_RS03440 0.36 +1.1 813,963 + LRK53_RS03440 0.36 +1.5 813,963 + LRK53_RS03440 0.36 -3.5 813,963 + LRK53_RS03440 0.36 +1.3 813,963 + LRK53_RS03440 0.36 -0.5 813,963 + LRK53_RS03440 0.36 -1.3 813,963 + LRK53_RS03440 0.36 -0.8 813,964 - LRK53_RS03440 0.36 -1.5 813,964 - LRK53_RS03440 0.36 -0.2 813,964 - LRK53_RS03440 0.36 -1.2 813,964 - LRK53_RS03440 0.36 -0.2 813,964 - LRK53_RS03440 0.36 -0.3 813,964 - LRK53_RS03440 0.36 +0.5 813,964 - LRK53_RS03440 0.36 -0.5 813,964 - LRK53_RS03440 0.36 +0.1 813,964 - LRK53_RS03440 0.36 +1.0 813,964 - LRK53_RS03440 0.36 +2.5 813,964 - LRK53_RS03440 0.36 +0.2 813,964 - LRK53_RS03440 0.36 -1.3 813,964 - LRK53_RS03440 0.36 -1.6 813,964 - LRK53_RS03440 0.36 -0.4 813,964 - LRK53_RS03440 0.36 -3.2 813,964 - LRK53_RS03440 0.36 +0.6 813,964 - LRK53_RS03440 0.36 -1.6 814,062 + LRK53_RS03440 0.40 -1.8 814,062 + LRK53_RS03440 0.40 -0.5 814,062 + LRK53_RS03440 0.40 -0.8 814,063 - LRK53_RS03440 0.40 -1.5
Or see this region's nucleotide sequence