Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04960 and MPMX19_04961 are separated by 566 nucleotides MPMX19_04961 and MPMX19_04962 are separated by 64 nucleotides MPMX19_04962 and MPMX19_04963 are separated by 87 nucleotides
MPMX19_04960: MPMX19_04960 - hypothetical protein, at 423,396 to 424,202
_04960
MPMX19_04961: MPMX19_04961 - hypothetical protein, at 424,769 to 425,533
_04961
MPMX19_04962: MPMX19_04962 - hypothetical protein, at 425,598 to 426,269
_04962
MPMX19_04963: MPMX19_04963 - Cysteine desulfurase IscS, at 426,357 to 427,499
_04963
Position (kb) 424
425
426 Strain fitness (log2 ratio) -2
-1
0
1 at 423.794 kb on + strand, within MPMX19_04960 at 423.844 kb on + strand, within MPMX19_04960 at 423.845 kb on - strand, within MPMX19_04960 at 423.845 kb on - strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.905 kb on + strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.906 kb on - strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.907 kb on + strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.908 kb on - strand, within MPMX19_04960 at 423.943 kb on + strand, within MPMX19_04960 at 423.943 kb on + strand, within MPMX19_04960 at 423.943 kb on + strand, within MPMX19_04960 at 423.943 kb on + strand, within MPMX19_04960 at 423.944 kb on - strand, within MPMX19_04960 at 424.194 kb on + strand at 424.194 kb on + strand at 424.194 kb on + strand at 424.195 kb on - strand at 424.195 kb on - strand at 424.268 kb on + strand at 424.277 kb on + strand at 424.278 kb on - strand at 424.285 kb on - strand at 424.497 kb on + strand at 424.498 kb on - strand at 424.608 kb on + strand at 424.608 kb on + strand at 424.706 kb on - strand at 424.706 kb on - strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.792 kb on + strand at 424.793 kb on - strand at 424.815 kb on + strand at 424.845 kb on + strand at 424.845 kb on + strand at 424.846 kb on - strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.009 kb on + strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.010 kb on - strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.012 kb on + strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.013 kb on - strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.051 kb on + strand, within MPMX19_04961 at 425.052 kb on - strand, within MPMX19_04961 at 425.052 kb on - strand, within MPMX19_04961 at 425.052 kb on - strand, within MPMX19_04961 at 425.052 kb on - strand, within MPMX19_04961 at 425.052 kb on - strand, within MPMX19_04961 at 425.337 kb on - strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.429 kb on + strand, within MPMX19_04961 at 425.430 kb on - strand, within MPMX19_04961 at 425.430 kb on - strand, within MPMX19_04961 at 425.430 kb on - strand, within MPMX19_04961 at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.618 kb on - strand at 425.618 kb on - strand at 425.618 kb on - strand at 425.618 kb on - strand at 426.049 kb on + strand, within MPMX19_04962 at 426.050 kb on - strand, within MPMX19_04962 at 426.050 kb on - strand, within MPMX19_04962
