Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05683 and MPMX19_05684 are separated by 71 nucleotides MPMX19_05684 and MPMX19_05685 overlap by 4 nucleotides MPMX19_05685 and MPMX19_05686 are separated by 63 nucleotides MPMX19_05686 and MPMX19_05687 are separated by 90 nucleotides
MPMX19_05683: MPMX19_05683 - hypothetical protein, at 399,996 to 400,220
_05683
MPMX19_05684: MPMX19_05684 - Chemotaxis protein methyltransferase 1, at 400,292 to 401,131
_05684
MPMX19_05685: MPMX19_05685 - Protein-glutamate methylesterase/protein-glutamine glutaminase 2, at 401,128 to 402,294
_05685
MPMX19_05686: MPMX19_05686 - Chemotaxis protein CheY, at 402,358 to 402,723
_05686
MPMX19_05687: MPMX19_05687 - Chemotaxis protein CheW, at 402,814 to 403,314
_05687
Position (kb) 401
402
403 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.293 kb on + strand at 400.293 kb on + strand at 400.293 kb on + strand at 400.294 kb on - strand at 400.335 kb on + strand at 400.335 kb on + strand at 400.336 kb on - strand at 400.336 kb on - strand at 400.336 kb on - strand at 400.336 kb on - strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.370 kb on - strand at 400.370 kb on - strand at 400.370 kb on - strand at 400.370 kb on - strand at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.930 kb on + strand, within MPMX19_05685 at 401.930 kb on + strand, within MPMX19_05685 at 401.930 kb on + strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.295 kb on - strand at 402.295 kb on - strand at 402.295 kb on - strand at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.888 kb on + strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.891 kb on - strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 400,137 + MPMX19_05683 0.63 +0.3 400,137 + MPMX19_05683 0.63 +0.2 400,137 + MPMX19_05683 0.63 -0.7 400,137 + MPMX19_05683 0.63 -2.5 400,137 + MPMX19_05683 0.63 +0.2 400,137 + MPMX19_05683 0.63 -1.8 400,137 + MPMX19_05683 0.63 +0.0 400,137 + MPMX19_05683 0.63 +0.1 400,138 - MPMX19_05683 0.63 +0.4 400,138 - MPMX19_05683 0.63 +0.0 400,138 - MPMX19_05683 0.63 -0.7 400,138 - MPMX19_05683 0.63 +0.7 400,138 - MPMX19_05683 0.63 -0.0 400,138 - MPMX19_05683 0.63 -0.4 400,293 + +0.0 400,293 + -1.0 400,293 + -1.0 400,294 - -0.7 400,335 + +0.8 400,335 + -0.5 400,336 - -0.7 400,336 - -1.2 400,336 - -0.2 400,336 - -0.0 400,369 + -0.2 400,369 + +1.3 400,369 + +0.3 400,369 + +0.1 400,369 + -0.2 400,369 + +0.9 400,370 - +0.4 400,370 - -0.8 400,370 - +0.5 400,370 - -0.1 400,407 + MPMX19_05684 0.14 -0.2 400,407 + MPMX19_05684 0.14 +0.0 400,407 + MPMX19_05684 0.14 +0.0 400,407 + MPMX19_05684 0.14 +0.0 400,407 + MPMX19_05684 0.14 +0.2 400,407 + MPMX19_05684 