Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06351

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06350 and MPMX19_06351 are separated by 12 nucleotidesMPMX19_06351 and MPMX19_06352 overlap by 4 nucleotidesMPMX19_06352 and MPMX19_06353 are separated by 52 nucleotides MPMX19_06350: MPMX19_06350 - Arsenical-resistance protein Acr3, at 116,367 to 117,440 _06350 MPMX19_06351: MPMX19_06351 - Arsenate reductase, at 117,453 to 117,887 _06351 MPMX19_06352: MPMX19_06352 - Arsenate reductase, at 117,884 to 118,402 _06352 MPMX19_06353: MPMX19_06353 - hypothetical protein, at 118,455 to 118,811 _06353 Position (kb) 117 118Strain fitness (log2 ratio) -2 -1 0 1 2 3at 116.602 kb on + strand, within MPMX19_06350at 116.602 kb on + strand, within MPMX19_06350at 116.602 kb on + strand, within MPMX19_06350at 116.603 kb on - strand, within MPMX19_06350at 116.603 kb on - strand, within MPMX19_06350at 116.624 kb on - strand, within MPMX19_06350at 116.624 kb on - strand, within MPMX19_06350at 116.762 kb on + strand, within MPMX19_06350at 116.763 kb on - strand, within MPMX19_06350at 116.843 kb on - strand, within MPMX19_06350at 116.843 kb on - strand, within MPMX19_06350at 116.843 kb on - strand, within MPMX19_06350at 116.843 kb on - strand, within MPMX19_06350at 116.971 kb on + strand, within MPMX19_06350at 116.972 kb on - strand, within MPMX19_06350at 116.972 kb on - strand, within MPMX19_06350at 116.972 kb on - strand, within MPMX19_06350at 117.379 kb on + strandat 117.379 kb on + strandat 117.379 kb on + strandat 117.379 kb on + strandat 117.379 kb on + strandat 117.380 kb on - strandat 117.380 kb on - strandat 117.787 kb on + strand, within MPMX19_06351at 117.787 kb on + strand, within MPMX19_06351at 117.787 kb on + strand, within MPMX19_06351at 117.788 kb on - strand, within MPMX19_06351at 117.788 kb on - strand, within MPMX19_06351at 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.923 kb on - strandat 117.991 kb on + strand, within MPMX19_06352at 118.386 kb on + strandat 118.387 kb on - strandat 118.387 kb on - strandat 118.387 kb on - strandat 118.387 kb on - strandat 118.387 kb on - strandat 118.387 kb on - strandat 118.582 kb on + strand, within MPMX19_06353at 118.594 kb on + strand, within MPMX19_06353at 118.595 kb on - strand, within MPMX19_06353at 118.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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116,602 + MPMX19_06350 0.22 -0.5
116,602 + MPMX19_06350 0.22 -0.4
116,602 + MPMX19_06350 0.22 -1.2
116,603 - MPMX19_06350 0.22 -0.2
116,603 - MPMX19_06350 0.22 -0.2
116,624 - MPMX19_06350 0.24 -2.3
116,624 - MPMX19_06350 0.24 -0.7
116,762 + MPMX19_06350 0.37 -0.8
116,763 - MPMX19_06350 0.37 -0.2
116,843 - MPMX19_06350 0.44 -1.5
116,843 - MPMX19_06350 0.44 -0.6
116,843 - MPMX19_06350 0.44 -1.9
116,843 - MPMX19_06350 0.44 -0.2
116,971 + MPMX19_06350 0.56 -0.5
116,972 - MPMX19_06350 0.56 -0.8
116,972 - MPMX19_06350 0.56 +0.6
116,972 - MPMX19_06350 0.56 -1.9
117,379 + +0.5
117,379 + +0.4
117,379 + -0.2
117,379 + -2.0
117,379 + +0.1
117,380 - -0.9
117,380 - -0.7
117,787 + MPMX19_06351 0.77 -0.9
117,787 + MPMX19_06351 0.77 -0.9
117,787 + MPMX19_06351 0.77 -1.8
117,788 - MPMX19_06351 0.77 -1.3
117,788 - MPMX19_06351 0.77 -0.3
117,868 + -0.5
117,868 + -0.2
117,868 + -0.3
117,868 + +0.2
117,868 + -0.7
117,868 + +0.1
117,868 + -1.2
117,868 + +0.4
117,868 + -0.2
117,868 + +0.0
117,868 + +0.2
117,868 + -0.5
117,868 + -0.5
117,868 + -0.7
117,869 - -0.6
117,869 - -0.9
117,869 - -0.2
117,869 - -0.1
117,869 - -2.3
117,869 - +0.4
117,869 - -0.6
117,869 - -0.2
117,869 - +0.3
117,869 - +0.3
117,923 - -1.5
117,991 + MPMX19_06352 0.21 -0.9
118,386 + +3.4
118,387 - -0.8
118,387 - -0.4
118,387 - +0.0
118,387 - +1.1
118,387 - +1.2
118,387 - -2.0
118,582 + MPMX19_06353 0.36 +0.8
118,594 + MPMX19_06353 0.39 -2.2
118,595 - MPMX19_06353 0.39 -0.4
118,803 - -0.1

Or see this region's nucleotide sequence