Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06917 and MPMX19_06918 are separated by 115 nucleotides MPMX19_06918 and MPMX19_06919 overlap by 1 nucleotides MPMX19_06919 and MPMX19_06920 overlap by 4 nucleotides
MPMX19_06917: MPMX19_06917 - HTH-type transcriptional regulator PgrR, at 192,887 to 193,819
_06917
MPMX19_06918: MPMX19_06918 - Esterase EstB, at 193,935 to 195,125
_06918
MPMX19_06919: MPMX19_06919 - hypothetical protein, at 195,125 to 195,322
_06919
MPMX19_06920: MPMX19_06920 - Purine ribonucleoside efflux pump NepI, at 195,319 to 196,527
_06920
Position (kb) 193
194
195
196 Strain fitness (log2 ratio) -2
-1
0
1
2 at 193.107 kb on + strand, within MPMX19_06917 at 193.107 kb on + strand, within MPMX19_06917 at 193.108 kb on - strand, within MPMX19_06917 at 193.251 kb on + strand, within MPMX19_06917 at 193.251 kb on + strand, within MPMX19_06917 at 193.251 kb on + strand, within MPMX19_06917 at 193.314 kb on + strand, within MPMX19_06917 at 193.315 kb on - strand, within MPMX19_06917 at 193.467 kb on + strand, within MPMX19_06917 at 193.736 kb on + strand at 193.852 kb on + strand at 193.852 kb on + strand at 193.853 kb on - strand at 193.853 kb on - strand at 193.870 kb on + strand at 193.896 kb on + strand at 193.896 kb on + strand at 193.897 kb on - strand at 193.897 kb on - strand at 193.897 kb on - strand at 193.897 kb on - strand at 193.897 kb on - strand at 193.949 kb on - strand at 194.403 kb on - strand, within MPMX19_06918 at 194.451 kb on + strand, within MPMX19_06918 at 194.451 kb on + strand, within MPMX19_06918 at 194.451 kb on + strand, within MPMX19_06918 at 194.451 kb on + strand, within MPMX19_06918 at 194.451 kb on + strand, within MPMX19_06918 at 194.452 kb on - strand, within MPMX19_06918 at 194.452 kb on - strand, within MPMX19_06918 at 194.452 kb on - strand, within MPMX19_06918 at 194.475 kb on + strand, within MPMX19_06918 at 194.625 kb on + strand, within MPMX19_06918 at 194.626 kb on - strand, within MPMX19_06918 at 194.626 kb on - strand, within MPMX19_06918 at 194.626 kb on - strand, within MPMX19_06918 at 194.626 kb on - strand, within MPMX19_06918 at 194.706 kb on + strand, within MPMX19_06918 at 194.706 kb on + strand, within MPMX19_06918 at 194.988 kb on + strand, within MPMX19_06918 at 194.988 kb on + strand, within MPMX19_06918 at 194.989 kb on - strand, within MPMX19_06918 at 195.054 kb on + strand at 195.054 kb on + strand at 195.055 kb on - strand at 195.102 kb on + strand at 195.102 kb on + strand at 195.103 kb on - strand at 195.103 kb on - strand at 195.103 kb on - strand at 195.290 kb on - strand, within MPMX19_06919 at 195.484 kb on + strand, within MPMX19_06920 at 195.485 kb on - strand, within MPMX19_06920 at 195.485 kb on - strand, within MPMX19_06920 at 195.624 kb on + strand, within MPMX19_06920 at 195.624 kb on + strand, within MPMX19_06920 at 195.625 kb on - strand, within MPMX19_06920 at 195.625 kb on - strand, within MPMX19_06920 at 195.625 kb on - strand, within MPMX19_06920 at 195.688 kb on + strand, within MPMX19_06920 at 195.689 kb on - strand, within MPMX19_06920 at 195.689 kb on - strand, within MPMX19_06920 at 195.689 kb on - strand, within MPMX19_06920 at 195.798 kb on + strand, within MPMX19_06920 at 195.799 kb on - strand, within MPMX19_06920 at 195.799 kb on - strand, within MPMX19_06920 at 195.816 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.047 kb on + strand, within MPMX19_06920 at 196.048 kb on - strand, within MPMX19_06920
