Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04056

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04055 and MPMX19_04056 are separated by 139 nucleotidesMPMX19_04056 and MPMX19_04057 overlap by 4 nucleotidesMPMX19_04057 and MPMX19_04058 overlap by 4 nucleotides MPMX19_04055: MPMX19_04055 - 2,5-diketo-D-gluconic acid reductase B, at 358,881 to 359,705 _04055 MPMX19_04056: MPMX19_04056 - Aldehyde oxidoreductase molybdenum-binding subunit PaoC, at 359,845 to 362,130 _04056 MPMX19_04057: MPMX19_04057 - Aldehyde oxidoreductase FAD-binding subunit PaoB, at 362,127 to 363,116 _04057 MPMX19_04058: MPMX19_04058 - Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA, at 363,113 to 363,673 _04058 Position (kb) 359 360 361 362 363Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 358.860 kb on + strandat 358.860 kb on + strandat 358.860 kb on + strandat 359.037 kb on + strand, within MPMX19_04055at 359.037 kb on + strand, within MPMX19_04055at 359.037 kb on + strand, within MPMX19_04055at 359.037 kb on + strand, within MPMX19_04055at 359.038 kb on - strand, within MPMX19_04055at 359.038 kb on - strand, within MPMX19_04055at 359.038 kb on - strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.158 kb on + strand, within MPMX19_04055at 359.158 kb on + strand, within MPMX19_04055at 359.158 kb on + strand, within MPMX19_04055at 359.158 kb on + strand, within MPMX19_04055at 359.219 kb on - strand, within MPMX19_04055at 359.219 kb on - strand, within MPMX19_04055at 359.219 kb on - strand, within MPMX19_04055at 359.414 kb on + strand, within MPMX19_04055at 359.414 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.566 kb on + strand, within MPMX19_04055at 359.566 kb on + strand, within MPMX19_04055at 359.566 kb on + strand, within MPMX19_04055at 359.567 kb on - strand, within MPMX19_04055at 359.567 kb on - strand, within MPMX19_04055at 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.762 kb on + strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.763 kb on - strandat 359.903 kb on + strandat 359.903 kb on + strandat 359.903 kb on + strandat 359.903 kb on + strandat 359.903 kb on + strandat 359.903 kb on + strandat 359.903 kb on + strandat 359.904 kb on - strandat 359.904 kb on - strandat 359.999 kb on + strandat 359.999 kb on + strandat 360.044 kb on + strandat 360.044 kb on + strandat 360.044 kb on + strandat 360.044 kb on + strandat 360.044 kb on + strandat 360.044 kb on + strandat 360.045 kb on - strandat 360.263 kb on + strand, within MPMX19_04056at 360.263 kb on + strand, within MPMX19_04056at 360.264 kb on - strand, within MPMX19_04056at 360.264 kb on - strand, within MPMX19_04056at 360.264 kb on - strand, within MPMX19_04056at 360.264 kb on - strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.359 kb on + strand, within MPMX19_04056at 360.360 kb on - strand, within MPMX19_04056at 360.360 kb on - strand, within MPMX19_04056at 360.360 kb on - strand, within MPMX19_04056at 360.360 kb on - strand, within MPMX19_04056at 360.360 kb on - strand, within MPMX19_04056at 360.360 kb on - strand, within MPMX19_04056at 360.360 kb on - strand, within MPMX19_04056at 360.738 kb on - strand, within MPMX19_04056at 360.743 kb on + strand, within MPMX19_04056at 360.743 kb on + strand, within MPMX19_04056at 360.743 kb on + strand, within MPMX19_04056at 360.743 kb on + strand, within MPMX19_04056at 360.744 kb on - strand, within MPMX19_04056at 360.744 kb on - strand, within MPMX19_04056at 360.744 kb on - strand, within MPMX19_04056at 360.744 kb on - strand, within MPMX19_04056at 360.744 kb on - strand, within MPMX19_04056at 360.744 kb on - strand, within MPMX19_04056at 360.848 kb on + strand, within MPMX19_04056at 360.848 kb on + strand, within MPMX19_04056at 360.849 kb on - strand, within MPMX19_04056at 361.079 kb on + strand, within MPMX19_04056at 361.079 kb on + strand, within MPMX19_04056at 361.079 kb on + strand, within MPMX19_04056at 361.080 kb on - strand, within MPMX19_04056at 361.080 kb on - strand, within MPMX19_04056at 361.080 kb on - strand, within MPMX19_04056at 361.080 kb on - strand, within MPMX19_04056at 361.349 kb on + strand, within MPMX19_04056at 361.349 kb on + strand, within MPMX19_04056at 361.349 kb on + strand, within MPMX19_04056at 361.349 kb on + strand, within MPMX19_04056at 361.350 kb on - strand, within MPMX19_04056at 361.350 kb on - strand, within MPMX19_04056at 361.350 kb on - strand, within MPMX19_04056at 361.350 kb on - strand, within MPMX19_04056at 361.520 kb on + strand, within MPMX19_04056at 361.520 kb on + strand, within MPMX19_04056at 361.521 kb on - strand, within MPMX19_04056at 361.667 kb on + strand, within MPMX19_04056at 361.668 kb on - strand, within MPMX19_04056at 361.949 kb on + strandat 361.949 kb on + strandat 361.949 kb on + strandat 361.949 kb on + strandat 361.949 kb on + strandat 361.949 kb on + strandat 361.950 kb on - strandat 361.950 kb on - strandat 361.950 kb on - strandat 361.950 kb on - strandat 361.950 kb on - strandat 361.964 kb on + strandat 361.964 kb on + strandat 361.964 kb on + strandat 361.965 kb on - strandat 361.965 kb on - strandat 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.437 kb on + strand, within MPMX19_04057at 362.437 kb on + strand, within MPMX19_04057at 362.438 kb on - strand, within MPMX19_04057at 362.438 kb on - strand, within MPMX19_04057at 362.438 kb on - strand, within MPMX19_04057at 362.438 kb on - strand, within MPMX19_04057at 362.552 kb on + strand, within MPMX19_04057at 362.553 kb on - strand, within MPMX19_04057at 362.681 kb on - strand, within MPMX19_04057at 362.681 kb on - strand, within MPMX19_04057at 362.681 kb on - strand, within MPMX19_04057at 362.758 kb on + strand, within MPMX19_04057at 362.758 kb on + strand, within MPMX19_04057at 362.758 kb on + strand, within MPMX19_04057at 362.758 kb on + strand, within MPMX19_04057at 362.759 kb on - strand, within MPMX19_04057at 362.857 kb on + strand, within MPMX19_04057at 362.857 kb on + strand, within MPMX19_04057at 362.858 kb on - strand, within MPMX19_04057at 362.858 kb on - strand, within MPMX19_04057at 362.858 kb on - strand, within MPMX19_04057at 362.858 kb on - strand, within MPMX19_04057at 363.037 kb on + strandat 363.037 kb on + strandat 363.037 kb on + strandat 363.037 kb on + strandat 363.037 kb on + strandat 363.038 kb on - strandat 363.038 kb on - strandat 363.038 kb on - strandat 363.038 kb on - strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.101 kb on - strandat 363.101 kb on - strandat 363.101 kb on - strandat 363.101 kb on - strandat 363.101 kb on - strandat 363.101 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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358,860 + +1.3
358,860 + +0.1
358,860 + +0.7
359,037 + MPMX19_04055 0.19 +1.2
359,037 + MPMX19_04055 0.19 -1.0
359,037 + MPMX19_04055 0.19 +0.9
359,037 + MPMX19_04055 0.19 +0.4
359,038 - MPMX19_04055 0.19 -0.2
359,038 - MPMX19_04055 0.19 -0.7
359,038 - MPMX19_04055 0.19 +2.7
359,155 + MPMX19_04055 0.33 -0.3
359,155 + MPMX19_04055 0.33 +0.7
359,155 + MPMX19_04055 0.33 +0.9
359,155 + MPMX19_04055 0.33 -1.7
359,155 + MPMX19_04055 0.33 +0.1
359,155 + MPMX19_04055 0.33 -0.2
359,155 + MPMX19_04055 0.33 +0.3
359,155 + MPMX19_04055 0.33 -0.7
359,155 + MPMX19_04055 0.33 +1.0
359,155 + MPMX19_04055 0.33 -0.8
359,155 + MPMX19_04055 0.33 +0.2
359,155 + MPMX19_04055 0.33 +0.7
359,156 - MPMX19_04055 0.33 +1.3
359,156 - MPMX19_04055 0.33 -0.4
359,156 - MPMX19_04055 0.33 +0.7
359,156 - MPMX19_04055 0.33 +0.8
359,156 - MPMX19_04055 0.33 -0.0
359,156 - MPMX19_04055 0.33 +1.7
359,156 - MPMX19_04055 0.33 -2.1
359,156 - MPMX19_04055 0.33 -1.1
359,156 - MPMX19_04055 0.33 -0.1
359,156 - MPMX19_04055 0.33 +0.5
359,156 - MPMX19_04055 0.33 +1.2
359,156 - MPMX19_04055 0.33 -0.9
359,156 - MPMX19_04055 0.33 +0.7
359,156 - MPMX19_04055 0.33 -0.1
359,156 - MPMX19_04055 0.33 -1.8
359,156 - MPMX19_04055 0.33 -2.9
359,158 + MPMX19_04055 0.34 -1.3
359,158 + MPMX19_04055 0.34 -0.2
359,158 + MPMX19_04055 0.34 -0.1
359,158 + MPMX19_04055 0.34 -1.7
359,219 - MPMX19_04055 0.41 +1.6
359,219 - MPMX19_04055 0.41 +0.2
359,219 - MPMX19_04055 0.41 -0.8
359,414 + MPMX19_04055 0.65 -1.5
359,414 + MPMX19_04055 0.65 -0.5
