Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03085

Experiment: biofilm; Day1; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03075 and LRK53_RS03080 overlap by 4 nucleotidesLRK53_RS03080 and LRK53_RS03085 are separated by 166 nucleotidesLRK53_RS03085 and LRK53_RS03090 are separated by 149 nucleotides LRK53_RS03075: LRK53_RS03075 - threonine ammonia-lyase, biosynthetic, at 717,211 to 718,761 _RS03075 LRK53_RS03080: LRK53_RS03080 - acetolactate synthase small subunit, at 718,758 to 719,006 _RS03080 LRK53_RS03085: LRK53_RS03085 - biosynthetic-type acetolactate synthase large subunit, at 719,173 to 721,029 _RS03085 LRK53_RS03090: LRK53_RS03090 - ketol-acid reductoisomerase, at 721,179 to 722,192 _RS03090 Position (kb) 719 720 721 722Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 718.352 kb on + strand, within LRK53_RS03075at 718.352 kb on + strand, within LRK53_RS03075at 718.353 kb on - strand, within LRK53_RS03075at 718.353 kb on - strand, within LRK53_RS03075at 718.565 kb on + strand, within LRK53_RS03075at 718.566 kb on - strand, within LRK53_RS03075at 718.566 kb on - strand, within LRK53_RS03075at 718.566 kb on - strand, within LRK53_RS03075at 718.566 kb on - strand, within LRK53_RS03075at 718.566 kb on - strand, within LRK53_RS03075at 718.566 kb on - strand, within LRK53_RS03075at 718.566 kb on - strand, within LRK53_RS03075at 718.688 kb on + strandat 718.688 kb on + strandat 718.688 kb on + strandat 718.688 kb on + strandat 718.689 kb on - strandat 718.689 kb on - strandat 718.689 kb on - strandat 718.924 kb on + strand, within LRK53_RS03080at 718.925 kb on - strand, within LRK53_RS03080at 719.113 kb on - strandat 719.255 kb on + strandat 719.255 kb on + strandat 719.256 kb on - strandat 719.256 kb on - strandat 719.283 kb on - strandat 719.477 kb on + strand, within LRK53_RS03085at 719.477 kb on + strand, within LRK53_RS03085at 719.477 kb on + strand, within LRK53_RS03085at 719.477 kb on + strand, within LRK53_RS03085at 719.477 kb on + strand, within LRK53_RS03085at 719.477 kb on + strand, within LRK53_RS03085at 719.478 kb on - strand, within LRK53_RS03085at 719.478 kb on - strand, within LRK53_RS03085at 719.550 kb on - strand, within LRK53_RS03085at 719.550 kb on - strand, within LRK53_RS03085at 719.726 kb on + strand, within LRK53_RS03085at 719.726 kb on + strand, within LRK53_RS03085at 719.726 kb on + strand, within LRK53_RS03085at 719.726 kb on + strand, within LRK53_RS03085at 719.726 kb on + strand, within LRK53_RS03085at 719.727 kb on - strand, within LRK53_RS03085at 719.727 kb on - strand, within LRK53_RS03085at 719.727 kb on - strand, within LRK53_RS03085at 719.727 kb on - strand, within LRK53_RS03085at 719.846 kb on + strand, within LRK53_RS03085at 719.846 kb on + strand, within LRK53_RS03085at 719.847 kb on - strand, within LRK53_RS03085at 719.847 kb on - strand, within LRK53_RS03085at 719.847 kb on - strand, within LRK53_RS03085at 719.847 kb on - strand, within LRK53_RS03085at 719.847 kb on - strand, within LRK53_RS03085at 719.847 kb on - strand, within LRK53_RS03085at 719.847 kb on - strand, within LRK53_RS03085at 720.132 kb on - strand, within LRK53_RS03085at 720.132 kb on - strand, within LRK53_RS03085at 720.132 kb on - strand, within LRK53_RS03085at 720.299 kb on + strand, within LRK53_RS03085at 720.299 kb on + strand, within LRK53_RS03085at 720.300 kb on - strand, within LRK53_RS03085at 720.300 kb on - strand, within LRK53_RS03085at 720.736 kb on + strand, within LRK53_RS03085at 720.737 kb on - strand, within