0.14 +0.7 400,407 + MPMX19_05684 0.14 -2.6 400,407 + MPMX19_05684 0.14 -0.1 400,408 - MPMX19_05684 0.14 +0.2 400,408 - MPMX19_05684 0.14 -0.2 400,408 - MPMX19_05684 0.14 -2.2 400,408 - MPMX19_05684 0.14 -0.2 400,479 + MPMX19_05684 0.22 -0.2 400,479 + MPMX19_05684 0.22 -1.8 400,479 + MPMX19_05684 0.22 +0.2 400,479 + MPMX19_05684 0.22 -2.8 400,479 + MPMX19_05684 0.22 -0.4 400,479 + MPMX19_05684 0.22 -1.0 400,479 + MPMX19_05684 0.22 -0.4 400,480 - MPMX19_05684 0.22 +0.2 400,480 - MPMX19_05684 0.22 -1.7 400,480 - MPMX19_05684 0.22 -0.1 400,480 - MPMX19_05684 0.22 +0.7 400,480 - MPMX19_05684 0.22 -1.2 400,668 + MPMX19_05684 0.45 -0.2 400,668 + MPMX19_05684 0.45 +1.9 400,668 + MPMX19_05684 0.45 -1.8 400,668 + MPMX19_05684 0.45 +0.3 400,668 + MPMX19_05684 0.45 -1.0 400,668 + MPMX19_05684 0.45 +0.3 400,668 + MPMX19_05684 0.45 +1.1 400,668 + MPMX19_05684 0.45 +1.9 400,669 - MPMX19_05684 0.45 -2.6 400,669 - MPMX19_05684 0.45 +0.6 400,669 - MPMX19_05684 0.45 -3.4 400,669 - MPMX19_05684 0.45 -0.1 400,669 - MPMX19_05684 0.45 -1.1 400,669 - MPMX19_05684 0.45 -0.1 400,782 + MPMX19_05684 0.58 -0.6 400,782 + MPMX19_05684 0.58 -1.7 400,782 + MPMX19_05684 0.58 +0.7 400,782 + MPMX19_05684 0.58 -0.1 400,782 + MPMX19_05684 0.58 +1.1 400,782 + MPMX19_05684 0.58 +0.7 400,783 - MPMX19_05684 0.58 -1.1 400,783 - MPMX19_05684 0.58 +0.7 400,783 - MPMX19_05684 0.58 -0.8 400,783 - MPMX19_05684 0.58 +0.9 400,783 - MPMX19_05684 0.58 +0.1 400,783 - MPMX19_05684 0.58 +0.2 401,052 + -0.1 401,052 + -0.5 401,052 + -0.4 401,052 + -1.0 401,052 + +0.1 401,052 + +1.3 401,052 + -1.0 401,052 + -0.1 401,052 + -0.2 401,052 + -0.1 401,052 + -1.0 401,052 + +1.6 401,052 + +0.0 401,052 + -0.2 401,052 + -1.6 401,052 + +0.1 401,052 + -1.7 401,052 + +1.1 401,053 - -0.1 401,053 - -1.0 401,053 - -0.5 401,053 - +0.6 401,053 - +0.3 401,053 - +0.1 401,053 - +0.0 401,053 - -2.7 401,469 + MPMX19_05685 0.29 +1.0 401,469 + MPMX19_05685 0.29 -1.0 401,469 + MPMX19_05685 0.29 -0.7 401,469 + MPMX19_05685 0.29 +0.1 401,469 + MPMX19_05685 0.29 -0.3 401,469 + MPMX19_05685 0.29 +0.0 401,469 + MPMX19_05685 0.29 -0.7 401,469 + MPMX19_05685 0.29 -0.0 401,469 + MPMX19_05685 0.29 +0.0 401,469 + MPMX19_05685 0.29 +0.2 401,470 - MPMX19_05685 0.29 +0.7 401,470 - MPMX19_05685 0.29 -0.0 401,470 - MPMX19_05685 0.29 +0.8 401,470 - MPMX19_05685 0.29 +0.8 401,470 - MPMX19_05685 0.29 -1.3 401,470 - MPMX19_05685 0.29 +0.8 401,470 - MPMX19_05685 0.29 +0.2 401,470 - MPMX19_05685 0.29 -0.2 401,470 - MPMX19_05685 0.29 +0.9 401,470 - MPMX19_05685 0.29 +0.8 401,470 - MPMX19_05685 0.29 +0.3 401,470 - MPMX19_05685 0.29 +0.7 401,470 - MPMX19_05685 0.29 -2.4 401,470 - MPMX19_05685 0.29 +0.0 401,470 - MPMX19_05685 