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 423,794 + MPMX19_04960 0.49 +1.3 423,844 + MPMX19_04960 0.56 -1.3 423,845 - MPMX19_04960 0.56 -1.7 423,845 - MPMX19_04960 0.56 -1.7 423,905 + MPMX19_04960 0.63 -0.5 423,905 + MPMX19_04960 0.63 -0.5 423,905 + MPMX19_04960 0.63 -1.1 423,905 + MPMX19_04960 0.63 +0.2 423,905 + MPMX19_04960 0.63 -0.1 423,905 + MPMX19_04960 0.63 -0.7 423,905 + MPMX19_04960 0.63 -0.1 423,905 + MPMX19_04960 0.63 -0.5 423,905 + MPMX19_04960 0.63 -0.1 423,905 + MPMX19_04960 0.63 +0.1 423,905 + MPMX19_04960 0.63 +1.1 423,905 + MPMX19_04960 0.63 -2.2 423,905 + MPMX19_04960 0.63 -0.3 423,905 + MPMX19_04960 0.63 -1.3 423,905 + MPMX19_04960 0.63 -0.5 423,905 + MPMX19_04960 0.63 +0.4 423,905 + MPMX19_04960 0.63 -0.1 423,906 - MPMX19_04960 0.63 +1.2 423,906 - MPMX19_04960 0.63 +0.2 423,906 - MPMX19_04960 0.63 +0.3 423,906 - MPMX19_04960 0.63 -1.0 423,906 - MPMX19_04960 0.63 -2.4 423,906 - MPMX19_04960 0.63 -1.1 423,906 - MPMX19_04960 0.63 -0.2 423,906 - MPMX19_04960 0.63 -1.8 423,906 - MPMX19_04960 0.63 -0.2 423,906 - MPMX19_04960 0.63 -0.6 423,906 - MPMX19_04960 0.63 +0.7 423,906 - MPMX19_04960 0.63 +0.1 423,906 - MPMX19_04960 0.63 -0.3 423,906 - MPMX19_04960 0.63 -0.6 423,906 - MPMX19_04960 0.63 -2.0 423,907 + MPMX19_04960 0.63 -0.3 423,907 + MPMX19_04960 0.63 +0.0 423,907 + MPMX19_04960 0.63 -0.4 423,907 + MPMX19_04960 0.63 -0.3 423,907 + MPMX19_04960 0.63 -0.9 423,907 + MPMX19_04960 0.63 +0.1 423,907 + MPMX19_04960 0.63 -0.7 423,907 + MPMX19_04960 0.63 +1.2 423,907 + MPMX19_04960 0.63 +1.5 423,907 + MPMX19_04960 0.63 -0.3 423,907 + MPMX19_04960 0.63 -0.3 423,907 + MPMX19_04960 0.63 +0.4 423,907 + MPMX19_04960 0.63 -1.5 423,907 + MPMX19_04960 0.63 -1.5 423,907 + MPMX19_04960 0.63 -0.5 423,907 + MPMX19_04960 0.63 -1.1 423,907 + MPMX19_04960 0.63 -0.9 423,907 + MPMX19_04960 0.63 +0.6 423,907 + MPMX19_04960 0.63 -0.1 423,907 + MPMX19_04960 0.63 -0.5 423,908 - MPMX19_04960 0.63 +0.4 423,908 - MPMX19_04960 0.63 -0.6 423,908 - MPMX19_04960 0.63 -0.6 423,908 - MPMX19_04960 0.63 +0.8 423,908 - MPMX19_04960 0.63 -0.8 423,908 - MPMX19_04960 0.63 +0.6 423,908 - MPMX19_04960 0.63 -1.1 423,908 - MPMX19_04960 0.63 -0.4 423,908 - MPMX19_04960 0.63 +0.3 423,908 - MPMX19_04960 0.63 -0.6 423,908 - MPMX19_04960 0.63 -0.1 423,908 - MPMX19_04960 0.63 -1.8 423,908 - MPMX19_04960 0.63 -2.6 423,943 + MPMX19_04960 0.68 +0.3 423,943 + MPMX19_04960 0.68 +1.6 423,943 + MPMX19_04960 0.68 -1.7 423,943 + MPMX19_04960 0.68 +0.4 423,944 - MPMX19_04960 0.68 +0.6 424,194 + -0.1 424,194 + +0.1 424,194 + -0.8 424,195 - -0.2 424,195 - -0.8 424,268 + -0.4 424,277 + -0.7 424,278 - +0.3 424,285 - +0.2 424,497 + -1.4 424,498 - -0.3 424,608 + +0.7 424,608 + +0.8 424,706 - -2.4 424,706 - -1.0 