LRK53_RS03085at 720.875 kb on + strandat 720.875 kb on + strandat 720.875 kb on + strandat 720.875 kb on + strandat 720.875 kb on + strandat 720.937 kb on + strandat 720.938 kb on - strandat 720.938 kb on - strandat 720.938 kb on - strandat 720.938 kb on - strandat 721.306 kb on + strand, within LRK53_RS03090at 721.306 kb on + strand, within LRK53_RS03090at 721.307 kb on - strand, within LRK53_RS03090at 721.307 kb on - strand, within LRK53_RS03090at 721.307 kb on - strand, within LRK53_RS03090at 721.307 kb on - strand, within LRK53_RS03090at 721.307 kb on - strand, within LRK53_RS03090at 721.377 kb on + strand, within LRK53_RS03090at 721.377 kb on + strand, within LRK53_RS03090at 721.377 kb on + strand, within LRK53_RS03090at 721.377 kb on + strand, within LRK53_RS03090at 721.377 kb on + strand, within LRK53_RS03090at 721.377 kb on + strand, within LRK53_RS03090at 721.378 kb on - strand, within LRK53_RS03090at 721.378 kb on - strand, within LRK53_RS03090at 721.378 kb on - strand, within LRK53_RS03090at 721.378 kb on - strand, within LRK53_RS03090at 721.378 kb on - strand, within LRK53_RS03090at 721.433 kb on - strand, within LRK53_RS03090at 721.433 kb on - strand, within LRK53_RS03090at 721.433 kb on - strand, within LRK53_RS03090at 721.433 kb on - strand, within LRK53_RS03090at 721.441 kb on + strand, within LRK53_RS03090at 721.492 kb on + strand, within LRK53_RS03090at 721.493 kb on - strand, within LRK53_RS03090at 721.493 kb on - strand, within LRK53_RS03090at 721.534 kb on + strand, within LRK53_RS03090at 721.534 kb on + strand, within LRK53_RS03090at 721.534 kb on + strand, within LRK53_RS03090at 721.534 kb on + strand, within LRK53_RS03090at 721.534 kb on + strand, within LRK53_RS03090at 721.535 kb on - strand, within LRK53_RS03090at 721.535 kb on - strand, within LRK53_RS03090at 721.535 kb on - strand, within LRK53_RS03090at 721.535 kb on - strand, within LRK53_RS03090at 721.535 kb on - strand, within LRK53_RS03090at 721.535 kb on - strand, within LRK53_RS03090at 721.538 kb on - strand, within LRK53_RS03090at 721.538 kb on - strand, within LRK53_RS03090at 721.790 kb on - strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.942 kb on + strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.943 kb on - strand, within LRK53_RS03090at 721.945 kb on - strand, within LRK53_RS03090at 721.945 kb on - strand, within LRK53_RS03090

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM;
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718,352 + LRK53_RS03075 0.74 +1.2
718,352 + LRK53_RS03075 0.74 -0.8
718,353 - LRK53_RS03075 0.74 -2.6
718,353 - LRK53_RS03075 0.74 -0.8
718,565 + LRK53_RS03075 0.87 -0.5
718,566 - LRK53_RS03075 0.87 -0.5
718,566 - LRK53_RS03075 0.87 +0.8
718,566 - LRK53_RS03075 0.87 -2.1
718,566 - LRK53_RS03075 0.87 -1.3
718,566 - LRK53_RS03075 0.87 +1.8
718,566 - LRK53_RS03075 0.87 -1.4
718,566 - LRK53_RS03075 0.87 -0.5
718,688 + -2.5
718,688 + -1.2
718,688 + +0.0
718,688 + +0.2
718,689 - -1.7
718,689 - -0.4
718,689 - -0.2
718,924 + LRK53_RS03080 0.67 +0.9
718,925 - LRK53_RS03080 0.67 -0.7
719,113 - -0.3
719,255 + -1.1
719,255 + -2.9
719,256 - -0.7
719,256 - -1.0
719,283 - -2.5
719,477 + LRK53_RS03085 0.16 -0.8
719,477 + LRK53_RS03085 0.16 -2.8
719,477 + LRK53_RS03085 0.16 +1.3
719,477 + LRK53_RS03085 0.16 -1.8
719,477 + LRK53_RS03085 0.16 -0.4
719,477 + LRK53_RS03085 0.16 -0.1
719,478 - LRK53_RS03085 0.16 -0.7
719,478 - LRK53_RS03085 0.16 +0.4
719,550 - LRK53_RS03085 0.20 -0.8
719,550 - LRK53_RS03085 0.20 -1.0
