Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00690

Experiment: biofilm; Day1; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00685 and LRK53_RS00690 are separated by 143 nucleotidesLRK53_RS00690 and LRK53_RS00695 are separated by 392 nucleotides LRK53_RS00685: LRK53_RS00685 - SIS domain-containing protein, at 155,263 to 156,294 _RS00685 LRK53_RS00690: LRK53_RS00690 - N-acetylglucosamine-6-phosphate deacetylase, at 156,438 to 157,574 _RS00690 LRK53_RS00695: LRK53_RS00695 - TonB-dependent vitamin B12 receptor, at 157,967 to 159,817 _RS00695 Position (kb) 156 157 158Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 155.438 kb on - strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.446 kb on + strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.447 kb on - strand, within LRK53_RS00685at 155.509 kb on + strand, within LRK53_RS00685at 155.509 kb on + strand, within LRK53_RS00685at 155.509 kb on + strand, within LRK53_RS00685at 155.509 kb on + strand, within LRK53_RS00685at 155.509 kb on + strand, within LRK53_RS00685at 155.509 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.725 kb on + strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.726 kb on - strand, within LRK53_RS00685at 155.727 kb on + strand, within LRK53_RS00685at 155.728 kb on - strand, within LRK53_RS00685at 155.728 kb on - strand, within LRK53_RS00685at 155.728 kb on - strand, within LRK53_RS00685at 156.209 kb on - strandat 156.209 kb on - strandat 156.405 kb on + strandat 156.405 kb on + strandat 156.405 kb on + strandat 156.405 kb on + strandat 156.405 kb on + strandat 156.405 kb on + strandat 156.405 kb on + strandat 156.405 kb on + strandat 156.405 kb on + strandat 157.287 kb on + strand, within LRK53_RS00690at 157.287 kb on + strand, within LRK53_RS00690at 157.288 kb on - strand, within LRK53_RS00690at 157.288 kb on - strand, within LRK53_RS00690at 157.533 kb on + strandat 157.533 kb on + strandat 157.534 kb on - strandat 157.534 kb on - strandat 157.605 kb on + strandat 157.605 kb on + strandat 157.606 kb on - strandat 157.610 kb on + strandat 157.610 kb on + strandat 157.610 kb on + strandat 157.715 kb on + strandat 157.715 kb on + strandat 157.715 kb on + strandat 157.715 kb on + strandat 157.715 kb on + strandat 157.715 kb on + strandat 157.954 kb on + strandat 157.954 kb on + strandat 157.954 kb on + strandat 157.954 kb on + strandat 157.954 kb on + strandat 157.955 kb on - strandat 157.955 kb on - strandat 157.955 kb on - strandat 158.362 kb on - strand, within LRK53_RS00695at 158.384 kb on + strand, within LRK53_RS00695at 158.384 kb on + strand, within LRK53_RS00695at 158.385 kb on - strand, within LRK53_RS00695at 158.385 kb on - strand, within LRK53_RS00695at 158.385 kb on - strand, within LRK53_RS00695at 158.537 kb on + strand, within LRK53_RS00695at 158.561 kb on + strand, within LRK53_RS00695at 158.561 kb on + strand, within LRK53_RS00695at 158.561 kb on + strand, within LRK53_RS00695at 158.562 kb on - strand, within LRK53_RS00695at 158.562 kb on - strand, within LRK53_RS00695

