Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03115

Experiment: biofilm; Day1; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03110 and LRK53_RS03115 overlap by 4 nucleotidesLRK53_RS03115 and LRK53_RS03120 overlap by 4 nucleotides LRK53_RS03110: LRK53_RS03110 - 3-isopropylmalate dehydratase large subunit, at 726,163 to 727,575 _RS03110 LRK53_RS03115: LRK53_RS03115 - branched-chain amino acid transaminase, at 727,572 to 728,573 _RS03115 LRK53_RS03120: LRK53_RS03120 - 2-isopropylmalate synthase, at 728,570 to 730,204 _RS03120 Position (kb) 727 728 729Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 726.605 kb on + strand, within LRK53_RS03110at 726.605 kb on + strand, within LRK53_RS03110at 726.605 kb on + strand, within LRK53_RS03110at 726.605 kb on + strand, within LRK53_RS03110at 726.605 kb on + strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.606 kb on - strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.689 kb on + strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.690 kb on - strand, within LRK53_RS03110at 726.740 kb on + strand, within LRK53_RS03110at 726.741 kb on - strand, within LRK53_RS03110at 726.950 kb on + strand, within LRK53_RS03110at 726.951 kb on - strand, within LRK53_RS03110at 726.951 kb on - strand, within LRK53_RS03110at 727.337 kb on + strand, within LRK53_RS03110at 727.337 kb on + strand, within LRK53_RS03110at 727.338 kb on - strand, within LRK53_RS03110at 727.493 kb on + strandat 727.493 kb on + strandat 727.493 kb on + strandat 727.494 kb on - strandat 727.494 kb on - strandat 727.494 kb on - strandat 727.494 kb on - strandat 727.684 kb on + strand, within LRK53_RS03115at 727.684 kb on + strand, within LRK53_RS03115at 727.697 kb on + strand, within LRK53_RS03115at 727.843 kb on + strand, within LRK53_RS03115at 727.843 kb on + strand, within LRK53_RS03115at 727.843 kb on + strand, within LRK53_RS03115at 727.844 kb on - strand, within LRK53_RS03115at 727.844 kb on - strand, within LRK53_RS03115at 727.844 kb on - strand, within LRK53_RS03115at 727.844 kb on - strand, within LRK53_RS03115at 728.047 kb on + strand, within LRK53_RS03115at 728.092 kb on + strand, within LRK53_RS03115at 728.092 kb on + strand, within LRK53_RS03115at 728.092 kb on + strand, within LRK53_RS03115at 728.092 kb on + strand, within LRK53_RS03115at 728.092 kb on + strand, within LRK53_RS03115at 728.092 kb on + strand, within LRK53_RS03115at 728.093 kb on - strand, within LRK53_RS03115at 728.093 kb on - strand, within LRK53_RS03115at 728.093 kb on - strand, within LRK53_RS03115at 728.093 kb on - strand, within LRK53_RS03115at 728.093 kb on - strand, within LRK53_RS03115at 728.194 kb on + strand, within LRK53_RS03115at 728.194 kb on + strand, within LRK53_RS03115at 728.194 kb on + strand, within LRK53_RS03115at 728.194 kb on + strand, within LRK53_RS03115at 728.195 kb on - strand, within LRK53_RS03115at 728.195 kb on - strand, within LRK53_RS03115at 728.195 kb on - strand, within LRK53_RS03115at 728.195 kb on - strand, within LRK53_RS03115at 728.296 kb on + strand, within LRK53_RS03115at 728.296 kb on + strand, within LRK53_RS03115at 728.296 kb on + strand, within LRK53_RS03115at 728.296 