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 193,107 + MPMX19_06917 0.24 -0.8 193,107 + MPMX19_06917 0.24 -0.7 193,108 - MPMX19_06917 0.24 -0.8 193,251 + MPMX19_06917 0.39 +1.2 193,251 + MPMX19_06917 0.39 +0.7 193,251 + MPMX19_06917 0.39 +0.1 193,314 + MPMX19_06917 0.46 -1.2 193,315 - MPMX19_06917 0.46 -0.3 193,467 + MPMX19_06917 0.62 +1.0 193,736 + -0.1 193,852 + +1.1 193,852 + -1.2 193,853 - +0.9 193,853 - +0.8 193,870 + +1.0 193,896 + -2.5 193,896 + -1.1 193,897 - -0.4 193,897 - +0.5 193,897 - -0.3 193,897 - +0.1 193,897 - -0.7 193,949 - -0.8 194,403 - MPMX19_06918 0.39 +0.0 194,451 + MPMX19_06918 0.43 +0.7 194,451 + MPMX19_06918 0.43 -0.5 194,451 + MPMX19_06918 0.43 -0.6 194,451 + MPMX19_06918 0.43 -0.1 194,451 + MPMX19_06918 0.43 -1.8 194,452 - MPMX19_06918 0.43 +0.2 194,452 - MPMX19_06918 0.43 +0.2 194,452 - MPMX19_06918 0.43 -1.0 194,475 + MPMX19_06918 0.45 -0.3 194,625 + MPMX19_06918 0.58 +0.1 194,626 - MPMX19_06918 0.58 -0.0 194,626 - MPMX19_06918 0.58 +0.2 194,626 - MPMX19_06918 0.58 +0.6 194,626 - MPMX19_06918 0.58 -0.2 194,706 + MPMX19_06918 0.65 -0.3 194,706 + MPMX19_06918 0.65 -1.1 194,988 + MPMX19_06918 0.88 +2.6 194,988 + MPMX19_06918 0.88 +0.8 194,989 - MPMX19_06918 0.88 -0.1 195,054 + +0.7 195,054 + -0.3 195,055 - +0.1 195,102 + -0.4 195,102 + -0.3 195,103 - +1.6 195,103 - +0.7 195,103 - +1.2 195,290 - MPMX19_06919 0.83 +0.5 195,484 + MPMX19_06920 0.14 -1.3 195,485 - MPMX19_06920 0.14 +0.5 195,485 - MPMX19_06920 0.14 -0.3 195,624 + MPMX19_06920 0.25 +0.3 195,624 + MPMX19_06920 0.25 -0.3 195,625 - MPMX19_06920 0.25 +1.5 195,625 - MPMX19_06920 0.25 +0.5 195,625 - MPMX19_06920 0.25 -0.1 195,688 + MPMX19_06920 0.31 +0.0 195,689 - MPMX19_06920 0.31 -1.6 195,689 - MPMX19_06920 0.31 +0.5 195,689 - MPMX19_06920 0.31 -0.1 195,798 + MPMX19_06920 0.40 -1.1 195,799 - MPMX19_06920 0.40 +0.4 195,799 - MPMX19_06920 0.40 +0.4 195,816 + MPMX19_06920 0.41 -0.0 196,000 + MPMX19_06920 0.56 -0.3 196,000 + MPMX19_06920 0.56 +0.2 196,000 + MPMX19_06920 0.56 +1.0 196,000 + MPMX19_06920 0.56 +0.4 196,000 + MPMX19_06920 0.56 +0.2 196,000 + MPMX19_06920 0.56 -1.0 196,000 + MPMX19_06920 0.56 -0.4 196,000 + MPMX19_06920 0.56 -0.1 196,001 - MPMX19_06920 0.56 +1.4 196,001 - MPMX19_06920 0.56 +0.2 196,001 - MPMX19_06920 0.56 +1.5 196,001 - MPMX19_06920 0.56 +1.0 196,001 - MPMX19_06920 0.56 +1.5 196,001 - MPMX19_06920 0.56 +0.5 196,001 - MPMX19_06920 0.56 +0.4 196,001 - MPMX19_06920 0.56 -0.2 196,001 - MPMX19_06920 0.56 -0.4 196,001 - MPMX19_06920 0.56 -1.6 196,001 - MPMX19_06920 0.56 -1.2 196,002 + MPMX19_06920 0.56 +0.1 196,002 + MPMX19_06920 0.56 +1.1 196,002 + MPMX19_06920 0.56 -1.3 196,002 + MPMX19_06920 0.56 +0.9 196,003 - MPMX19_06920 0.57 -0.6 196,003 - MPMX19_06920 0.57 +0.4 196,003 - MPMX19_06920 0.57 +1.2 196,003 - MPMX19_06920 0.57 -0.1 196,003 - MPMX19_06920 0.57 -0.3 196,003 - MPMX19_06920 0.57 -0.6 196,003 - MPMX19_06920 0.57 +1.4 196,003 - MPMX19_06920 0.57 +0.4 196,006 + MPMX19_06920 0.57 -0.4 196,006 + MPMX19_06920 0.57 -0.8 196,006 + MPMX19_06920 0.57 -0.3 196,006 + MPMX19_06920 0.57 -1.6 196,006 + MPMX19_06920 0.57 -0.5 196,006 + MPMX19_06920 0.57 +0.7 196,006 + MPMX19_06920 0.57 +0.7 196,007 - MPMX19_06920 0.57 +0.2 196,007 - MPMX19_06920 0.57 -0.1 196,007 - MPMX19_06920 0.57 +1.1 196,007 - MPMX19_06920 0.57 -1.1 196,007 - MPMX19_06920 0.57 -0.5 196,007 - MPMX19_06920 0.57 -2.3 196,007 - MPMX19_06920 0.57 -0.8 196,047 + MPMX19_06920 0.60 -0.6 196,048 - MPMX19_06920 0.60 +0.5
Or see this region's nucleotide sequence