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM;
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155,438 - LRK53_RS00685 0.17 -1.2
155,446 + LRK53_RS00685 0.18 -3.2
155,446 + LRK53_RS00685 0.18 +0.2
155,446 + LRK53_RS00685 0.18 -2.4
155,446 + LRK53_RS00685 0.18 +0.1
155,446 + LRK53_RS00685 0.18 -1.6
155,446 + LRK53_RS00685 0.18 -2.0
155,446 + LRK53_RS00685 0.18 -0.5
155,446 + LRK53_RS00685 0.18 -0.9
155,446 + LRK53_RS00685 0.18 -1.0
155,446 + LRK53_RS00685 0.18 -0.1
155,446 + LRK53_RS00685 0.18 +0.4
155,446 + LRK53_RS00685 0.18 -0.5
155,446 + LRK53_RS00685 0.18 -2.7
155,447 - LRK53_RS00685 0.18 +0.0
155,447 - LRK53_RS00685 0.18 -0.5
155,447 - LRK53_RS00685 0.18 -0.5
155,447 - LRK53_RS00685 0.18 -0.1
155,447 - LRK53_RS00685 0.18 -0.9
155,447 - LRK53_RS00685 0.18 -1.5
155,447 - LRK53_RS00685 0.18 +1.2
155,447 - LRK53_RS00685 0.18 -1.9
155,447 - LRK53_RS00685 0.18 -1.9
155,447 - LRK53_RS00685 0.18 -1.0
155,447 - LRK53_RS00685 0.18 -0.8
155,447 - LRK53_RS00685 0.18 -1.9
155,447 - LRK53_RS00685 0.18 -1.4
155,447 - LRK53_RS00685 0.18 -1.5
155,447 - LRK53_RS00685 0.18 -0.5
155,509 + LRK53_RS00685 0.24 -0.7
155,509 + LRK53_RS00685 0.24 -0.6
155,509 + LRK53_RS00685 0.24 -0.1
155,509 + LRK53_RS00685 0.24 -0.5
155,509 + LRK53_RS00685 0.24 -2.4
155,509 + LRK53_RS00685 0.24 -0.9
155,725 + LRK53_RS00685 0.45 +2.7
155,725 + LRK53_RS00685 0.45 -3.0
155,725 + LRK53_RS00685 0.45 -2.0
155,725 + LRK53_RS00685 0.45 -1.6
155,725 + LRK53_RS00685 0.45 -0.1
155,725 + LRK53_RS00685 0.45 -0.9
155,725 + LRK53_RS00685 0.45 +1.5
155,725 + LRK53_RS00685 0.45 -0.6
155,725 + LRK53_RS00685 0.45 -2.5
155,725 + LRK53_RS00685 0.45 -0.4
155,725 + LRK53_RS00685 0.45 -1.3
155,725 + LRK53_RS00685 0.45 -0.3
155,725 + LRK53_RS00685 0.45 -0.5
155,725 + LRK53_RS00685 0.45 +0.7
155,725 + LRK53_RS00685 0.45 -0.8
155,725 + LRK53_RS00685 0.45 -3.7
155,725 + LRK53_RS00685 0.45 -0.8
155,725 + LRK53_RS00685 0.45 -2.6
155,725 + LRK53_RS00685 0.45 -1.1
155,725 + LRK53_RS00685 0.45 -0.6
155,725 + LRK53_RS00685 0.45 -0.9
155,725 + LRK53_RS00685 0.45 -2.9
155,725 + LRK53_RS00685 0.45 -1.6
155,725 + LRK53_RS00685 0.45 +0.5
155,725 + LRK53_RS00685 0.45 -2.5
155,725 + LRK53_RS00685 0.45 -0.5
155,725 + LRK53_RS00685 0.45 -1.3
155,725 + LRK53_RS00685 0.45 +3.4
155,725 + LRK53_RS00685 0.45 -2.3
155,725 + LRK53_RS00685 0.45 +0.5
155,725 + LRK53_RS00685 0.45 -0.7
155,725 + LRK53_RS00685 0.45 +2.4
155,725 + LRK53_RS00685 0.45 -0.1
155,725 + LRK53_RS00685 0.45 -2.5
155,725 + LRK53_RS00685 0.45 -1.4
155,725 + LRK53_RS00685 0.45 -1.8