kb on + strand, within LRK53_RS03115at 728.296 kb on + strand, within LRK53_RS03115at 728.296 kb on + strand, within LRK53_RS03115at 728.296 kb on + strand, within LRK53_RS03115at 728.297 kb on - strand, within LRK53_RS03115at 728.297 kb on - strand, within LRK53_RS03115at 728.297 kb on - strand, within LRK53_RS03115at 728.297 kb on - strand, within LRK53_RS03115at 728.297 kb on - strand, within LRK53_RS03115at 728.297 kb on - strand, within LRK53_RS03115at 728.362 kb on + strand, within LRK53_RS03115at 728.362 kb on + strand, within LRK53_RS03115at 728.363 kb on - strand, within LRK53_RS03115at 728.363 kb on - strand, within LRK53_RS03115at 728.363 kb on - strand, within LRK53_RS03115at 728.380 kb on + strand, within LRK53_RS03115at 728.380 kb on + strand, within LRK53_RS03115at 728.380 kb on + strand, within LRK53_RS03115at 728.381 kb on - strand, within LRK53_RS03115at 728.381 kb on - strand, within LRK53_RS03115at 728.432 kb on - strand, within LRK53_RS03115at 728.455 kb on + strand, within LRK53_RS03115at 728.456 kb on - strand, within LRK53_RS03115at 728.488 kb on + strandat 728.489 kb on - strandat 728.489 kb on - strandat 729.115 kb on + strand, within LRK53_RS03120at 729.115 kb on + strand, within LRK53_RS03120at 729.115 kb on + strand, within LRK53_RS03120at 729.115 kb on + strand, within LRK53_RS03120at 729.222 kb on + strand, within LRK53_RS03120at 729.222 kb on + strand, within LRK53_RS03120at 729.222 kb on + strand, within LRK53_RS03120at 729.222 kb on + strand, within LRK53_RS03120at 729.222 kb on + strand, within LRK53_RS03120at 729.223 kb on - strand, within LRK53_RS03120at 729.223 kb on - strand, within LRK53_RS03120at 729.223 kb on - strand, within LRK53_RS03120at 729.223 kb on - strand, within LRK53_RS03120at 729.223 kb on - strand, within LRK53_RS03120at 729.223 kb on - strand, within LRK53_RS03120at 729.223 kb on - strand, within LRK53_RS03120at 729.223 kb on - strand, within LRK53_RS03120at 729.354 kb on + strand, within LRK53_RS03120at 729.354 kb on + strand, within LRK53_RS03120at 729.355 kb on - strand, within LRK53_RS03120at 729.355 kb on - strand, within LRK53_RS03120

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM;
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726,605 + LRK53_RS03110 0.31 -1.1
726,605 + LRK53_RS03110 0.31 +1.5
726,605 + LRK53_RS03110 0.31 -1.6
726,605 + LRK53_RS03110 0.31 -1.6
726,605 + LRK53_RS03110 0.31 +0.4
726,606 - LRK53_RS03110 0.31 -1.4
726,606 - LRK53_RS03110 0.31 -2.4
726,606 - LRK53_RS03110 0.31 +0.3
726,606 - LRK53_RS03110 0.31 -1.8
726,606 - LRK53_RS03110 0.31 -0.8
726,606 - LRK53_RS03110 0.31 +0.3
726,606 - LRK53_RS03110 0.31 -0.3
726,606 - LRK53_RS03110 0.31 +0.6
726,606 - LRK53_RS03110 0.31 -0.2
726,689 + LRK53_RS03110 0.37 -0.8
726,689 + LRK53_RS03110 0.37 -0.6
726,689 + LRK53_RS03110 0.37 -1.4
726,689 + LRK53_RS03110 0.37 -0.9
726,689 + LRK53_RS03110 0.37 -1.1
726,689 + LRK53_RS03110 0.37 -0.8
726,689 + LRK53_RS03110 0.37 +0.3
726,689 + LRK53_RS03110 0.37 -2.5
726,690 - LRK53_RS03110 0.37 +2.4
726,690 - LRK53_RS03110 0.37 -1.5
726,690 - LRK53_RS03110 0.37 +0.3
726,690 - LRK53_RS03110 0.37 -0.5
726,690 - LRK53_RS03110 0.37 -0.9
