Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04336

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04335 and MPMX19_04336 are separated by 122 nucleotidesMPMX19_04336 and MPMX19_04337 are separated by 129 nucleotides MPMX19_04335: MPMX19_04335 - Aminopeptidase N, at 698,654 to 701,311 _04335 MPMX19_04336: MPMX19_04336 - Cytochrome c2, at 701,434 to 701,814 _04336 MPMX19_04337: MPMX19_04337 - hypothetical protein, at 701,944 to 702,660 _04337 Position (kb) 701 702Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 700.469 kb on + strand, within MPMX19_04335at 700.469 kb on + strand, within MPMX19_04335at 700.469 kb on + strand, within MPMX19_04335at 700.469 kb on + strand, within MPMX19_04335at 700.469 kb on + strand, within MPMX19_04335at 700.469 kb on + strand, within MPMX19_04335at 700.469 kb on + strand, within MPMX19_04335at 700.469 kb on + strand, within MPMX19_04335at 700.470 kb on - strand, within MPMX19_04335at 700.470 kb on - strand, within MPMX19_04335at 700.470 kb on - strand, within MPMX19_04335at 700.470 kb on - strand, within MPMX19_04335at 700.470 kb on - strand, within MPMX19_04335at 700.470 kb on - strand, within MPMX19_04335at 700.556 kb on + strand, within MPMX19_04335at 700.556 kb on + strand, within MPMX19_04335at 700.556 kb on + strand, within MPMX19_04335at 700.556 kb on + strand, within MPMX19_04335at 700.557 kb on - strand, within MPMX19_04335at 700.557 kb on - strand, within MPMX19_04335at 700.557 kb on - strand, within MPMX19_04335at 700.557 kb on - strand, within MPMX19_04335at 700.557 kb on - strand, within MPMX19_04335at 700.557 kb on - strand, within MPMX19_04335at 700.557 kb on - strand, within MPMX19_04335at 700.664 kb on + strand, within MPMX19_04335at 700.664 kb on + strand, within MPMX19_04335at 700.665 kb on - strand, within MPMX19_04335at 700.665 kb on - strand, within MPMX19_04335at 700.665 kb on - strand, within MPMX19_04335at 700.748 kb on + strand, within MPMX19_04335at 700.748 kb on + strand, within MPMX19_04335at 700.748 kb on + strand, within MPMX19_04335at 700.748 kb on + strand, within MPMX19_04335at 700.748 kb on + strand, within MPMX19_04335at 700.749 kb on - strand, within MPMX19_04335at 700.749 kb on - strand, within MPMX19_04335at 700.799 kb on + strand, within MPMX19_04335at 700.800 kb on - strand, within MPMX19_04335at 700.800 kb on - strand, within MPMX19_04335at 700.895 kb on + strand, within MPMX19_04335at 700.895 kb on + strand, within MPMX19_04335at 700.895 kb on + strand, within MPMX19_04335at 700.895 kb on + strand, within MPMX19_04335at 700.895 kb on + strand, within MPMX19_04335at 700.895 kb on + strand, within MPMX19_04335at 700.895 kb on + strand, within MPMX19_04335at 700.896 kb on - strand, within MPMX19_04335at 700.896 kb on - strand, within MPMX19_04335at 700.896 kb on - strand, within MPMX19_04335at 