155,725 + LRK53_RS00685 0.45 -1.4
155,725 + LRK53_RS00685 0.45 +0.2
155,725 + LRK53_RS00685 0.45 -1.3
155,725 + LRK53_RS00685 0.45 -2.1
155,725 + LRK53_RS00685 0.45 -3.6
155,726 - LRK53_RS00685 0.45 -0.8
155,726 - LRK53_RS00685 0.45 -2.4
155,726 - LRK53_RS00685 0.45 -0.3
155,726 - LRK53_RS00685 0.45 -2.4
155,726 - LRK53_RS00685 0.45 -1.7
155,726 - LRK53_RS00685 0.45 -1.7
155,726 - LRK53_RS00685 0.45 +0.8
155,726 - LRK53_RS00685 0.45 +1.0
155,726 - LRK53_RS00685 0.45 +0.7
155,726 - LRK53_RS00685 0.45 -0.1
155,726 - LRK53_RS00685 0.45 -1.5
155,726 - LRK53_RS00685 0.45 +0.4
155,726 - LRK53_RS00685 0.45 -0.6
155,726 - LRK53_RS00685 0.45 -0.8
155,726 - LRK53_RS00685 0.45 +0.5
155,726 - LRK53_RS00685 0.45 -0.5
155,726 - LRK53_RS00685 0.45 -2.5
155,726 - LRK53_RS00685 0.45 -2.0
155,726 - LRK53_RS00685 0.45 -0.1
155,726 - LRK53_RS00685 0.45 -0.7
155,726 - LRK53_RS00685 0.45 -1.3
155,726 - LRK53_RS00685 0.45 +0.1
155,726 - LRK53_RS00685 0.45 -0.4
155,726 - LRK53_RS00685 0.45 -0.2
155,726 - LRK53_RS00685 0.45 -1.4
155,726 - LRK53_RS00685 0.45 -1.6
155,726 - LRK53_RS00685 0.45 +1.8
155,726 - LRK53_RS00685 0.45 +0.1
155,726 - LRK53_RS00685 0.45 -0.6
155,726 - LRK53_RS00685 0.45 -0.3
155,726 - LRK53_RS00685 0.45 -1.0
155,726 - LRK53_RS00685 0.45 -0.8
155,726 - LRK53_RS00685 0.45 -0.6
155,726 - LRK53_RS00685 0.45 -1.8
155,726 - LRK53_RS00685 0.45 -3.0
155,726 - LRK53_RS00685 0.45 -0.1
155,726 - LRK53_RS00685 0.45 -2.0
155,726 - LRK53_RS00685 0.45 -0.9
155,726 - LRK53_RS00685 0.45 -0.0
155,726 - LRK53_RS00685 0.45 -0.9
155,726 - LRK53_RS00685 0.45 -2.9
155,727 + LRK53_RS00685 0.45 -1.1
155,728 - LRK53_RS00685 0.45 -0.3
155,728 - LRK53_RS00685 0.45 -2.0
155,728 - LRK53_RS00685 0.45 +0.2
156,209 - -0.9
156,209 - -0.9
156,405 + +0.6
156,405 + +1.2
156,405 + -1.2
156,405 + -0.5
156,405 + -0.8
156,405 + +0.4
156,405 + -1.0
156,405 + -0.5
156,405 + -1.1
157,287 + LRK53_RS00690 0.75 -0.1
157,287 + LRK53_RS00690 0.75 +0.1
157,288 - LRK53_RS00690 0.75 -1.5
157,288 - LRK53_RS00690 0.75 -1.9
157,533 + -2.1
157,533 + -0.3
157,534 - -0.1
157,534 - -0.5
157,605 + +1.0
157,605 + +0.7
157,606 - -0.4
157,610 + -0.3
157,610 + -0.1
157,610 + +0.7
157,715 + -0.2
157,715 + +0.2
157,715 + -2.5
157,715 + -1.7
157,715 + -0.4
157,715 + -1.5
157,954 + -0.2
157,954 + -0.2
157,954 + -2.0
157,954 + +1.4
157,954 + -1.3
157,955 - -1.5
157,955 - -1.1
157,955 - -0.5
158,362 - LRK53_RS00695 0.21 +0.5
158,384 + LRK53_RS00695 0.23 -0.1
158,384 + LRK53_RS00695 0.23 -1.1
158,385 - LRK53_RS00695 0.23 -1.2
158,385 - LRK53_RS00695 0.23 -0.8
158,385 - LRK53_RS00695 0.23 -0.3
158,537 + LRK53_RS00695 0.31 -0.3
158,561 + LRK53_RS00695 0.32 -0.8
158,561 + LRK53_RS00695 0.32 -2.2
158,561 + LRK53_RS00695 0.32 -1.5
158,562 - LRK53_RS00695 0.32 -0.7
158,562 - LRK53_RS00695 0.32 -1.5

Or see this region's nucleotide sequence