726,690 - LRK53_RS03110 0.37 -1.3
726,690 - LRK53_RS03110 0.37 +1.1
726,690 - LRK53_RS03110 0.37 +0.1
726,740 + LRK53_RS03110 0.41 -0.3
726,741 - LRK53_RS03110 0.41 -0.9
726,950 + LRK53_RS03110 0.56 +0.2
726,951 - LRK53_RS03110 0.56 +2.1
726,951 - LRK53_RS03110 0.56 +0.7
727,337 + LRK53_RS03110 0.83 -0.4
727,337 + LRK53_RS03110 0.83 -1.5
727,338 - LRK53_RS03110 0.83 -1.9
727,493 + -1.3
727,493 + -3.4
727,493 + -0.2
727,494 - -1.6
727,494 - -1.2
727,494 - -0.7
727,494 - +1.6
727,684 + LRK53_RS03115 0.11 -0.5
727,684 + LRK53_RS03115 0.11 -0.2
727,697 + LRK53_RS03115 0.12 -0.2
727,843 + LRK53_RS03115 0.27 -0.4
727,843 + LRK53_RS03115 0.27 -0.7
727,843 + LRK53_RS03115 0.27 -1.4
727,844 - LRK53_RS03115 0.27 -0.3
727,844 - LRK53_RS03115 0.27 -0.9
727,844 - LRK53_RS03115 0.27 -1.9
727,844 - LRK53_RS03115 0.27 -0.7
728,047 + LRK53_RS03115 0.47 +0.1
728,092 + LRK53_RS03115 0.52 -1.4
728,092 + LRK53_RS03115 0.52 +0.1
728,092 + LRK53_RS03115 0.52 -0.2
728,092 + LRK53_RS03115 0.52 -2.4
728,092 + LRK53_RS03115 0.52 -0.9
728,092 + LRK53_RS03115 0.52 -0.7
728,093 - LRK53_RS03115 0.52 +1.3
728,093 - LRK53_RS03115 0.52 +2.1
728,093 - LRK53_RS03115 0.52 -1.6
728,093 - LRK53_RS03115 0.52 -0.5
728,093 - LRK53_RS03115 0.52 -1.7
728,194 + LRK53_RS03115 0.62 +0.3
728,194 + LRK53_RS03115 0.62 -0.4
728,194 + LRK53_RS03115 0.62 -1.7
728,194 + LRK53_RS03115 0.62 -1.9
728,195 - LRK53_RS03115 0.62 -2.2
728,195 - LRK53_RS03115 0.62 -1.0
728,195 - LRK53_RS03115 0.62 +0.5
728,195 - LRK53_RS03115 0.62 -0.5
728,296 + LRK53_RS03115 0.72 -0.6
728,296 + LRK53_RS03115 0.72 -1.4
728,296 + LRK53_RS03115 0.72 -0.8
728,296 + LRK53_RS03115 0.72 -1.4
728,296 + LRK53_RS03115 0.72 +0.1
728,296 + LRK53_RS03115 0.72 +0.5
728,296 + LRK53_RS03115 0.72 -0.8
728,297 - LRK53_RS03115 0.72 -0.5
728,297 - LRK53_RS03115 0.72 +0.8
728,297 - LRK53_RS03115 0.72 -1.1
728,297 - LRK53_RS03115 0.72 -2.6
728,297 - LRK53_RS03115 0.72 +1.1
728,297 - LRK53_RS03115 0.72 +0.4
728,362 + LRK53_RS03115 0.79 +0.4
728,362 + LRK53_RS03115 0.79 +0.2
728,363 - LRK53_RS03115 0.79 -1.5
728,363 - LRK53_RS03115 0.79 -1.8
728,363 - LRK53_RS03115 0.79 -1.4
728,380 + LRK53_RS03115 0.81 -0.5
728,380 + LRK53_RS03115 0.81 -0.8
728,380 + LRK53_RS03115 0.81 +1.1
728,381 - LRK53_RS03115 0.81 +0.8
728,381 - LRK53_RS03115 0.81 -0.4
728,432 - LRK53_RS03115 0.86 -1.1
728,455 + LRK53_RS03115 0.88 -0.8
728,456 - LRK53_RS03115 0.88 -2.7
728,488 + -0.4
728,489 - -0.5
728,489 - -0.2
729,115 + LRK53_RS03120 0.33 -2.3
729,115 + LRK53_RS03120 0.33 -0.9
729,115 + LRK53_RS03120 0.33 +0.6
729,115 + LRK53_RS03120 0.33 +1.8
729,222 + LRK53_RS03120 0.40 +0.6
729,222 + LRK53_RS03120 0.40 -1.0
729,222 + LRK53_RS03120 0.40 +2.2
729,222 + LRK53_RS03120 0.40 -0.4
729,222 + LRK53_RS03120 0.40 -2.4
729,223 - LRK53_RS03120 0.40 +0.1
729,223 - LRK53_RS03120 0.40 -0.8
729,223 - LRK53_RS03120 0.40 -1.9
729,223 - LRK53_RS03120 0.40 -1.6
729,223 - LRK53_RS03120 0.40 -1.6
729,223 - LRK53_RS03120 0.40 -0.5
729,223 - LRK53_RS03120 0.40 -1.3
729,223 - LRK53_RS03120 0.40 -0.1
729,354 + LRK53_RS03120 0.48 -1.7
729,354 + LRK53_RS03120 0.48 -1.7
729,355 - LRK53_RS03120 0.48 +0.1
729,355 - LRK53_RS03120 0.48 -0.5

Or see this region's nucleotide sequence