Experiment: biofilm; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02480 and LRK53_RS02485 are separated by 51 nucleotides LRK53_RS02485 and LRK53_RS02490 overlap by 4 nucleotides LRK53_RS02490 and LRK53_RS02495 are separated by 21 nucleotides
LRK53_RS02480: LRK53_RS02480 - glycosyltransferase family 2 protein, at 570,193 to 570,909
_RS02480
LRK53_RS02485: LRK53_RS02485 - hypothetical protein, at 570,961 to 571,155
_RS02485
LRK53_RS02490: LRK53_RS02490 - hypothetical protein, at 571,152 to 571,319
_RS02490
LRK53_RS02495: LRK53_RS02495 - hypothetical protein, at 571,341 to 572,099
_RS02495
Position (kb) 571
572
573 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 570.955 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.956 kb on - strand at 570.956 kb on - strand at 570.956 kb on - strand at 570.956 kb on - strand at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.016 kb on + strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.017 kb on - strand, within LRK53_RS02485 at 571.044 kb on - strand, within LRK53_RS02485 at 571.234 kb on - strand, within LRK53_RS02490 at 571.333 kb on + strand at 571.333 kb on + strand at 571.333 kb on + strand at 571.333 kb on + strand at 571.333 kb on + strand at 571.333 kb on + strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.334 kb on - strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.342 kb on + strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.343 kb on - strand at 571.356 kb on + strand at 571.357 kb on - strand at 571.357 kb on - strand at 571.357 kb on - strand at 571.414 kb on + strand at 571.415 kb on - strand at 571.415 kb on - strand at 571.647 kb on + strand, within LRK53_RS02495 at 571.647 kb on + strand, within LRK53_RS02495 at 571.647 kb on + strand, within LRK53_RS02495 at 571.667 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.864 kb on + strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 571.865 kb on - strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.019 kb on + strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.020 kb on - strand, within LRK53_RS02495 at 572.086 kb on + strand at 572.086 kb on + strand at 572.087 kb on - strand at 572.087 kb on - strand at 572.087 kb on - strand at 572.087 kb on - strand at 572.567 kb on - strand at 572.608 kb on + strand at 572.608 kb on + strand at 572.608 kb on + strand at 572.608 kb on + strand at 572.608 kb on + strand at 572.609 kb on - strand at 572.609 kb on - strand at 572.609 kb on - strand at 572.609 kb on - strand at 572.609 kb on - strand at 572.614 kb on + strand at 572.614 kb on + strand at 572.614 kb on + strand at 572.614 kb on + strand at 572.615 kb on - strand at 572.615 kb on - strand at 572.615 kb on - strand at 572.615 kb on - strand at 572.615 kb on - strand at 572.615 kb on - strand at 572.615 kb on - strand at 572.615 kb on - strand at 572.713 kb on + strand at 572.713 kb on + strand at 572.801 kb on + strand at 572.802 kb on - strand at 572.802 kb on - strand at 572.