Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05559

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05557 and MPMX19_05558 overlap by 4 nucleotidesMPMX19_05558 and MPMX19_05559 overlap by 4 nucleotidesMPMX19_05559 and MPMX19_05560 overlap by 1 nucleotidesMPMX19_05560 and MPMX19_05561 overlap by 29 nucleotidesMPMX19_05561 and MPMX19_05562 are separated by 2 nucleotides MPMX19_05557: MPMX19_05557 - Chemotaxis protein methyltransferase Cher2, at 265,855 to 266,742 _05557 MPMX19_05558: MPMX19_05558 - Chemotaxis protein CheY, at 266,739 to 267,164 _05558 MPMX19_05559: MPMX19_05559 - hypothetical protein, at 267,161 to 269,395 _05559 MPMX19_05560: MPMX19_05560 - hypothetical protein, at 269,395 to 269,634 _05560 MPMX19_05561: MPMX19_05561 - 5,6-dimethylbenzimidazole synthase, at 269,606 to 270,262 _05561 MPMX19_05562: MPMX19_05562 - Hydrogenobyrinate a,c-diamide synthase, at 270,265 to 271,578 _05562 Position (kb) 267 268 269 270Strain fitness (log2 ratio) -2 -1 0 1 2at 266.236 kb on + strand, within MPMX19_05557at 266.236 kb on + strand, within MPMX19_05557at 266.236 kb on + strand, within MPMX19_05557at 266.236 kb on + strand, within MPMX19_05557at 266.236 kb on + strand, within MPMX19_05557at 266.236 kb on + strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.284 kb on + strand, within MPMX19_05557at 266.285 kb on - strand, within MPMX19_05557at 266.285 kb on - strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.398 kb on + strand, within MPMX19_05557at 266.399 kb on - strand, within MPMX19_05557at 266.399 kb on - strand, within MPMX19_05557at 266.399 kb on - strand, within MPMX19_05557at 266.399 kb on - strand, within MPMX19_05557at 266.399 kb on - strand, within MPMX19_05557at 266.563 kb on + strand, within MPMX19_05557at 266.563 kb on + strand, within MPMX19_05557at 266.563 kb on + strand, within MPMX19_05557at 266.563 kb on + strand, within MPMX19_05557at 266.563 kb on + strand, within MPMX19_05557at 266.563 kb on + strand, within MPMX19_05557at 266.563 kb on + strand, within MPMX19_05557at 266.564 kb on - strand, within MPMX19_05557at 266.564 kb on - strand, within MPMX19_05557at 266.564 kb on - strand, within MPMX19_05557at 266.564 kb on - strand, within MPMX19_05557at 266.564 kb on - strand, within MPMX19_05557at 266.955 kb on + strand, within MPMX19_05558at 266.955 kb on + strand, within MPMX19_05558at 266.955 kb on + strand, within MPMX19_05558at 266.955 kb on + strand, within MPMX19_05558at 266.955 kb on + strand, within MPMX19_05558at 266.955 kb on + strand, within MPMX19_05558at 266.955 kb on + strand, within MPMX19_05558at 266.955 kb on + strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.076 kb on - strand, within MPMX19_05558at 267.076 kb on - strand, within MPMX19_05558at 267.076 kb on - strand, within MPMX19_05558at 267.656 kb on + strand, within MPMX19_05559at 267.656 kb on + strand, within MPMX19_05559at 267.656 kb on + strand, within MPMX19_05559at 267.657 kb on - strand, within MPMX19_05559at 267.657 kb on - strand, within MPMX19_05559at 267.657 kb on - strand, within MPMX19_05559at 267.786 kb on - strand, within MPMX19_05559at 269.021 kb on + strand, within MPMX19_05559at 269.021 kb on + strand, within MPMX19_05559at 269.021 kb on + strand, within MPMX19_05559at 269.021 kb on + strand, within MPMX19_05559at 269.021 kb on + strand, within MPMX19_05559at 269.021 kb on + strand, within MPMX19_05559at 269.021 kb on + strand, within MPMX19_05559at 269.021 kb on + strand, within MPMX19_05559at 269.021 kb on + strand, within MPMX19_05559at 269.021 kb on + strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.022 kb on - strand, within MPMX19_05559at 269.327 kb on + strandat 269.328 kb on - strandat 269.408 kb on - strandat 269.408 kb on - strandat 269.408 kb on - strandat 269.408 kb on - strandat 269.727 kb on + strand, within MPMX19_05561at 269.727 kb on + strand, within MPMX19_05561at 269.728 kb on - strand, within MPMX19_05561at 269.728 kb on - strand, within MPMX19_05561at 269.728 kb on - strand, within MPMX19_05561at 269.865 kb on + strand, within MPMX19_05561at 269.865 kb on + strand, within MPMX19_05561at 269.865 kb on + strand, within MPMX19_05561at 269.865 kb on + strand, within MPMX19_05561at 269.865 kb on + strand, within MPMX19_05561at 269.866 kb on - strand, within MPMX19_05561at 269.866 kb on - strand, within MPMX19_05561at 269.866 kb on - strand, within MPMX19_05561at 269.866 kb on - strand, within MPMX19_05561at 269.866 kb on - strand, within MPMX19_05561at 269.985 kb on + strand, within MPMX19_05561at 269.985 kb on + strand, within MPMX19_05561at 269.985 kb on + strand, within MPMX19_05561at 269.985 kb on + strand, within MPMX19_05561at 269.985 kb on + strand, within MPMX19_05561at 269.986 kb on - strand, within MPMX19_05561at 269.986 kb on - strand, within MPMX19_05561at 269.986 kb on - strand, within MPMX19_05561at 270.222 kb on + strandat 270.222 kb on + strandat 270.222 kb on + strandat 270.222 kb on + strandat 270.223 kb on - strandat 270.223 kb on - strandat 270.223 kb on - strandat 270.223 kb on - strandat 270.223 kb on - strandat 270.223 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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266,236 + MPMX19_05557 0.43 +0.0
266,236 + MPMX19_05557 0.43 -0.7
266,236 + MPMX19_05557 0.43 -0.6
266,236 + MPMX19_05557 0.43 -0.1
266,236 + MPMX19_05557 0.43 -0.6
266,236 + MPMX19_05557 0.43 +0.3
266,237 - MPMX19_05557 0.43 -0.5
266,237 - MPMX19_05557 0.43 +0.7
266,237 - MPMX19_05557 0.43 +0.9
266,237 - MPMX19_05557 0.43 -0.2
266,237 - MPMX19_05557 0.43 +0.2
266,237 - MPMX19_05557 0.43 -0.4
266,237 - MPMX19_05557 0.43 -1.9
266,237 - MPMX19_05557 0.43 +1.5
266,284 + MPMX19_05557 0.48 -0.2
266,285 - MPMX19_05557 0.48 -0.4
266,285 - MPMX19_05557 0.48 -0.2
266,350 + MPMX19_05557 0.56 -2.2
266,350 + MPMX19_05557 0.56 -2.1
266,350 + MPMX19_05557 0.56 +0.2
266,350 + MPMX19_05557 0.56 -0.4
266,350 + MPMX19_05557 0.56 +0.2
266,350 + MPMX19_05557 0.56 +1.2
266,350 + MPMX19_05557 0.56 +1.0
266,350 + MPMX19_05557 0.56 -0.3
266,350 + MPMX19_05557 0.56 +0.1
266,350 + MPMX19_05557 0.56 +0.4
266,350 + MPMX19_05557 0.56 +0.4
266,350 + MPMX19_05557 0.56 +0.1
266,350 + MPMX19_05557 0.56 -1.6
266,350 + MPMX19_05557 0.56 +0.2
266,350 + MPMX19_05557 0.56 +0.8
266,351 - MPMX19_05557 0.56 -0.9
266,351 - MPMX19_05557 0.56 +1.2
266,351 - MPMX19_05557 0.56 +0.4
266,351 - MPMX19_05557 0.56 +1.4
266,351 - MPMX19_05557 0.56 +0.2
266,351 - MPMX19_05557 0.56 +0.5
266,351 - MPMX19_05557 0.56 +0.7
266,351 - MPMX19_05557 0.56 -1.0
266,351 - MPMX19_05557 0.56 -1.1
266,351 - MPMX19_05557 0.56 +0.4
266,351 - MPMX19_05557 0.56 +0.4
266,398 + MPMX19_05557 0.61 -0.3
266,399 - MPMX19_05557 0.61 -0.5
266,399 - MPMX19_05557 0.61 -1.4
266,399 - MPMX19_05557 0.61 -0.0
266,399 - MPMX19_05557 0.61 +0.1
266,399 - MPMX19_05557 0.61 +0.2
266,563 + MPMX19_05557 0.80 +1.0
266,563 + MPMX19_05557 0.80 -1.6
266,563 + MPMX19_05557 0.80 +1.8