0.29 -1.7 401,470 - MPMX19_05685 0.29 +0.9 401,470 - MPMX19_05685 0.29 -0.5 401,470 - MPMX19_05685 0.29 +0.8 401,470 - MPMX19_05685 0.29 +0.0 401,492 + MPMX19_05685 0.31 +0.6 401,492 + MPMX19_05685 0.31 -0.5 401,492 + MPMX19_05685 0.31 -0.4 401,492 + MPMX19_05685 0.31 +1.2 401,492 + MPMX19_05685 0.31 +0.9 401,492 + MPMX19_05685 0.31 -0.2 401,492 + MPMX19_05685 0.31 -3.0 401,492 + MPMX19_05685 0.31 +1.3 401,492 + MPMX19_05685 0.31 -1.4 401,492 + MPMX19_05685 0.31 +1.4 401,492 + MPMX19_05685 0.31 -0.0 401,492 + MPMX19_05685 0.31 -1.1 401,492 + MPMX19_05685 0.31 -0.2 401,493 - MPMX19_05685 0.31 +0.3 401,493 - MPMX19_05685 0.31 -0.0 401,493 - MPMX19_05685 0.31 +0.2 401,493 - MPMX19_05685 0.31 +0.4 401,493 - MPMX19_05685 0.31 -0.8 401,493 - MPMX19_05685 0.31 -0.7 401,493 - MPMX19_05685 0.31 +1.1 401,493 - MPMX19_05685 0.31 -1.7 401,493 - MPMX19_05685 0.31 +1.5 401,493 - MPMX19_05685 0.31 +0.3 401,493 - MPMX19_05685 0.31 +0.6 401,493 - MPMX19_05685 0.31 +0.5 401,493 - MPMX19_05685 0.31 -0.4 401,493 - MPMX19_05685 0.31 +1.1 401,493 - MPMX19_05685 0.31 +0.2 401,493 - MPMX19_05685 0.31 -0.1 401,930 + MPMX19_05685 0.69 -1.5 401,930 + MPMX19_05685 0.69 +0.2 401,930 + MPMX19_05685 0.69 +1.2 401,931 - MPMX19_05685 0.69 +0.3 401,931 - MPMX19_05685 0.69 +0.7 401,931 - MPMX19_05685 0.69 -1.5 401,931 - MPMX19_05685 0.69 -0.0 401,931 - MPMX19_05685 0.69 -0.2 401,931 - MPMX19_05685 0.69 +1.6 402,294 + -0.7 402,294 + -0.7 402,294 + -0.4 402,294 + +0.1 402,294 + -0.5 402,294 + +0.9 402,295 - -2.1 402,295 - -0.5 402,295 - -0.8 402,422 + MPMX19_05686 0.17 -0.4 402,422 + MPMX19_05686 0.17 -0.7 402,422 + MPMX19_05686 0.17 +0.3 402,422 + MPMX19_05686 0.17 -0.7 402,422 + MPMX19_05686 0.17 +1.5 402,422 + MPMX19_05686 0.17 -0.3 402,423 - MPMX19_05686 0.18 +0.5 402,423 - MPMX19_05686 0.18 +0.3 402,423 - MPMX19_05686 0.18 -0.7 402,423 - MPMX19_05686 0.18 +0.2 402,423 - MPMX19_05686 0.18 +0.3 402,423 - MPMX19_05686 0.18 +0.3 402,888 + MPMX19_05687 0.15 +0.3 402,889 - MPMX19_05687 0.15 -0.7 402,889 - MPMX19_05687 0.15 -0.8 402,889 - MPMX19_05687 0.15 -0.1 402,890 + MPMX19_05687 0.15 +0.0 402,890 + MPMX19_05687 0.15 +1.3 402,890 + MPMX19_05687 0.15 -0.2 402,890 + MPMX19_05687 0.15 +0.5 402,891 - MPMX19_05687 0.15 -0.4 403,001 + MPMX19_05687 0.37 +0.4 403,001 + MPMX19_05687 0.37 -1.0 403,001 + MPMX19_05687 0.37 -0.6 403,001 + MPMX19_05687 0.37 +0.2 403,001 + MPMX19_05687 0.37 +0.8 403,001 + MPMX19_05687 0.37 +1.0 403,002 - MPMX19_05687 0.38 -1.9 403,002 - MPMX19_05687 0.38 +1.2 403,002 - MPMX19_05687 0.38 -0.2 403,002 - MPMX19_05687 0.38 -1.8 403,002 - MPMX19_05687 0.38 -0.2 403,002 - MPMX19_05687 0.38 -1.5
Or see this region's nucleotide sequence