Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04465 and MPMX19_04466 are separated by 168 nucleotides MPMX19_04466 and MPMX19_04467 are separated by 216 nucleotides MPMX19_04467 and MPMX19_04468 are separated by 206 nucleotides
MPMX19_04465: MPMX19_04465 - Pantothenate synthetase, at 832,642 to 833,550
_04465
MPMX19_04466: MPMX19_04466 - hypothetical protein, at 833,719 to 833,883
_04466
MPMX19_04467: MPMX19_04467 - tRNA-Val, at 834,100 to 834,174
_04467
MPMX19_04468: MPMX19_04468 - hypothetical protein, at 834,381 to 835,286
_04468
Position (kb) 833
834 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.780 kb on - strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.923 kb on - strand, within MPMX19_04465 at 832.923 kb on - strand, within MPMX19_04465 at 832.923 kb on - strand, within MPMX19_04465 at 832.923 kb on - strand, within MPMX19_04465 at 832.923 kb on - strand, within MPMX19_04465 at 833.039 kb on + strand, within MPMX19_04465 at 833.039 kb on + strand, within MPMX19_04465 at 833.039 kb on + strand, within MPMX19_04465 at 833.039 kb on + strand, within MPMX19_04465 at 833.040 kb on - strand, within MPMX19_04465 at 833.040 kb on - strand, within MPMX19_04465 at 833.040 kb on - strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.219 kb on + strand, within MPMX19_04465 at 833.219 kb on + strand, within MPMX19_04465 at 833.219 kb on + strand, within MPMX19_04465 at 833.220 kb on - strand, within MPMX19_04465 at 833.635 kb on + strand at 833.636 kb on - strand at 833.636 kb on - strand at 833.636 kb on - strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.647 kb on - strand at 833.647 kb on - strand at 833.647 kb on - strand at 833.647 kb on - strand at 833.727 kb on + strand at 833.747 kb on + strand, within MPMX19_04466 at 833.747 kb on + strand, within MPMX19_04466 at 833.748 kb on + strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.874 kb on + strand at 833.928 kb on + strand at 833.928 kb on + strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.933 kb on + strand at 833.933 kb on + strand at 833.933 kb on + strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.990 kb on + strand at 833.990 kb on + strand at 833.991 kb on - strand at 833.991 kb on - strand at 834.098 kb on - strand at 834.098 kb on - strand at 834.098 kb on - strand at 834.300 kb on + strand at 834.301 kb on - strand at 834.301 kb on - strand at 834.301 kb on - strand at 834.531 kb on + strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.765 kb on + strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468 at 834.766 kb on - strand, within MPMX19_04468
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 832,772 + MPMX19_04465 0.14 -1.7 832,772 + MPMX19_04465 0.14 -0.0 832,772 + MPMX19_04465 0.14 -0.2 832,772 + MPMX19_04465 0.14 +0.5 832,772 + MPMX19_04465 0.14 -0.6 832,772 + MPMX19_04465 0.14 +0.2 832,772 + MPMX19_04465 0.14 +0.8 832,772 + MPMX19_04465 0.14 +1.0 832,772 + MPMX19_04465 0.14 +0.8 832,772 + MPMX19_04465 0.14 +0.8 832,773 - MPMX19_04465 0.14 -2.3 832,773 - MPMX19_04465 0.14 -0.0 832,773 - MPMX19_04465 0.14 -1.9 832,773 - MPMX19_04465 0.14 +0.1 832,773 - MPMX19_04465 0.14 -1.6 832,773 - MPMX19_04465 0.14 +0.2 832,773 - MPMX19_04465 0.14 -1.0 832,773 - MPMX19_04465 0.14 -0.8 832,773 - MPMX19_04465 0.14 -0.8 832,773 - MPMX19_04465 0.14 -1.8 832,773 - MPMX19_04465 0.14 +0.2 832,773 - MPMX19_04465 0.14 -2.8 832,773 - MPMX19_04465 0.14 -0.9 832,780 - MPMX19_04465 0.15 +0.1 832,922 + MPMX19_04465 0.31 +1.2 832,922 + MPMX19_04465 0.31 -0.2 832,922 + MPMX19_04465 0.31 +0.1 832,922 + MPMX19_04465 0.31 +1.1 832,922 + MPMX19_04465 0.31 -1.6 832,922 + MPMX19_04465 0.31 -1.2 832,922 + MPMX19_04465 0.31 +1.0 832,923 - MPMX19_04465 0.31 -0.3 832,923 - MPMX19_04465 0.31 -0.2 832,923 - MPMX19_04465 0.31 -2.1 832,923 - MPMX19_04465 0.31 -0.6 832,923 - MPMX19_04465 0.31 -1.4 833,039 + MPMX19_04465 0.44 -0.4 833,039 + MPMX19_04465 0.44 -0.4 833,039 + MPMX19_04465 0.44 -0.3 833,039 + MPMX19_04465 0.44 +0.6 833,040 - MPMX19_04465 0.44 +0.7 833,040 - MPMX19_04465 0.44 -0.2 833,040 - MPMX19_04465 0.44 -0.3 833,195 + MPMX19_04465 0.61 +1.0 833,195 + MPMX19_04465 0.61 +0.2 833,195 + MPMX19_04465 0.61 +0.2 833,195 + MPMX19_04465 0.61 +1.4 833,195 + MPMX19_04465 0.61 -1.5 833,195 + MPMX19_04465 0.61 -0.8 833,195 + MPMX19_04465 0.61 +0.2 833,196 - MPMX19_04465 0.61 +0.8 833,196 - MPMX19_04465 0.61 -1.6 833,196 - MPMX19_04465 0.61 +0.4 833,196 - MPMX19_04465 0.61 -2.7 833,196 - MPMX19_04465 0.61 -0.2 833,196 - MPMX19_04465 0.61 +0.7 833,196 - MPMX19_04465 0.61 -0.2 833,196 - MPMX19_04465 0.61 -0.5 833,219 + MPMX19_04465 0.63 -1.9 833,219 + MPMX19_04465 0.63 +3.1 833,219 + MPMX19_04465 0.63 +0.9 833,220 - MPMX19_04465 0.64 -0.2 833,635 + -2.9 833,636 - -0.5 833,636 - -0.2 833,636 - -0.7 833,646 + +0.4 833,646 + +0.6 833,646 + -0.1 833,646 + -0.6 833,646 + -0.3 833,647 - -1.9 833,647 - -0.1 833,647 - -0.6 833,647 - +0.6 833,727 + +0.4 833,747 + MPMX19_04466 0.17 -0.5 833,747 + MPMX19_04466 0.17 +0.2 833,748 + MPMX19_04466 0.18 +0.2 833,748 - MPMX19_04466 0.18 -1.2 833,748 - MPMX19_04466 0.18 -0.5 833,748 - MPMX19_04466 0.18 -1.1 833,748 - MPMX19_04466 0.18 -1.5 833,748 - MPMX19_04466 0.18 -0.4 833,748 - MPMX19_04466 0.18 -1.7 833,874 + -0.6 833,928 + -1.8 833,928 + +0.4 833,929 - -0.1 833,929 - -0.3 833,929 - +0.5 833,929 - +0.2 833,929 - +1.3 833,929 - +0.7 833,933 + -2.8 833,933 + +0.7 833,933 + +1.6 833,934 - -1.0 833,934 - +1.1 833,934 - -1.3 833,934 - -2.1 833,934 - +1.1 833,934 - +0.4 833,934 - -0.9 833,934 - -0.9 833,990 + +0.7 833,990 + -1.3 833,991 - +0.2 833,991 - +0.7 834,098 - -2.1 834,098 - -1.8 834,098 - -1.6 834,300 + +0.9 834,301 - -0.2 834,301 - -3.1 834,301 - -2.3 834,531 + MPMX19_04468 0.17 +0.1 834,532 - MPMX19_04468 0.17 +0.3 834,532 - MPMX19_04468 0.17 +0.1 834,532 - MPMX19_04468 0.17 +0.5 834,532 - MPMX19_04468 0.17 +0.1 834,765 + MPMX19_04468 0.42 -0.2 834,765 + MPMX19_04468 0.42 -0.7 834,765 + MPMX19_04468 0.42 -2.2 834,765 + MPMX19_04468 0.42 +0.3 834,765 + MPMX19_04468 0.42 -0.3 834,765 + MPMX19_04468 0.42 -1.4 834,765 + MPMX19_04468 0.42 +0.4 834,765 + MPMX19_04468 0.42 -1.9 834,765 + MPMX19_04468 0.42 -0.9 834,765 + MPMX19_04468 0.42 -0.7 834,766 - MPMX19_04468 0.42 +0.4 834,766 - MPMX19_04468 0.42 -0.6 834,766 - MPMX19_04468 0.42 -1.2 834,766 - MPMX19_04468 0.42 -0.5 834,766 - MPMX19_04468 0.42 +0.5
Or see this region's nucleotide sequence