266,563 + MPMX19_05557 0.80 -1.3
266,563 + MPMX19_05557 0.80 +0.5
266,563 + MPMX19_05557 0.80 +0.3
266,563 + MPMX19_05557 0.80 -0.4
266,564 - MPMX19_05557 0.80 +0.8
266,564 - MPMX19_05557 0.80 -1.6
266,564 - MPMX19_05557 0.80 +1.0
266,564 - MPMX19_05557 0.80 -0.1
266,564 - MPMX19_05557 0.80 -0.1
266,955 + MPMX19_05558 0.51 -1.2
266,955 + MPMX19_05558 0.51 +0.7
266,955 + MPMX19_05558 0.51 -0.4
266,955 + MPMX19_05558 0.51 +0.2
266,955 + MPMX19_05558 0.51 +0.4
266,955 + MPMX19_05558 0.51 +0.2
266,955 + MPMX19_05558 0.51 -2.4
266,955 + MPMX19_05558 0.51 +0.7
266,956 - MPMX19_05558 0.51 -0.0
266,956 - MPMX19_05558 0.51 -0.0
266,956 - MPMX19_05558 0.51 -0.8
266,956 - MPMX19_05558 0.51 +0.7
266,956 - MPMX19_05558 0.51 +0.5
266,956 - MPMX19_05558 0.51 -0.5
266,956 - MPMX19_05558 0.51 +1.2
266,956 - MPMX19_05558 0.51 -0.3
266,956 - MPMX19_05558 0.51 +0.2
266,956 - MPMX19_05558 0.51 +0.0
267,075 + MPMX19_05558 0.79 +0.8
267,075 + MPMX19_05558 0.79 -0.6
267,075 + MPMX19_05558 0.79 -0.1
267,075 + MPMX19_05558 0.79 +0.5
267,075 + MPMX19_05558 0.79 -0.2
267,075 + MPMX19_05558 0.79 +1.2
267,075 + MPMX19_05558 0.79 +1.5
267,075 + MPMX19_05558 0.79 +2.4
267,075 + MPMX19_05558 0.79 +0.3
267,076 - MPMX19_05558 0.79 +0.8
267,076 - MPMX19_05558 0.79 -0.4
267,076 - MPMX19_05558 0.79 +1.7
267,656 + MPMX19_05559 0.22 +0.1
267,656 + MPMX19_05559 0.22 -0.3
267,656 + MPMX19_05559 0.22 +1.4
267,657 - MPMX19_05559 0.22 +0.5
267,657 - MPMX19_05559 0.22 -1.9
267,657 - MPMX19_05559 0.22 +0.2
267,786 - MPMX19_05559 0.28 -1.2
269,021 + MPMX19_05559 0.83 +0.6
269,021 + MPMX19_05559 0.83 -0.3
269,021 + MPMX19_05559 0.83 -2.1
269,021 + MPMX19_05559 0.83 -0.9
269,021 + MPMX19_05559 0.83 +0.4
269,021 + MPMX19_05559 0.83 +0.2
269,021 + MPMX19_05559 0.83 +0.8
269,021 + MPMX19_05559 0.83 -2.1
269,021 + MPMX19_05559 0.83 +0.5
269,021 + MPMX19_05559 0.83 -0.6
269,022 - MPMX19_05559 0.83 -1.9
269,022 - MPMX19_05559 0.83 -0.1
269,022 - MPMX19_05559 0.83 +1.2
269,022 - MPMX19_05559 0.83 -1.0
269,022 - MPMX19_05559 0.83 +0.6
269,022 - MPMX19_05559 0.83 -1.2
269,022 - MPMX19_05559 0.83 +1.7
269,022 - MPMX19_05559 0.83 -1.2
269,022 - MPMX19_05559 0.83 +0.1
269,022 - MPMX19_05559 0.83 +2.4
269,022 - MPMX19_05559 0.83 +0.6
269,022 - MPMX19_05559 0.83 +1.4
269,022 - MPMX19_05559 0.83 +1.3
269,022 - MPMX19_05559 0.83 -0.2
269,022 - MPMX19_05559 0.83 +0.2
269,022 - MPMX19_05559 0.83 +1.1
269,022 - MPMX19_05559 0.83 -1.2
269,022 - MPMX19_05559 0.83 +0.6
269,327 + -0.1
269,328 - -0.4
269,408 - +1.0
269,408 - -2.3
269,408 - -0.3
269,408 - +0.4
269,727 + MPMX19_05561 0.18 -1.6
269,727 + MPMX19_05561 0.18 -0.5
269,728 - MPMX19_05561 0.19 +1.6
269,728 - MPMX19_05561 0.19 +0.5
269,728 - MPMX19_05561 0.19 +0.5
269,865 + MPMX19_05561 0.39 -0.4
269,865 + MPMX19_05561 0.39 +0.2
269,865 + MPMX19_05561 0.39 +1.1
269,865 + MPMX19_05561 0.39 +0.1
269,865 + MPMX19_05561 0.39 +0.5
269,866 - MPMX19_05561 0.40 -1.2
269,866 - MPMX19_05561 0.40 -0.7
269,866 - MPMX19_05561 0.40 -0.6
269,866 - MPMX19_05561 0.40 +0.5
269,866 - MPMX19_05561 0.40 +0.5
269,985 + MPMX19_05561 0.58 -0.4
269,985 + MPMX19_05561 0.58 -2.2
269,985 + MPMX19_05561 0.58 +1.6
269,985 + MPMX19_05561 0.58 -0.8
269,985 + MPMX19_05561 0.58 -0.8
269,986 - MPMX19_05561 0.58 +0.4
269,986 - MPMX19_05561 0.58 +0.1
269,986 - MPMX19_05561 0.58 +0.1
270,222 + -0.3
270,222 + -1.9
270,222 + -0.0
270,222 + -2.2
270,223 - -0.3
270,223 - +0.7
270,223 - -0.4
270,223 - -1.4
270,223 - +0.2
270,223 - +0.1

Or see this region's nucleotide sequence