Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05822 and MPMX19_05823 are separated by 34 nucleotides MPMX19_05823 and MPMX19_05824 are separated by 155 nucleotides
MPMX19_05822: MPMX19_05822 - Sensor histidine kinase RcsC, at 549,102 to 551,894
_05822
MPMX19_05823: MPMX19_05823 - hypothetical protein, at 551,929 to 552,234
_05823
MPMX19_05824: MPMX19_05824 - hypothetical protein, at 552,390 to 553,403
_05824
Position (kb) 551
552
553 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 551.820 kb on + strand at 551.820 kb on + strand at 551.820 kb on + strand at 551.821 kb on - strand at 551.821 kb on - strand at 551.821 kb on - strand at 551.821 kb on - strand at 551.821 kb on - strand at 551.907 kb on + strand at 551.908 kb on - strand at 552.114 kb on - strand, within MPMX19_05823 at 552.114 kb on - strand, within MPMX19_05823 at 552.152 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.316 kb on - strand at 552.316 kb on - strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.422 kb on - strand at 552.422 kb on - strand at 552.422 kb on - strand at 552.422 kb on - strand at 552.637 kb on + strand, within MPMX19_05824 at 552.638 kb on - strand, within MPMX19_05824 at 552.844 kb on + strand, within MPMX19_05824 at 552.844 kb on + strand, within MPMX19_05824 at 552.844 kb on + strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 553.099 kb on + strand, within MPMX19_05824 at 553.099 kb on + strand, within MPMX19_05824 at 553.099 kb on + strand, within MPMX19_05824 at 553.099 kb on + strand, within MPMX19_05824 at 553.100 kb on - strand, within MPMX19_05824 at 553.100 kb on - strand, within MPMX19_05824 at 553.100 kb on - strand, within MPMX19_05824 at 553.100 kb on - strand, within MPMX19_05824 at 553.100 kb on - strand, within MPMX19_05824 at 553.100 kb on - strand, within MPMX19_05824
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 551,820 + +0.9 551,820 + +0.0 551,820 + -0.2 551,821 - +0.6 551,821 - +0.3 551,821 - -0.7 551,821 - +0.5 551,821 - -0.7 551,907 + -1.1 551,908 - +0.5 552,114 - MPMX19_05823 0.60 -0.4 552,114 - MPMX19_05823 0.60 -0.8 552,152 + MPMX19_05823 0.73 -2.1 552,197 + MPMX19_05823 0.88 +1.0 552,197 + MPMX19_05823 0.88 -0.2 552,197 + MPMX19_05823 0.88 -0.2 552,197 + MPMX19_05823 0.88 -0.2 552,197 + MPMX19_05823 0.88 -0.8 552,197 + MPMX19_05823 0.88 -1.0 552,197 + MPMX19_05823 0.88 +1.2 552,197 + MPMX19_05823 0.88 -1.0 552,197 + MPMX19_05823 0.88 -0.9 552,197 + MPMX19_05823 0.88 +1.0 552,197 + MPMX19_05823 0.88 -1.7 552,197 + MPMX19_05823 0.88 -1.5 552,197 + MPMX19_05823 0.88 -1.8 552,198 - MPMX19_05823 0.88 -0.3 552,198 - MPMX19_05823 0.88 -0.7 552,198 - MPMX19_05823 0.88 -0.4 552,198 - MPMX19_05823 0.88 -0.8 552,198 - MPMX19_05823 0.88 -0.4 552,198 - MPMX19_05823 0.88 -1.5 552,198 - MPMX19_05823 0.88 -0.2 552,198 - MPMX19_05823 0.88 +0.4 552,198 - MPMX19_05823 0.88 +0.5 552,198 - MPMX19_05823 0.88 -3.0 552,198 - MPMX19_05823 0.88 -0.1 552,198 - MPMX19_05823 0.88 -1.4 552,316 - +1.1 552,316 - -0.2 552,421 + +1.1 552,421 + -0.1 552,421 + +0.9 552,421 + +0.1 552,421 + -1.8 552,421 + +0.8 552,421 + -1.8 552,422 - -0.7 552,422 - -0.1 552,422 - +0.8 552,422 - -1.0 552,637 + MPMX19_05824 0.24 -0.1 552,638 - MPMX19_05824 0.24 -1.0 552,844 + MPMX19_05824 0.45 +0.2 552,844 + MPMX19_05824 0.45 -1.5 552,844 + MPMX19_05824 0.45 -1.2 552,845 - MPMX19_05824 0.45 -1.5 552,845 - MPMX19_05824 0.45 +0.8 552,845 - MPMX19_05824 0.45 -0.7 552,845 - MPMX19_05824 0.45 +0.6 552,845 - MPMX19_05824 0.45 -1.1 552,845 - MPMX19_05824 0.45 -0.5 552,845 - MPMX19_05824 0.45 +0.9 552,845 - MPMX19_05824 0.45 +0.1 553,099 + MPMX19_05824 0.70 -1.8 553,099 + MPMX19_05824 0.70 -0.8 553,099 + MPMX19_05824 0.70 -1.3 553,099 + MPMX19_05824 0.70 -2.5 553,100 - MPMX19_05824 0.70 +2.3 553,100 - MPMX19_05824 0.70 +0.3 553,100 - MPMX19_05824 0.70 +0.3 553,100 - MPMX19_05824 0.70 -0.7 553,100 - MPMX19_05824 0.70 -1.8 553,100 - MPMX19_05824 0.70 -1.0
Or see this region's nucleotide sequence