359,473 + MPMX19_04055 0.72 +0.2
359,473 + MPMX19_04055 0.72 +1.1
359,473 + MPMX19_04055 0.72 +0.3
359,473 + MPMX19_04055 0.72 -0.7
359,473 + MPMX19_04055 0.72 -0.8
359,473 + MPMX19_04055 0.72 +0.4
359,473 + MPMX19_04055 0.72 +0.9
359,473 + MPMX19_04055 0.72 +0.2
359,473 + MPMX19_04055 0.72 -0.5
359,473 + MPMX19_04055 0.72 +0.5
359,474 - MPMX19_04055 0.72 -1.5
359,474 - MPMX19_04055 0.72 -0.2
359,474 - MPMX19_04055 0.72 -0.4
359,474 - MPMX19_04055 0.72 +1.0
359,474 - MPMX19_04055 0.72 +0.2
359,474 - MPMX19_04055 0.72 -1.0
359,474 - MPMX19_04055 0.72 +0.2
359,474 - MPMX19_04055 0.72 -1.7
359,474 - MPMX19_04055 0.72 +0.1
359,474 - MPMX19_04055 0.72 -0.7
359,566 + MPMX19_04055 0.83 -0.1
359,566 + MPMX19_04055 0.83 -0.7
359,566 + MPMX19_04055 0.83 -0.2
359,567 - MPMX19_04055 0.83 +0.4
359,567 - MPMX19_04055 0.83 -1.4
359,762 + +0.5
359,762 + -0.5
359,762 + -0.2
359,762 + +0.2
359,762 + +0.6
359,762 + -0.2
359,762 + -1.8
359,762 + -0.3
359,762 + +0.1
359,762 + -0.5
359,762 + +2.3
359,762 + -0.2
359,762 + -0.2
359,762 + +1.0
359,762 + -1.8
359,762 + -0.5
359,762 + -0.9
359,762 + -1.1
359,762 + -0.9
359,762 + +1.0
359,762 + +1.1
359,763 - -1.5
359,763 - +0.5
359,763 - -0.6
359,763 - +0.1
359,763 - -1.0
359,763 - +1.3
359,763 - +2.0
359,763 - -0.5
359,763 - -1.0
359,763 - -1.0
359,763 - +2.1
359,763 - -0.5
359,903 + -0.5
359,903 + +0.6
359,903 + +0.3
359,903 + -0.1
359,903 + +0.1
359,903 + +0.5
359,903 + -2.1
359,904 - +1.2
359,904 - -0.2
359,999 + +0.3
359,999 + +0.3
360,044 + -2.0
360,044 + +0.4
360,044 + +0.6
360,044 + +1.7
360,044 + -0.3
360,044 + -1.5
360,045 - -1.0
360,263 + MPMX19_04056 0.18 +0.1
360,263 + MPMX19_04056 0.18 -1.0
360,264 - MPMX19_04056 0.18 -0.2
360,264 - MPMX19_04056 0.18 -0.6
360,264 - MPMX19_04056 0.18 +0.0
360,264 - MPMX19_04056 0.18 +0.1
360,359 + MPMX19_04056 0.22 -0.3
360,359 + MPMX19_04056 0.22 -0.7
360,359 + MPMX19_04056 0.22 -1.1
360,359 + MPMX19_04056 0.22 +0.1
360,359 + MPMX19_04056 0.22 +1.0
360,359 + MPMX19_04056 0.22 +0.1
360,359 + MPMX19_04056 0.22 -0.7
360,359 + MPMX19_04056 0.22 +1.7
360,359 + MPMX19_04056 0.22 -0.1
360,359 + MPMX19_04056 0.22 +1.5
360,359 + MPMX19_04056 0.22 +0.5
360,360 - MPMX19_04056 0.23 +0.2
360,360 - MPMX19_04056 0.23 -0.2
360,360 - MPMX19_04056 0.23 -0.2
360,360 - MPMX19_04056 0.23 +0.3
360,360 - MPMX19_04056 0.23 +0.4
360,360 - MPMX19_04056 0.23 +0.1
360,360 - MPMX19_04056 0.23 +0.4
360,738 - MPMX19_04056 0.39 +1.9
360,743 + MPMX19_04056 0.39 +1.2
360,743 + MPMX19_04056 0.39 +0.5
360,743 + MPMX19_04056 0.39 -1.7
360,743 + MPMX19_04056 0.39 +0.2
360,744 - MPMX19_04056 0.39 +1.0
360,744 - MPMX19_04056 0.39 -1.1
360,744 - MPMX19_04056 0.39 -1.0
360,744 - MPMX19_04056 0.39 +0.2
360,744 - MPMX19_04056 0.39 +0.8