424,792 + +0.4 424,792 + -1.2 424,792 + -0.7 424,792 + +0.5 424,792 + +0.1 424,792 + +0.1 424,792 + -2.1 424,793 - +0.3 424,815 + -0.0 424,845 + -0.4 424,845 + +0.1 424,846 - MPMX19_04961 0.10 -2.0 425,009 + MPMX19_04961 0.31 -1.2 425,009 + MPMX19_04961 0.31 +0.2 425,009 + MPMX19_04961 0.31 +0.3 425,009 + MPMX19_04961 0.31 +0.8 425,009 + MPMX19_04961 0.31 -0.7 425,009 + MPMX19_04961 0.31 +0.2 425,009 + MPMX19_04961 0.31 -0.8 425,009 + MPMX19_04961 0.31 -0.7 425,009 + MPMX19_04961 0.31 -1.5 425,009 + MPMX19_04961 0.31 +0.1 425,010 - MPMX19_04961 0.32 -0.9 425,010 - MPMX19_04961 0.32 +0.3 425,010 - MPMX19_04961 0.32 -0.2 425,010 - MPMX19_04961 0.32 -0.6 425,010 - MPMX19_04961 0.32 +0.5 425,010 - MPMX19_04961 0.32 -0.5 425,010 - MPMX19_04961 0.32 -0.3 425,010 - MPMX19_04961 0.32 -0.6 425,010 - MPMX19_04961 0.32 -2.0 425,010 - MPMX19_04961 0.32 -1.3 425,010 - MPMX19_04961 0.32 -0.9 425,010 - MPMX19_04961 0.32 -0.1 425,012 + MPMX19_04961 0.32 -2.0 425,012 + MPMX19_04961 0.32 -0.4 425,012 + MPMX19_04961 0.32 -0.3 425,012 + MPMX19_04961 0.32 -1.5 425,012 + MPMX19_04961 0.32 -0.6 425,012 + MPMX19_04961 0.32 -0.1 425,012 + MPMX19_04961 0.32 -0.1 425,012 + MPMX19_04961 0.32 -0.1 425,012 + MPMX19_04961 0.32 -0.5 425,013 - MPMX19_04961 0.32 +0.4 425,013 - MPMX19_04961 0.32 +0.6 425,013 - MPMX19_04961 0.32 -0.4 425,013 - MPMX19_04961 0.32 -2.4 425,013 - MPMX19_04961 0.32 -0.5 425,013 - MPMX19_04961 0.32 +1.3 425,013 - MPMX19_04961 0.32 -0.3 425,013 - MPMX19_04961 0.32 +0.4 425,013 - MPMX19_04961 0.32 -1.4 425,013 - MPMX19_04961 0.32 +0.5 425,051 + MPMX19_04961 0.37 +1.1 425,051 + MPMX19_04961 0.37 +0.3 425,051 + MPMX19_04961 0.37 +0.3 425,051 + MPMX19_04961 0.37 -1.7 425,051 + MPMX19_04961 0.37 +0.7 425,051 + MPMX19_04961 0.37 -2.2 425,051 + MPMX19_04961 0.37 -1.5 425,052 - MPMX19_04961 0.37 -0.9 425,052 - MPMX19_04961 0.37 -0.5 425,052 - MPMX19_04961 0.37 +0.1 425,052 - MPMX19_04961 0.37 -2.2 425,052 - MPMX19_04961 0.37 -1.0 425,337 - MPMX19_04961 0.74 -1.0 425,411 + MPMX19_04961 0.84 -1.0 425,411 + MPMX19_04961 0.84 +0.4 425,411 + MPMX19_04961 0.84 -1.7 425,411 + MPMX19_04961 0.84 +0.4 425,411 + MPMX19_04961 0.84 -0.3 425,411 + MPMX19_04961 0.84 -1.0 425,411 + MPMX19_04961 0.84 +0.3 425,411 + MPMX19_04961 0.84 +0.1 425,412 - MPMX19_04961 0.84 +0.2 425,412 - MPMX19_04961 0.84 -0.4 425,412 - MPMX19_04961 0.84 -1.1 425,412 - MPMX19_04961 0.84 +1.5 425,412 - MPMX19_04961 0.84 -0.4 425,412 - MPMX19_04961 0.84 -0.7 425,412 - MPMX19_04961 0.84 -0.9 425,429 + MPMX19_04961 0.86 -0.2 425,430 - MPMX19_04961 0.86 -2.5 425,430 - MPMX19_04961 0.86 -0.9 425,430 - MPMX19_04961 0.86 -0.5 425,617 + -0.9 425,617 + -0.5 425,617 + -0.4 425,617 + -0.0 425,617 + +0.8 425,617 + -1.3 425,618 - -0.7 425,618 - -0.3 425,618 - -1.0 425,618 - -2.1 426,049 + MPMX19_04962 0.67 +0.6 426,050 - MPMX19_04962 0.67 -0.5 426,050 - MPMX19_04962 0.67 +0.7
Or see this region's nucleotide sequence