700.896 kb on - strand, within MPMX19_04335at 700.896 kb on - strand, within MPMX19_04335at 700.944 kb on + strand, within MPMX19_04335at 700.944 kb on + strand, within MPMX19_04335at 700.944 kb on + strand, within MPMX19_04335at 700.945 kb on - strand, within MPMX19_04335at 700.945 kb on - strand, within MPMX19_04335at 701.036 kb on + strand, within MPMX19_04335at 701.036 kb on + strand, within MPMX19_04335at 701.036 kb on + strand, within MPMX19_04335at 701.036 kb on + strand, within MPMX19_04335at 701.036 kb on + strand, within MPMX19_04335at 701.036 kb on + strand, within MPMX19_04335at 701.037 kb on - strand, within MPMX19_04335at 701.037 kb on - strand, within MPMX19_04335at 701.037 kb on - strand, within MPMX19_04335at 701.037 kb on - strand, within MPMX19_04335at 701.037 kb on - strand, within MPMX19_04335at 701.195 kb on + strandat 701.196 kb on - strandat 701.273 kb on + strandat 701.273 kb on + strandat 701.273 kb on + strandat 701.274 kb on - strandat 701.274 kb on - strandat 701.274 kb on - strandat 701.274 kb on - strandat 701.274 kb on - strandat 701.274 kb on - strandat 701.274 kb on - strandat 701.274 kb on - strandat 701.330 kb on + strandat 701.330 kb on + strandat 701.330 kb on + strandat 701.331 kb on - strandat 701.331 kb on - strandat 701.331 kb on - strandat 701.331 kb on - strandat 701.331 kb on - strandat 701.435 kb on + strandat 701.435 kb on + strandat 701.435 kb on + strandat 701.435 kb on + strandat 701.435 kb on + strandat 701.435 kb on + strandat 701.435 kb on + strandat 701.435 kb on + strandat 701.435 kb on + strandat 701.435 kb on + strandat 701.435 kb on + strandat 701.435 kb on + strandat 701.435 kb on + strandat 701.435 kb on + strandat 701.435 kb on + strandat 701.436 kb on - strandat 701.436 kb on - strandat 701.436 kb on - strandat 701.436 kb on - strandat 701.436 kb on - strandat 701.436 kb on - strandat 701.436 kb on - strandat 701.436 kb on - strandat 701.436 kb on - strandat 701.436 kb on - strandat 701.436 kb on - strandat 701.436 kb on - strandat 701.436 kb on - strandat 701.436 kb on - strandat 701.543 kb on + strand, within MPMX19_04336at 701.543 kb on + strand, within MPMX19_04336at 701.543 kb on + strand, within MPMX19_04336at 701.543 kb on + strand, within MPMX19_04336at 701.543 kb on + strand, within MPMX19_04336at 701.543 kb on + strand, within MPMX19_04336at 701.543 kb on + strand, within MPMX19_04336at 701.543 kb on + strand, within MPMX19_04336at 701.543 kb on + strand, within MPMX19_04336at 701.543 kb on + strand, within MPMX19_04336at 701.543 kb on + strand, within MPMX19_04336at 701.543 kb on + strand, within MPMX19_04336at 701.543 kb on + strand, within MPMX19_04336at 701.543 kb on + strand, within MPMX19_04336at 701.544 kb on - strand, within MPMX19_04336at 701.544 kb on - strand, within MPMX19_04336at 701.544 kb on - strand, within MPMX19_04336at 701.544 kb on - strand, within MPMX19_04336at 701.544 kb on - strand, within MPMX19_04336at 701.544 kb on - strand, within MPMX19_04336at 701.544 kb on - strand, within MPMX19_04336at 701.544 kb on - strand, within MPMX19_04336at 701.544 kb on - strand, within MPMX19_04336at 701.544 kb on - strand, within MPMX19_04336at 701.544 kb on - strand, within MPMX19_04336at 701.544 kb on - strand, within MPMX19_04336at 701.544 kb on - strand, within MPMX19_04336at 701.544 kb on - strand, within MPMX19_04336at 701.544 kb on - strand, within MPMX19_04336at 701.609 kb on + strand, within MPMX19_04336at 701.609 kb on + strand, within MPMX19_04336at 701.609 kb on + strand, within MPMX19_04336at 701.609 kb on + strand, within MPMX19_04336at 701.609 kb on + strand, within MPMX19_04336at 701.609 kb on + strand, within MPMX19_04336at 701.609 kb on + strand, within MPMX19_04336at 701.609 kb on + strand, within MPMX19_04336at 701.610 kb on - strand, within MPMX19_04336at 701.878 kb on + strandat 701.878 kb on + strandat 701.878 kb on + strandat 701.878 kb on + strandat 701.878 kb on + strandat 701.878 kb on + strandat 701.878 kb on + strandat 701.878 kb on + strandat 701.878 kb on + strandat 701.878 kb on + strandat 701.878 kb on + strandat 701.878 kb on + strandat 701.878 kb on + strandat 701.878 kb on + strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.965 kb on + strandat 701.966 kb on - strandat 701.966 kb on - strandat 701.966 kb on - strandat 701.966 kb on - strandat 702.008 kb on + strandat 702.008 kb on + strandat 702.008 kb on + strandat 702.008 kb on + strandat 702.008 kb on + strandat 702.009 kb on - strandat 702.009 kb on - strandat 702.134 kb on + strand, within MPMX19_04337at 702.134 kb on + strand, within MPMX19_04337at 702.134 kb on + strand, within MPMX19_04337at 702.134 kb on + strand, within MPMX19_04337at 702.134 kb on + strand, within MPMX19_04337at 702.134 kb on + strand, within MPMX19_04337at 702.134 kb on + strand, within MPMX19_04337at 702.135 kb on - strand, within MPMX19_04337at 702.135 kb on - strand, within MPMX19_04337at 702.341 kb on + strand, within MPMX19_04337at 702.341 kb on + strand, within MPMX19_04337at 702.341 kb on + strand, within MPMX19_04337at 702.341 kb on + strand, within MPMX19_04337at 702.341 kb on + strand, within MPMX19_04337at 702.341 kb on + strand, within MPMX19_04337at 702.342 kb on - strand, within MPMX19_04337at 702.342 kb on - strand, within MPMX19_04337at 702.342 kb on - strand, within MPMX19_04337at 702.342 kb on - strand, within MPMX19_04337at 702.342 kb on - strand, within MPMX19_04337at 702.342 kb on - strand, within MPMX19_04337at 702.342 kb on - strand, within MPMX19_04337at 702.342 kb on - strand, within MPMX19_04337at 702.342 kb on - strand, within MPMX19_04337at 702.342 kb on - strand, within