360,744 - MPMX19_04056 0.39 -0.7
360,848 + MPMX19_04056 0.44 -1.2
360,848 + MPMX19_04056 0.44 -1.8
360,849 - MPMX19_04056 0.44 -0.5
361,079 + MPMX19_04056 0.54 -0.3
361,079 + MPMX19_04056 0.54 +0.1
361,079 + MPMX19_04056 0.54 +0.3
361,080 - MPMX19_04056 0.54 -1.0
361,080 - MPMX19_04056 0.54 +2.5
361,080 - MPMX19_04056 0.54 +0.5
361,080 - MPMX19_04056 0.54 +1.1
361,349 + MPMX19_04056 0.66 +0.9
361,349 + MPMX19_04056 0.66 +0.5
361,349 + MPMX19_04056 0.66 +1.0
361,349 + MPMX19_04056 0.66 -0.7
361,350 - MPMX19_04056 0.66 +0.2
361,350 - MPMX19_04056 0.66 +0.7
361,350 - MPMX19_04056 0.66 +0.1
361,350 - MPMX19_04056 0.66 +0.2
361,520 + MPMX19_04056 0.73 -0.1
361,520 + MPMX19_04056 0.73 +1.9
361,521 - MPMX19_04056 0.73 -1.0
361,667 + MPMX19_04056 0.80 +0.3
361,668 - MPMX19_04056 0.80 +1.9
361,949 + -1.0
361,949 + -0.5
361,949 + -0.4
361,949 + -0.4
361,949 + +0.2
361,949 + -0.3
361,950 - -1.5
361,950 - +1.2
361,950 - -0.7
361,950 - +0.1
361,950 - +0.8
361,964 + +1.0
361,964 + -0.3
361,964 + +0.0
361,965 - +1.3
361,965 - +0.3
362,410 + MPMX19_04057 0.29 +0.5
362,410 + MPMX19_04057 0.29 -0.7
362,410 + MPMX19_04057 0.29 -1.3
362,410 + MPMX19_04057 0.29 +0.4
362,410 + MPMX19_04057 0.29 -1.2
362,410 + MPMX19_04057 0.29 +0.2
362,410 + MPMX19_04057 0.29 +0.3
362,410 + MPMX19_04057 0.29 -1.7
362,410 + MPMX19_04057 0.29 +0.7
362,410 + MPMX19_04057 0.29 +0.6
362,411 - MPMX19_04057 0.29 +0.3
362,411 - MPMX19_04057 0.29 +0.2
362,411 - MPMX19_04057 0.29 +0.6
362,411 - MPMX19_04057 0.29 +0.8
362,411 - MPMX19_04057 0.29 +0.9
362,411 - MPMX19_04057 0.29 -1.1
362,411 - MPMX19_04057 0.29 -0.5
362,437 + MPMX19_04057 0.31 +0.9
362,437 + MPMX19_04057 0.31 -0.7
362,438 - MPMX19_04057 0.31 -0.0
362,438 - MPMX19_04057 0.31 +0.2
362,438 - MPMX19_04057 0.31 +0.8
362,438 - MPMX19_04057 0.31 +0.5
362,552 + MPMX19_04057 0.43 -2.7
362,553 - MPMX19_04057 0.43 -0.6
362,681 - MPMX19_04057 0.56 -0.4
362,681 - MPMX19_04057 0.56 +1.3
362,681 - MPMX19_04057 0.56 -2.5
362,758 + MPMX19_04057 0.64 -1.5
362,758 + MPMX19_04057 0.64 -0.2
362,758 + MPMX19_04057 0.64 -0.2
362,758 + MPMX19_04057 0.64 +1.0
362,759 - MPMX19_04057 0.64 -0.6
362,857 + MPMX19_04057 0.74 -0.6
362,857 + MPMX19_04057 0.74 -0.5
362,858 - MPMX19_04057 0.74 -1.2
362,858 - MPMX19_04057 0.74 -1.2
362,858 - MPMX19_04057 0.74 +0.0
362,858 - MPMX19_04057 0.74 +0.1
363,037 + -0.2
363,037 + -1.2
363,037 + +0.8
363,037 + -0.1
363,037 + +1.1
363,038 - -0.2
363,038 - +1.0
363,038 - +0.1
363,038 - -2.4
363,100 + +0.3
363,100 + +2.6
363,100 + +0.2
363,100 + -0.5
363,100 + -0.1
363,100 + -0.2
363,100 + -0.8
363,100 + +0.1
363,100 + -0.1
363,101 - +2.3
363,101 - -0.0
363,101 - +0.4
363,101 - -1.5
363,101 - +1.9
363,101 - -0.1

Or see this region's nucleotide sequence