719,726 + LRK53_RS03085 0.30 +0.1
719,726 + LRK53_RS03085 0.30 -3.6
719,726 + LRK53_RS03085 0.30 -2.0
719,726 + LRK53_RS03085 0.30 +0.3
719,726 + LRK53_RS03085 0.30 -0.4
719,727 - LRK53_RS03085 0.30 +0.6
719,727 - LRK53_RS03085 0.30 -1.3
719,727 - LRK53_RS03085 0.30 +0.1
719,727 - LRK53_RS03085 0.30 -1.1
719,846 + LRK53_RS03085 0.36 -1.3
719,846 + LRK53_RS03085 0.36 -1.3
719,847 - LRK53_RS03085 0.36 +0.8
719,847 - LRK53_RS03085 0.36 -2.3
719,847 - LRK53_RS03085 0.36 +0.6
719,847 - LRK53_RS03085 0.36 -0.4
719,847 - LRK53_RS03085 0.36 +0.0
719,847 - LRK53_RS03085 0.36 -0.2
719,847 - LRK53_RS03085 0.36 -2.8
720,132 - LRK53_RS03085 0.52 -0.9
720,132 - LRK53_RS03085 0.52 +0.6
720,132 - LRK53_RS03085 0.52 +0.7
720,299 + LRK53_RS03085 0.61 -1.6
720,299 + LRK53_RS03085 0.61 -0.7
720,300 - LRK53_RS03085 0.61 +0.3
720,300 - LRK53_RS03085 0.61 -2.1
720,736 + LRK53_RS03085 0.84 -1.9
720,737 - LRK53_RS03085 0.84 -1.0
720,875 + -0.9
720,875 + -0.4
720,875 + +0.9
720,875 + -1.0
720,875 + -0.8
720,937 + -0.3
720,938 - -0.4
720,938 - -0.8
720,938 - +0.4
720,938 - -0.4
721,306 + LRK53_RS03090 0.13 +1.1
721,306 + LRK53_RS03090 0.13 -0.9
721,307 - LRK53_RS03090 0.13 -1.1
721,307 - LRK53_RS03090 0.13 +1.5
721,307 - LRK53_RS03090 0.13 -1.0
721,307 - LRK53_RS03090 0.13 +0.9
721,307 - LRK53_RS03090 0.13 -1.4
721,377 + LRK53_RS03090 0.20 -3.3
721,377 + LRK53_RS03090 0.20 -1.0
721,377 + LRK53_RS03090 0.20 -1.2
721,377 + LRK53_RS03090 0.20 -2.0
721,377 + LRK53_RS03090 0.20 -2.2
721,377 + LRK53_RS03090 0.20 -2.0
721,378 - LRK53_RS03090 0.20 +0.8
721,378 - LRK53_RS03090 0.20 -0.8
721,378 - LRK53_RS03090 0.20 -0.4
721,378 - LRK53_RS03090 0.20 -0.2
721,378 - LRK53_RS03090 0.20 -0.2
721,433 - LRK53_RS03090 0.25 -1.0
721,433 - LRK53_RS03090 0.25 -1.5
721,433 - LRK53_RS03090 0.25 -0.2
721,433 - LRK53_RS03090 0.25 -2.0
721,441 + LRK53_RS03090 0.26 -0.2
721,492 + LRK53_RS03090 0.31 +0.1
721,493 - LRK53_RS03090 0.31 -0.8
721,493 - LRK53_RS03090 0.31 -1.7
721,534 + LRK53_RS03090 0.35 -0.5
721,534 + LRK53_RS03090 0.35 -0.2
721,534 + LRK53_RS03090 0.35 -1.5
721,534 + LRK53_RS03090 0.35 -1.1
721,534 + LRK53_RS03090 0.35 -0.2
721,535 - LRK53_RS03090 0.35 -3.1
721,535 - LRK53_RS03090 0.35 -1.4
721,535 - LRK53_RS03090 0.35 -0.2
721,535 - LRK53_RS03090 0.35 -0.9
721,535 - LRK53_RS03090 0.35 -1.2
721,535 - LRK53_RS03090 0.35 -1.7
721,538 - LRK53_RS03090 0.35 -1.0
721,538 - LRK53_RS03090 0.35 -0.8
721,790 - LRK53_RS03090 0.60 -0.5
721,942 + LRK53_RS03090 0.75 +1.9
721,942 + LRK53_RS03090 0.75 +0.2
721,942 + LRK53_RS03090 0.75 +0.0
721,942 + LRK53_RS03090 0.75 -0.3
721,942 + LRK53_RS03090 0.75 -1.3
721,942 + LRK53_RS03090 0.75 +0.4
721,942 + LRK53_RS03090 0.75 -0.2
721,942 + LRK53_RS03090 0.75 -3.2
721,942 + LRK53_RS03090 0.75 -3.2
721,942 + LRK53_RS03090 0.75 -0.4
721,942 + LRK53_RS03090 0.75 -1.0
721,942 + LRK53_RS03090 0.75 -2.0
721,942 + LRK53_RS03090 0.75 +0.6
721,942 + LRK53_RS03090 0.75 -2.1
721,942 + LRK53_RS03090 0.75 -1.0
721,943 - LRK53_RS03090 0.75 -0.8
721,943 - LRK53_RS03090 0.75 -0.6
721,943 - LRK53_RS03090 0.75 +0.6
721,943 - LRK53_RS03090 0.75 +1.9
721,943 - LRK53_RS03090 0.75 -0.4
721,943 - LRK53_RS03090 0.75 -1.7
721,943 - LRK53_RS03090 0.75 +0.0
721,943 - LRK53_RS03090 0.75 -2.9
721,943 - LRK53_RS03090 0.75 -1.9
721,943 - LRK53_RS03090 0.75 -1.6
721,943 - LRK53_RS03090 0.75 -1.5
721,943 - LRK53_RS03090 0.75 -1.5
721,943 - LRK53_RS03090 0.75 -0.6
721,943 - LRK53_RS03090 0.75 -1.2
721,945 - LRK53_RS03090 0.76 -0.9
721,945 - LRK53_RS03090 0.76 -1.5

Or see this region's nucleotide sequence