MPMX19_04337at 702.342 kb on - strand, within MPMX19_04337at 702.342 kb on - strand, within MPMX19_04337at 702.342 kb on - strand, within MPMX19_04337at 702.440 kb on + strand, within MPMX19_04337at 702.440 kb on + strand, within MPMX19_04337at 702.441 kb on - strand, within MPMX19_04337at 702.441 kb on - strand, within MPMX19_04337at 702.441 kb on - strand, within MPMX19_04337at 702.441 kb on - strand, within MPMX19_04337at 702.441 kb on - strand, within MPMX19_04337at 702.441 kb on - strand, within MPMX19_04337at 702.741 kb on - strandat 702.741 kb on - strandat 702.752 kb on + strandat 702.752 kb on + strandat 702.752 kb on + strandat 702.752 kb on + strandat 702.752 kb on + strandat 702.752 kb on + strandat 702.752 kb on + strandat 702.752 kb on + strandat 702.753 kb on - strandat 702.753 kb on - strandat 702.753 kb on - strandat 702.753 kb on - strandat 702.753 kb on - strandat 702.753 kb on - strandat 702.759 kb on + strandat 702.759 kb on + strandat 702.759 kb on + strandat 702.759 kb on + strandat 702.759 kb on + strandat 702.759 kb on + strandat 702.759 kb on + strandat 702.759 kb on + strandat 702.760 kb on - strandat 702.760 kb on - strandat 702.760 kb on - strandat 702.760 kb on - strandat 702.760 kb on - strandat 702.760 kb on - strandat 702.760 kb on - strandat 702.760 kb on - strandat 702.760 kb on - strandat 702.760 kb on - strandat 702.803 kb on + strandat 702.803 kb on + strandat 702.803 kb on + strandat 702.803 kb on + strandat 702.803 kb on + strandat 702.804 kb on - strandat 702.804 kb on - strandat 702.804 kb on - strandat 702.804 kb on - strandat 702.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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700,469 + MPMX19_04335 0.68 -0.4
700,469 + MPMX19_04335 0.68 -0.6
700,469 + MPMX19_04335 0.68 -1.3
700,469 + MPMX19_04335 0.68 -1.8
700,469 + MPMX19_04335 0.68 -0.9
700,469 + MPMX19_04335 0.68 +2.0
700,469 + MPMX19_04335 0.68 +0.7
700,469 + MPMX19_04335 0.68 +0.8
700,470 - MPMX19_04335 0.68 +0.5
700,470 - MPMX19_04335 0.68 +0.2
700,470 - MPMX19_04335 0.68 -0.8
700,470 - MPMX19_04335 0.68 -0.3
700,470 - MPMX19_04335 0.68 -1.8
700,470 - MPMX19_04335 0.68 -0.3
700,556 + MPMX19_04335 0.72 -0.0
700,556 + MPMX19_04335 0.72 -0.0
700,556 + MPMX19_04335 0.72 +1.4
700,556 + MPMX19_04335 0.72 +0.0
700,557 - MPMX19_04335 0.72 -0.1
700,557 - MPMX19_04335 0.72 -1.5
700,557 - MPMX19_04335 0.72 +0.7
700,557 - MPMX19_04335 0.72 +0.2
700,557 - MPMX19_04335 0.72 -0.6
700,557 - MPMX19_04335 0.72 -0.4
700,557 - MPMX19_04335 0.72 +0.4
700,664 + MPMX19_04335 0.76 -0.0
700,664 + MPMX19_04335 0.76 -2.5
700,665 - MPMX19_04335 0.76 +0.4
700,665 - MPMX19_04335 0.76 +0.3
700,665 - MPMX19_04335 0.76 -0.8
700,748 + MPMX19_04335 0.79 -0.6
700,748 + MPMX19_04335 0.79 +0.0
700,748 + MPMX19_04335 0.79 +1.4
700,748 + MPMX19_04335 0.79 -0.3