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; remove 570,955 + -1.7 570,955 + -0.1 570,955 + -0.6 570,955 + +1.3 570,955 + -2.4 570,955 + +1.0 570,956 - -0.5 570,956 - -2.5 570,956 - -0.6 570,956 - +0.2 571,016 + LRK53_RS02485 0.28 -2.5 571,016 + LRK53_RS02485 0.28 -0.7 571,016 + LRK53_RS02485 0.28 -1.3 571,016 + LRK53_RS02485 0.28 +0.4 571,016 + LRK53_RS02485 0.28 -0.9 571,016 + LRK53_RS02485 0.28 -0.6 571,016 + LRK53_RS02485 0.28 -0.2 571,016 + LRK53_RS02485 0.28 -0.2 571,016 + LRK53_RS02485 0.28 -1.8 571,017 - LRK53_RS02485 0.29 -1.2 571,017 - LRK53_RS02485 0.29 -0.8 571,017 - LRK53_RS02485 0.29 +0.3 571,017 - LRK53_RS02485 0.29 -1.2 571,017 - LRK53_RS02485 0.29 -1.3 571,017 - LRK53_RS02485 0.29 +1.9 571,017 - LRK53_RS02485 0.29 -1.0 571,017 - LRK53_RS02485 0.29 -1.6 571,017 - LRK53_RS02485 0.29 -0.5 571,017 - LRK53_RS02485 0.29 -1.3 571,044 - LRK53_RS02485 0.43 -1.1 571,234 - LRK53_RS02490 0.49 -2.0 571,333 + +0.6 571,333 + -1.0 571,333 + +0.1 571,333 + -3.3 571,333 + -0.2 571,333 + -2.1 571,334 - +1.8 571,334 - -3.2 571,334 - -1.0 571,334 - +0.6 571,334 - -1.2 571,334 - +0.6 571,334 - +1.8 571,334 - -0.2 571,342 + -0.4 571,342 + +0.0 571,342 + -1.1 571,342 + -1.4 571,342 + -0.7 571,342 + -1.2 571,342 + -0.7 571,342 + -1.4 571,342 + -3.5 571,342 + -0.2 571,342 + -0.4 571,342 + -0.3 571,342 + -1.6 571,342 + +0.5 571,342 + -1.6 571,342 + -0.4 571,342 + -0.7 571,342 + -1.7 571,342 + -2.2 571,343 - -0.4 571,343 - -0.2 571,343 - -0.8 571,343 - +0.9 571,343 - -0.8 571,343 - +0.7 571,343 - -1.0 571,343 - -1.0 571,343 - -1.2 571,343 - -1.8 571,343 - -1.2 571,343 - -1.8 571,343 - -1.1 571,343 - -1.8 571,343 - -1.0 571,343 - -0.8 571,356 + -1.2 571,357 - +0.7 571,357 - -0.4 571,357 - +1.2 571,414 + -1.6 571,415 - -0.6 571,415 - -1.5 571,647 + LRK53_RS02495 0.40 +0.0 571,647 + LRK53_RS02495 0.40 +0.7 571,647 + LRK53_RS02495 0.40 -0.1 571,667 + LRK53_RS02495 0.43 -0.3 571,864 + LRK53_RS02495 0.69 -0.8 571,864 + LRK53_RS02495 0.69 -0.1 571,864 + LRK53_RS02495 0.69 -2.0 571,864 + LRK53_RS02495 0.69 +0.1 571,864 + LRK53_RS02495 0.69 +0.7 571,864 + LRK53_RS02495 0.69 -0.9 571,864 + LRK53_RS02495 0.69 +1.2 571,864 + LRK53_RS02495 0.69 -0.7 571,865 - LRK53_RS02495 0.69 -1.4 571,865 - LRK53_RS02495 0.69 -0.6 571,865 - LRK53_RS02495 0.69 +1.0 571,865 - LRK53_RS02495 0.69 -0.3 571,865 - LRK53_RS02495 0.69 +0.4 571,865 - LRK53_RS02495 0.69 +0.4 571,865 - LRK53_RS02495 0.69 -0.4 572,019 + LRK53_RS02495 0.89 +0.2 572,019 + LRK53_RS02495 0.89 +1.2 572,019 + LRK53_RS02495 0.89 +0.4 572,019 + LRK53_RS02495 0.89 -0.6 572,019 + LRK53_RS02495 0.89 -0.8 572,020 - LRK53_RS02495 0.89 -0.2 572,020 - LRK53_RS02495 0.89 -2.3 572,020 - LRK53_RS02495 0.89 -1.0 572,020 - LRK53_RS02495 0.89 +1.0 572,020 - LRK53_RS02495 0.89 +1.4 572,020 - LRK53_RS02495 0.89 -1.0 572,020 - LRK53_RS02495 0.89 +2.1 572,020 - LRK53_RS02495 0.89 +0.2 572,020 - LRK53_RS02495 0.89 -0.2 572,020 - LRK53_RS02495 0.89 -0.6 572,086 + -1.4 572,086 + -1.8 572,087 - -1.8 572,087 - -0.2 572,087 - -1.0 572,087 - +1.0 572,567 - +0.1 572,608 + -0.7 572,608 + -0.6 572,608 + -1.6 572,608 + -1.4 572,608 + -0.1 572,609 - +1.2 572,609 - -0.8 572,609 - -0.1 572,609 - +0.8 572,609 - -0.8 572,614 + -0.3 572,614 + -1.6 572,614 + +0.2 572,614 + -1.3 572,615 - -0.9 572,615 - -0.8 572,615 - +1.6 572,615 - +0.7 572,615 - -1.3 572,615 - -1.0 572,615 - -0.8 572,615 - -1.1 572,713 + -1.6 572,713 + +0.4 572,801 + -1.0 572,802 - -2.1 572,802 - -1.5 572,802 - +0.5
Or see this region's nucleotide sequence