700,748 + MPMX19_04335 0.79 +0.1
700,749 - MPMX19_04335 0.79 +0.2
700,749 - MPMX19_04335 0.79 -0.2
700,799 + MPMX19_04335 0.81 +0.9
700,800 - MPMX19_04335 0.81 +0.7
700,800 - MPMX19_04335 0.81 +0.0
700,895 + MPMX19_04335 0.84 +0.7
700,895 + MPMX19_04335 0.84 -0.7
700,895 + MPMX19_04335 0.84 -0.4
700,895 + MPMX19_04335 0.84 +0.7
700,895 + MPMX19_04335 0.84 -1.1
700,895 + MPMX19_04335 0.84 -0.7
700,895 + MPMX19_04335 0.84 +0.2
700,896 - MPMX19_04335 0.84 +0.1
700,896 - MPMX19_04335 0.84 +1.3
700,896 - MPMX19_04335 0.84 +0.8
700,896 - MPMX19_04335 0.84 -0.3
700,896 - MPMX19_04335 0.84 -0.4
700,944 + MPMX19_04335 0.86 -0.7
700,944 + MPMX19_04335 0.86 -0.3
700,944 + MPMX19_04335 0.86 -2.1
700,945 - MPMX19_04335 0.86 +0.3
700,945 - MPMX19_04335 0.86 -0.3
701,036 + MPMX19_04335 0.90 -0.3
701,036 + MPMX19_04335 0.90 -0.8
701,036 + MPMX19_04335 0.90 -0.5
701,036 + MPMX19_04335 0.90 -2.0
701,036 + MPMX19_04335 0.90 +0.0
701,036 + MPMX19_04335 0.90 +0.6
701,037 - MPMX19_04335 0.90 -1.0
701,037 - MPMX19_04335 0.90 +0.2
701,037 - MPMX19_04335 0.90 +1.4
701,037 - MPMX19_04335 0.90 -0.9
701,037 - MPMX19_04335 0.90 -0.2
701,195 + -0.4
701,196 - +1.2
701,273 + -0.2
701,273 + -1.1
701,273 + -1.5
701,274 - +1.5
701,274 - -1.4
701,274 - -0.6
701,274 - -0.1
701,274 - +0.1
701,274 - -1.6
701,274 - +0.1
701,274 - -1.8
701,330 + +0.4
701,330 + +0.9
701,330 + -1.0
701,331 - -2.6
701,331 - -0.6
701,331 - -0.1
701,331 - +0.4
701,331 - +0.7
701,435 + +0.5
701,435 + +0.8
701,435 + -0.6
701,435 + -0.1
701,435 + -0.3
701,435 + +0.0
701,435 + -1.4
701,435 + +0.4
701,435 + -0.9
701,435 + +0.7
701,435 + -0.5
701,435 + +0.1
701,435 + -0.1
701,435 + +0.1
701,435 + -0.2
701,436 - -1.1
701,436 - +0.5
701,436 - -1.1
701,436 - +0.7
701,436 - +0.6
701,436 - -0.0
701,436 - -0.2
701,436 - -0.5
701,436 - -0.6
701,436 - +0.2
701,436 - -2.2
701,436 - -0.2
701,436 - +0.0
701,436 - +0.3
701,543 + MPMX19_04336 0.29 -2.4
701,543 + MPMX19_04336 0.29 -1.8
701,543 + MPMX19_04336 0.29 +1.2
701,543 + MPMX19_04336 0.29 +1.0
701,543 + MPMX19_04336 0.29 +1.3
701,543 + MPMX19_04336 0.29 -0.1
701,543 + MPMX19_04336 0.29 +1.9
701,543 + MPMX19_04336 0.29 -0.9
701,543 + MPMX19_04336 0.29 -0.7
701,543 + MPMX19_04336 0.29 +1.7
701,543 + MPMX19_04336 0.29 -0.3
701,543 + MPMX19_04336 0.29 +0.4
701,543 + MPMX19_04336 0.29 +0.4
701,543 + MPMX19_04336 0.29 +0.1
701,544 - MPMX19_04336 0.29 -0.4
701,544 - MPMX19_04336 0.29 -0.2
701,544 - MPMX19_04336 0.29 -0.6
701,544 - MPMX19_04336 0.29 +0.2
701,544 - MPMX19_04336 0.29 -0.9
701,544 - MPMX19_04336 0.29 -1.2
701,544 - MPMX19_04336 0.29 +0.6
701,544 - MPMX19_04336 0.29 +0.4
701,544 - MPMX19_04336 0.29 +1.4
701,544 - MPMX19_04336 0.29 +0.2
701,544 - MPMX19_04336 0.29 +0.2
701,544 - MPMX19_04336 0.29 +0.0
701,544 - MPMX19_04336 0.29 -2.2
701,544 - MPMX19_04336 0.29 -0.5
701,544 - MPMX19_04336 0.29 -0.1
701,609 + MPMX19_04336 0.46 +1.2
701,609 + MPMX19_04336 0.46 +0.3
701,609 + MPMX19_04336 0.46 -0.6
701,609 + MPMX19_04336 0.46 -1.3
701,609 + MPMX19_04336 0.46 -1.2
701,609 + MPMX19_04336 0.46 -0.3
701,609 + MPMX19_04336 0.46 -0.1
701,609 + MPMX19_04336 0.46 +0.7
701,610 - MPMX19_04336 0.46 -0.7
701,878 + -0.4
701,878 + -0.3
701,878 + +1.0
701,878 + +0.4
701,878 + +0.2
701,878 + +0.1
701,878 + +0.0
701,878 + +2.4
701,878 + +0.7
701,878 + +0.3
701,878 + +0.5
701,878 + +0.3
701,878 + -1.8
701,878 + -0.2
701,879 - -0.6
701,879 - -0.6
701,879 - -0.2
701,879 - -1.8
701,879 - +0.4
701,879 - +1.3
701,879 - -2.2
701,879 - +0.0
701,879 - +0.2
701,879 - +0.3
701,879 - +0.4
701,879 - -0.9
701,879 - -1.8
701,879 - -1.9
701,879 - -0.1
701,879 - +0.6
701,879 - -0.5
701,879 - +0.7
701,965 + +1.0
701,966 - -1.4
701,966 - -0.4
701,966 - -2.9
701,966 - -0.2
702,008 + +1.1
702,008 + +0.4
702,008 + +0.4
702,008 + +1.8
702,008 + +1.5
702,009 - +0.2
702,009 - -1.2
702,134 + MPMX19_04337 0.26 +1.0
702,134 + MPMX19_04337 0.26 +1.0
702,134 + MPMX19_04337 0.26 -1.9
702,134 + MPMX19_04337 0.26 -0.9
702,134 + MPMX19_04337 0.26 -0.3
702,134 + MPMX19_04337 0.26 +0.1
702,134 + MPMX19_04337 0.26 -0.0
702,135 - MPMX19_04337 0.27 -0.1
702,135 - MPMX19_04337 0.27 -2.4
702,341 + MPMX19_04337 0.55 +0.8
702,341 + MPMX19_04337 0.55 -0.6
702,341 + MPMX19_04337 0.55 +0.7
702,341 + MPMX19_04337 0.55 +0.9
702,341 + MPMX19_04337 0.55 +1.1
702,341 + MPMX19_04337 0.55 -0.7
702,342 - MPMX19_04337 0.56 -0.2
702,342 - MPMX19_04337 0.56 +1.2
702,342 - MPMX19_04337 0.56 +0.3
702,342 - MPMX19_04337 0.56 +0.2
702,342 - MPMX19_04337 0.56 +0.1
702,342 - MPMX19_04337 0.56 +0.2
702,342 - MPMX19_04337 0.56 -0.2
702,342 - MPMX19_04337 0.56 +0.1
702,342 - MPMX19_04337 0.56 -0.0
702,342 - MPMX19_04337 0.56 -1.9
702,342 - MPMX19_04337 0.56 +0.0
702,342 - MPMX19_04337 0.56 -1.4
702,342 - MPMX19_04337 0.56 +1.4
702,440 + MPMX19_04337 0.69 +0.8
702,440 + MPMX19_04337 0.69 +0.1
702,441 - MPMX19_04337 0.69 -0.5
702,441 - MPMX19_04337 0.69 +0.7
702,441 - MPMX19_04337 0.69 -0.3
702,441 - MPMX19_04337 0.69 +0.1
702,441 - MPMX19_04337 0.69 +0.4
702,441 - MPMX19_04337 0.69 +0.7
702,741 - +1.4
702,741 - -0.3
702,752 + +0.5
702,752 + -0.0
702,752 + -0.1
702,752 + -1.9
702,752 + -1.6
702,752 + -0.6
702,752 + +0.2
702,752 + +0.7
702,753 - -1.9
702,753 - +1.2
702,753 - -0.7
702,753 - +0.4
702,753 - -0.9
702,753 - -0.3
702,759 + -0.3
702,759 + -0.5
702,759 + +0.3
702,759 + -0.1
702,759 + -0.4
702,759 + -0.9
702,759 + +0.7
702,759 + -0.4
702,760 - +2.0
702,760 - -1.0
702,760 - +0.7
702,760 - +0.1
702,760 - +0.9
702,760 - -0.6
702,760 - +0.3
702,760 - -0.2
702,760 - +0.2
702,760 - -0.4
702,803 + -0.0
702,803 + +0.8
702,803 + -0.3
702,803 + +0.4
702,803 + +0.3
702,804 - +0.4
702,804 - -0.4
702,804 - -1.3
702,804 - +0.0
702,804 - +0.2

Or see this region's nucleotide sequence